Triple Helices of Optimally Capped Duplex DNA (σ-DNA) with Homopyrimidine DNA and RNA at Neutral pH

An optimally capped duplex DNA (σ-DNA) was synthesized in which the cytosines in the homopyrimidine strand of σ-DNA 1 were replaced by 5-methylcytosine leading to σ-DNA 2 . Although only involving 13 base pairs, this modification resulted in very high melting temperatures above 90°. In addition, σ-DNA 2 was able to form triple helices with the corresponding homopyrimidine DNA or RNA even at neutral pH. This opens up the possibility to use σ-DNA in a triple-helix approach to modulate gene expressions on the level of the translation process.     

The Interaction of π-Orbitals in Barrelene

The photoelectron spectrum (PE. spectrum) of barrelene (bicyclo[2.2.2]octatriene, 4 ) is recorded and the first four bands are correlated with orbitals obtained with the MINDO/2-SCF procedure. The structural changes accompagnying the ionisation process 4 → 4 ⁺ are qualitatively derived from the features of the top-occupied a′₂ (π) MO of 4 , which shows complete σ-π separation. The vibrational pattern of the corresponding PE. band 1. as well as complete energy-minimisation of the geometries of 4 and 4 ⁺ support the conclusion that 4 is a rather strained molecule. The interaction of the three π? bonds in 4 are discussed in terms of ‘through-space’ and ‘through-bond’ interaction with lower lying σ-orbitals. It is found that the latter is far from being negligible.     

σ–π Continuum in Indole–Palladium(II) Complexes

The intrinsic features of (hetero‐arene)–metal interactions have been elusive mainly because the systematic structure analysis of non‐anchored hetero‐arene–metal complexes has been hampered by their labile nature. We report successful isolation and systematic structure analysis of a series of non‐anchored indole–palladium(II) complexes. It was revealed that there is a σ–π continuum for the indole–metal interaction, while it has been thought that the dominant coordination mode of indole to a metal center is the Wheland‐intermediate‐type σ‐mode in light of the seemingly strong electron‐donating ability of indole. Several factors which affect the σ‐ or π‐character of indole–metal interactions are discussed.     

Reaction of a Metallamacrocycle Leading to a Mercury(II)⋅⋅⋅Palladium(II)⋅⋅⋅Mercury(II) Interaction

All wrapped up : The reaction of a 22‐membered macrocycle derived from bis(o‐formylphenyl)mercury and 1,2‐phenylenediamine with palladium(II) results in cleavage of the macrocycle and concomitant formation of a trimetallic complex (see picture; phenyl rings truncated for clarity). The nature of the Hg^II???Pd^II???Hg^II interaction was investigated by theoretical studies.

     

The σ‐donating and π‐accepting properties of ortho‐Si(CH3)3 phosphinine macrocycles

A theoretical investigation of both the ortho‐Si(CH₃)₃ phosphinine and some silacalix[n]phosphinines was performed. The optimized geometries agree well with those reported from X‐ray analysis and other structural studies. The silacalix[n]phosphinine macrocyle is very flexible because of the C Si C bridges. This, in turn, makes possible the formation of strained configurations in solid packed structures. In the silacalix[3]phosphinine, a P P bonding interaction that is presumably responsible for its structural and electronic features seems to exist. The molecular orbital calculations corroborate that both the π‐accepting properties and the σ‐donating capacities of the phosphinine unit may be enhanced by ortho‐Si(CH₃)₃ substitution. These features satisfy the proposal of the synthesizers as regards the production of macrocyclic phosphorus compounds, with good π‐accepting properties and strong σ‐donating capacities, which are sufficiently flexible as to encapsulate metals with coordination spheres of different geometries. © 2003 Wiley Periodicals, Inc. Heteroatom Chem 14:160–169, 2003; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/hc.10118     

Tricarbonyl(η5‐formylcyclopentadienyl)manganese(I) and tricarbonyl(η5‐formylcyclopentadienyl)rhenium(I) containing short π(CO)...π(CO) and π(CO)...π interactions

The structures of tricarbonyl(formylcyclopentadienyl)manganese(I), [Mn(C₆H₅O)(CO)₃], (I), and tricarbonyl(formylcyclopentadienyl)rhenium(I), [Re(C₆H₅O)(CO)₃], (II), were determined at 100 K. Compounds (I) and (II) both possess a carbonyl group in a trans position relative to the substituted C atom of the cyclopentadienyl ring, while the other two carbonyl groups are in almost eclipsed positions relative to their attached C atoms. Analysis of the intermolecular contacts reveals that the molecules in both compounds form stacks due to short attractive π(CO)...π(CO) and π(CO)...π interactions, along the crystallographic c axis for (I) and along the [201] direction for (II). Symmetry‐related stacks are bound to each other by weak intermolecular C—H...O hydrogen bonds, leading to the formation of the three‐dimensional network.     

π–π Dimerization of a mono(pyridyl–imine) platinum(II) chelate

The cation of the title complex salt, chlorido{2,2‐dimethyl‐N‐[(E)‐1‐(pyridin‐2‐yl)ethylidene]propane‐1,3‐diamine}platinum(II) tetrafluoridoborate, [PtCl(C₁₂H₁₉N₃)]BF₄, exhibits a nominally square‐planar Pt^II ion coordinated to a chloride ion [Pt—Cl = 2.3046 (9) Å] and three unique N‐atom types, viz. pyridine, imine and amine, of the tridentate Schiff base ligand formed by the 1:1 condensation of 1‐(pyridin‐2‐yl)ethanone and 2,2‐dimethylpropane‐1,3‐diamine. The cations are π‐stacked in inversion‐related pairs (dimers), with a mean plane separation of 3.426 Å, an intradimer Pt...Pt separation of 5.0785 (6) Å and a lateral shift of 3.676 Å. The centroid (Cg) of the pyridine ring is positioned approximately over the Pt^II ion of the neighbouring cation (Pt...Cg = 3.503 Å).     

Enhanced Aerogen–π Interaction by a Cation–π Force

The interaction between a noble gas atom and an aromatic π‐electron system, which mainly originates from the London dispersion force, is very weak and has not attracted enough attention yet. Herein, we reported a type of notably enhanced aerogen–π interaction between cation–π systems and noble gas atoms. The binding strength of a divalent cation–π system with a xenon atom is comparable to a moderate hydrogen bond (up to ca. 7 kcal mol^?1), whereas krypton and argon atoms produce slightly weaker interactions. Energy‐decomposition analysis reveals that the induction interaction is responsible for the stabilization of divalent cation–π?Xe species besides the dispersion interaction. Our results might be helpful to increase the understanding of some unsolved mysteries of aerogens.     

(σ3,λ5)‐phosphoranes versus (σ3,λ3)‐thiaphosphiranes: Quantum chemical investigation of products of phosphaalkene sulfurization

By sulfurization of phosphaalkenes ( a ) either (σ³,λ⁵)‐phosphoranes ( b ) or (σ³,λ³)‐thiaphosphiranes ( c ) are formed. In this study, Density Functional Theory (DFT) and coupled cluster (CCSD(T)) calculations have been carried out for model and experimental structures of (σ³,λ⁵)‐phosphoranes and (σ³,λ³)‐thiaphosphiranes to elucidate the factors influencing relative stabilities of b and c . According to the results of quantum chemical calculations, sterically bulky substituents make the phosphorane form more favored. Conversely, electronic effects of the most substituents provide higher stability for thiaphosphirane isomers. The only exception has been found in the cases where the substituent at the phosphorus atom possesses π‐donor and σ‐acceptor properties (e.g., in the case of amino group) and the substituents at carbon atom exhibit σ‐donor/π‐acceptor effects (e.g., silyl groups). The stability of the cyclic form c decreases further, if the substituents at the carbon atom are amino groups. In this case, a quite unusual structure has been theoretically predicted, which is considerably different from those of the hitherto known phosphoranes. It indicates a pyramidal configuration at the phosphorus atom and can be conventionally presented as a donor–acceptor adduct of diaminocarbene with thioxophosphine. © 2012 Wiley Periodicals, Inc.     

The Cation–π Interaction in Small‐Molecule Catalysis

Catalysis by small molecules (≤1000 Da, 10^?9 m) that are capable of binding and activating substrates through attractive, noncovalent interactions has emerged as an important approach in organic and organometallic chemistry. While the canonical noncovalent interactions, including hydrogen bonding, ion pairing, and π stacking, have become mainstays of catalyst design, the cation–π interaction has been comparatively underutilized in this context since its discovery in the 1980s. However, like a hydrogen bond, the cation–π interaction exhibits a typical binding affinity of several kcal mol^?1 with substantial directionality. These properties render it attractive as a design element for the development of small‐molecule catalysts, and in recent years, the catalysis community has begun to take advantage of these features, drawing inspiration from pioneering research in molecular recognition and structural biology. This Review surveys the burgeoning application of the cation–π interaction in catalysis.     

η4‐HBCC‐σ,π‐Borataallyl Complexes of Ruthenium Comprising an Agostic Interaction

Thermolysis of [Cp*Ru(PPh₂(CH₂)PPh₂)BH₂(L₂)] 1 (Cp*=η⁵‐C₅Me₅; L=C₇H₄NS₂), with terminal alkynes led to the formation of η⁴‐σ,π‐borataallyl complexes [Cp*Ru(μ‐H)B{R‐C=CH₂}(L)₂] ( 2 a – c ) and η²‐vinylborane complexes [Cp*Ru(R‐C=CH₂)BH(L)₂] ( 3 a – c ) ( 2 a , 3 a : R=Ph; 2 b , 3 b : R=COOCH₃; 2 c , 3 c : R=p‐CH₃‐C₆H₄; L=C₇H₄NS₂) through hydroboration reaction. Ruthenium and the HBCC unit of the vinylborane moiety in 2 a – c are linked by a unique η⁴‐interaction. Conversions of 1 into 3 a – c proceed through the formation of intermediates 2 a – c . Furthermore, in an attempt to expand the library of these novel complexes, chemistry of σ‐borane complex [Cp*RuCO(μ‐H)BH₂L] 4 (L=C₇H₄NS₂) was investigated with both internal and terminal alkynes. Interestingly, under photolytic conditions, 4 reacts with methyl propiolate to generate the η⁴‐σ,π‐borataallyl complexes [Cp*Ru(μ‐H)BH{R‐C=CH₂}(L)] 5 and [Cp*Ru(μ‐H)BH{HC=CH‐R}(L)] 6 (R=COOCH₃; L=C₇H₄NS₂) by Markovnikov and anti‐Markovnikov hydroboration. In an extension, photolysis of 4 in the presence of dimethyl acetylenedicarboxylate yielded η⁴‐σ,π‐borataallyl complex [Cp*Ru(μ‐H)BH{R‐C=CH‐R}(L)] 7 (R=COOCH₃; L=C₇H₄NS₂). An agostic interaction was also found to be present in 2 a – c and 5 – 7 , which is rare among the borataallyl complexes. All the new compounds have been characterized in solution by IR, ¹H, ¹¹B, ¹³C NMR spectroscopy, mass spectrometry and the structural types were unequivocally established by crystallographic analysis of 2 b , 3 a – c and 5 – 7 . DFT calculations were performed to evaluate possible bonding and electronic structures of the new compounds.     

α,ω‐Nitroxide‐Capped Polystyrenes and Poly(butyl acrylate)s as Macroinitiators for the Free‐Radical Polymerization of Methyl Methacrylate

The use of a bisaminooxy compound as initiator for nitroxide‐mediated radical polymerization (NMRP) of styrene or n‐butyl acrylate allows the synthesis of α,ω‐nitroxide‐capped polymers. At high temperatures and with the addition of acetic anhydride, it was found that these polymers could be applied as macroinitiators in the free‐radical polymerization of methyl methacrylate. This enables the synthesis of block copolymers with only minor contents of homopolymer.

The structure of bis‐TIPNO, the bisaminooxy compound used as an initiator for the nitroxide‐mediated radical polymerization of styrene or n‐butyl acrylate.     

Intramolecular π–π stacking in diaquabis(2‐hydroxybenzoato‐κO)bis(1,10‐phenanthroline‐κ2N,N′)strontium(II)

In the title compound, [Sr(C₇H₅O₃)₂(C₁₂H₈N₂)₂(H₂O)₂], the Sr^II ion is located on a twofold rotation axis and assumes a distorted square‐antiprism SrN₄O₄ coordination geometry, formed by two phenanthroline (phen) ligands, two 2‐hydroxybenzoate anions and two water molecules. Within the mononuclear complex molecule, intramolecular π–π stacking is observed between nearly parallel coordinated phen ligands, while normal intermolecular π–π stacking occurs between parallel phen ligands of adjacent complex molecules. Classic O—H...O and weak C—H...O hydrogen bonding helps to stabilize the crystal structure.     

Manganese(IV) Corroles with σ‐Aryl Ligands

Different pathways for the preparation of organometallic manganese(IV) corroles with σ‐aryl ligands have been evaluated. The treatment of a manganese(III) corrole with Grignard reagents PhMgX (X = Cl, Br), followed by aerial oxidation yields oxidized halogenido complexes [(cor)Mn^IVX] instead of the anticipated organometallic compounds. Reaction of these halogenido species, especially the bromido compound, with excess Grignard reagents or with lithium aryls results in the formation of the desired σ‐aryl compounds via salt metatheses. Three examples of this class of rare complexes have been characterized by means of optical and ¹H NMR spectroscopy, and in two cases single crystal X‐ray diffraction studies have been carried out. In the crystal, the molecular structures of the σ‐phenyl‐ and the σ‐(p‐bromophenyl) derivatives were observed to be very similar, albeit both species pack in different pattern.