The adsorption of oxygen on a stepped platinum single crystal surface

The adsorption of oxygen on the Pt(S)-[12(111) × (111) surface has been studied by Auger electron spectroscopy, low energy electron diffraction and thermal desorption spectroscopy. Two types of adsorbed oxygen have been identified by thermal desorption spectroscopy and low energy electron diffraction: (a) atoms adsorbed on step sites; (b) atoms adsorbed on terrace sites. The kinetics of adsorption into these two states can be modeled by considering sequential filling of the two adsorbed atomic states from a mobile adsorbed molecular precursor state. Adsorption on the step sites occurs more rapidly than adsorption onto the terraces. The sticking coefficient for oxygen adsorption is initially 0.4 on the step sites and drops when the step sites are saturated. The heat of desorption from the step site (45 ± 4 kcal/mole) is about 15% larger than the heat of desorption from the terraces.     

Adsorbate-adsorbate interactions and the ordering of organic monolayers on metal surfaces

To study the ordering of molecules adsorbed on single-crystal substrates, a molecular cross-section (MCS) is defined, which measures the surface area occupied by each molecule. With this MCS, a two-dimensional packing coefficient C_2D is then defined for ordered arrays of adsorbed molecules. Values and trends for MCS and C_2D are discussed for known surface structures, especially for benzene adsorbed on metal surfaces. The packing is found to be generally less dense at surfaces than one would expect from comparison with packing in three-dimensional organic crystals. The Van der Waals packing energy and the repulsive dipole-dipole energy are also computed to study this issue. The lack of close-packing is attributed to the need to respect structural coincidence with the substrate and/or co-adsorption of small molecules like CO. These concepts are then applied to the prediction of the long-range order that a monolayer of adsorbed molecules may adopt: thereby possible adsorption structures can be defined, restricting the number of possibilities in a further structural determination.     

Self-assembly and growth of manganese phthalocyanine on an Au（111） surface

Self-assembly and growth of manganese phthalocyanine (MnPc) molecules on an Au(111) surface is investigated by means of low-temperature scanning tunneling microscopy. At the initial stage, MnPc molecules preferentially occupy the step edges and elbow sites on the Au(111) surface, then they are separately adsorbed on the face-centered cubic and hexagonal closely packed regions due to a long-range repulsive molecule—molecule interaction. After the formation of a closely packed monolayer, molecular islands with second and third layers are observed.     

Silver nanoparticle coverage dependence of surface-enhanced Raman scattering

We report surface-enhanced Raman scattering (SERS) from 4-mercaptopyridine adsorbed on nanotextured silver surfaces as the coverage of silver is varied. The degree of surface enhancement is strongly dependent on silver coverage and correlated to the extinction of the surface at the Raman excitation wavelength, that extinction being determined by multiparticle surface plasmon resonances. The coverage dependence of the Raman intensity is consistent with signals being dominated by molecules at junctions inside nanoparticle aggregates where electromagnetic energy is localized into “hot spots” by interactions of the incident and scattered fields with the surface plasmons. The Raman intensity drops precipitously near the conductivity percolation threshold because these hot spots are destroyed when conducting paths allow plasmons to propagate. Our approach to substrate preparation provides clean surfaces with average enhancements ≥10⁷, an order of magnitude larger than typical for SERS. PACS 78.67.-n; 78.68.+m; 33.20.Fb     

Adsorption and nucleation on smooth surfaces

The nucleation and growth of condensate nuclei on smooth surfaces, e.g., an immiscible liquid or a smooth solid, can occur both by the direct addition of molecules from the vapor and from those adsorbed on the substrate. We show how to generalize nucleation theory to allow for the simultaneous occurrence of both mechanisms. The vapor-condensate-substrate interfacial forces, the contact angle, the critical supersaturation, and the coefficient in the adsorption isotherm are different ways of expressing the affinity between vapor molecules and the substrate surface. The critical supersaturations for nucleation on the surface of an immiscible liquid and nucleation on the surface of a perfectly smooth solid are predicted in terms of these parameters and the relationships among them. For most values of these parameters we find that adsorbed molecules are usually far more important to the nucleation process than those in the vapor phase.     

Vibronic states in single molecule electron transport

A scanning tunneling microscope was used to study the electron transport through individual copper phthalocyanine molecules adsorbed on an ultrathin Al(2)O(3) film grown on a NiAl(110) surface. The differential conductance spectra display series of equally spaced features, which are attributed to vibronic states of individual molecules. The coupling of the electron current to the vibronic modes was observed to depend on the structures of the adsorbed molecules. Vibronic features were not observed for molecules adsorbed on the bare NiAl(110) surface due to spectral broadening.     

Estimation of friction of a single chemisorbed molecule on a surface using incident atoms

Friction of a single molecule chemisorbed on a surface is a very fundamental property related to the dynamics of the diffusion of the molecule. We used a newly developed method, in which energy-controlled rare gas atoms collide with CO molecules on a stepped surface to displace CO molecules from initial terrace sites to final step sites. The friction coefficient of CO molecules on the surface was determined directly by comparing the experimentally measured increase in the number of CO molecules at step sites with classical molecular dynamics simulation results.     

Size-dependent denaturing kinetics of bovine serum albumin adsorbed onto gold nanospheres

We have used localized surface plasmon resonance (LSPR) to monitor the kinetics of thermal denaturing of bovine serum albumin (BSA) adsorbed onto gold nanospheres of size 5 nm-100 nm. The effect of the protein on the LSPR was monitored by visible extinction spectroscopy. The wavelength of the peak extinction (resonance) is affected by the conformation of the adsorbed protein layer, and as such can be used as a very sensitive probe of thermal denaturing that is specific to the adsorbed (as opposed to free) protein. The time dependence of the denaturing is measured in the temperature range 60 °C–70 °C, and the lifetimes are used to calculate an activation barrier for thermal denaturing. The results show that thermally activated denaturing of proteins adsorbed onto nanoparticles has a nanoparticle-size-dependent activation barrier, and this barrier increases for decreasing particle size. This may have important implications for other protein-nanoparticle interactions.     

Dynamics of water molecules adsorbed by silica and resin SGK-7

This paper has presented neutron spectroscopy data on the dynamics of light water molecules adsorbed in the cation exchanger (ion-exchange resin) SGK-7 and on the surface of aerosils (highly dispersed pyrogenic silica) with different levels of hydration. The measurements have been performed on a DIN-2PI spectrometer (Frank Laboratory of Neutron Physics of the Joint Institute for Nuclear Research, Dubna, Russia). The characteristics of the diffusive and vibrational motions of adsorbed water molecules have been determined from the experimental neutron scattering spectra. The data obtained in the quasi-elastic neutron scattering region have been analyzed using a model accounting for the effects of restricted translational and rotational diffusion. The results have demonstrated a significant decrease in the diffusion mobility of adsorbed water molecules as compared to conventional (bulk) water. In particular, the self-diffusion coefficient decreases several times, and the diffusion rate is the lower, the smaller is the thickness of the hydration layer. The dependences of the intensity and half-width of the quasi-elastic scattering peak on the magnitude of the neutron momentum transfer q in the scattering process exhibit a nonmonotonic character. This indicates manifestation of the effects of restricted translational diffusion, rotational diffusion, and jump diffusion. The partial distributions of vibrational frequencies of hydrogen atoms of water molecules adsorbed by the cation exchanger and aerosils have been obtained from the inelastic neutron scattering data.     

The special features of adsorption and the kinetics of decomposition of monosilane molecules on the epitaxial surface of silicon

Analytic equations relating the rate of the incorporation of silicon atoms into a growing crystal to the characteristic frequency of the pyrolysis of silane molecules on the surface of silicon were obtained over the temperature range corresponding to the epitaxial growth of silicon films. As distinct from the earlier works, it was assumed that adsorbed silicon atoms and monosilane molecules formed double bonds with the surface. The data of technological experiments for the most extensively used pyrolysis models obtained thus far were used to determine the region of the characteristic frequencies of the decomposition of hydride molecule radicals adsorbed on the surface of a silicon plate over the temperature range 450–700°C. The temperature dependence of the frequency of monosilane molecule decomposition was shown to be to a great extent determined by the form of the temperature dependence of the $ \tilde v_{SiH_2 }^0 $ \tilde v_{SiH_2 }^0 preexponential factor. It was also found that the characteristic frequency of the decomposition of silane molecules was sensitive to the stage of pyrolysis at which hydrogen atoms released from silane molecules were captured by the surface. Decomposition occurred at the highest rate if hydrogen molecules were adsorbed at the stage of the adsorption of monosilane. The lowest rate of decomposition was observed if hydrogen molecules were adsorbed at the stage of the decomposition of radicals already captured by the surface. The temperature dependence of the coefficient of adsorption of monosilane molecules was characterized by a negative activation energy of the process for almost all the most important system models over the temperature range of growth. At elevated growth temperatures, the adsorption of monosilane molecules by the surface of silicon proceeded via an intermediate state characterized by the difference of desorption and chemisorption energies on the order of 0.28 eV.     

Coupled harmonic oscillator models of carbon monoxide adsorbed on stepped,platinum surfaces

Harmonic oscillator models are used to explain recent experimental data on infrared absorption by CO molecules adsorbed on two stepped platinum surfaces. These data reveal only a lower frequency band at low coverage and only a higher frequency band at high coverage. Both bands exist over a range of intermediate coverages. The data are explained by a coupled-dipole model which includes the effects of electronic polarizability, the tilted orientation of CO molecules at step sites, and the electric field enhancement at step sites. The lower-frequency band is associated with CO molecules adsorbed on step sites and the higher-frequency band is associated with two-dimensional islands consisting of both step and terrace CO. The model explains the observed variation of frequency and intensity with coverage for CO adsorption on Pt(533) and Pt(432) surfaces. The model calculations indicate that the wavenumber for a single, linearly bonded CO molecule is about 9 cm⁻¹ higher on a terrace site than on a step site.     

Adsorption dynamics of double-stranded DNA on a graphene oxide surface with both large unoxidized and oxidized regions

The adsorption dynamics of double-stranded DNA (dsDNA) molecules on a graphene oxide (GO) surface are important for applications of DNA/GO functional structures in biosensors, biomedicine and materials science. In this work, molecular dynamics simulations were used to examine the adsorption of different length dsDNA molecules (from 4 bp to 24 bp) on the GO surface. The dsDNA molecules could be adsorbed on the GO surface through the terminal bases and stand on the GO surface. For short dsDNA (4 bp) molecules, the double-helix structure was partially or totally broken and the adsorption dynamics was affected by the structural fluctuation of short dsDNA and the distribution of the oxidized groups on the GO surface. For long dsDNA molecules (from 8 bp to 24 bp) adsorption is stable. By nonlinear fitting of the contact angle between the axis of the dsDNA molecule and the GO surface, we found that a dsDNA molecule adsorbed on a GO surface has the chance of orienting parallel to the GO surface if the length of the dsDNA molecule is longer than 54 bp. We attributed this behavior to the flexibility of dsDNA molecules. With increasing length, the flexibility of dsDNA molecules also increases, and this increasing flexibility gives an adsorbed dsDNA molecule more chance of reaching the GO surface with the free terminal. This work provides a whole picture of adsorption of dsDNA molecules on the GO surface and should be of benefit for the design of DNA/GO based biosensors.     

胞嘧啶核苷在纳米银膜上的NIR-SERS光谱检测

采用一种高活性的纳米银膜作为表面增强拉曼散射(SERS)基底,以近红外激光(785 nm)作为激发光源,对胞嘧啶核苷(胞苷)水溶液(10-2～10-8 mol·L-1)进行了近红外表面增强拉曼散射(NIR-SERS)光谱检测。实验结果表明,当胞苷水溶液浓度等于或低于10-7 mol · L-1时,可在300～2 000 cm-1范围内获得信噪比较好的NIR-SERS光谱。将胞苷水溶液(10-2～10-5 mol · L-1)分别滴在10片不同的纳米银薄膜上进行检测,结果表明该纳米银膜体现出了较好的光谱重现性。通过对纳米银膜表面形貌进行表征发现聚乙烯醇(PVA)包覆的纳米银颗粒在铝片表面形成“草状”结构。并通过对吸附了胞苷分子的纳米银膜进行紫外-可见光反射光谱检测,发现在800 nm处出现等离子共振峰。因此采用785 nm的近红外激光作为激发光时,该体系能够体现出强烈的表面等离子共振(surface plasmon resonance, SPR)特性。同时采用DFT-B3LYP/6-311G对胞苷分子进行了拉曼光谱计算,计算所采用入射光波长为785 nm,通过计算结果与实验测得的胞苷固体的拉曼光谱对比发现在300～2 000 cm-1范围内两者匹配得较好,进而对其振动进行了归属。最后通过比较胞苷的拉曼光谱和NIR-SERS光谱对胞苷分子在纳米银膜上的可能吸附方式进行了分析。分析结果表明胞苷分子主要为其核糖部分吸附纳米银颗粒上,同时该分子的17NH₂基团可能靠近局域电磁场增强区域。     

表面增强喇曼散射(SERS)光谱中影响增强效应因素的实验研究(Ⅲ)

本文研究了苯甲酸水溶液的pH值,电极外加电位对银电极表面吸附苯甲酸SERS光谱表面增强效应的影响。实验结果表明,苯甲酸以—COO~-根负离子吸附于银电极表面。通过改变溶液的pH值,使苯甲酸吸附于粗糙银电极表面,溶液pH值影响电极表面吸附苯甲酸的面密度,电极外加电位影响—COO~-根离子与银电极间的电荷迁移,电极外加电位也影响苯甲酸在粗糙银电极表面的吸附。     

Frequency shifts in the spectra of molecules adsorbed on metals,with emphasis on the infrared spectrum of adsorbed CO

Two processes are considered which cause the frequency of the band maximum in the infrared absorption spectrum of molecules adsorbed on metals to shift with increasing coverage. The first arises from the coverage-dependent modification of the local field acting on an adsorbed molecule while the second originates from vibrational coupling arising from a through-metal interaction between molecules adsorbed on different metal atoms. Infrared absorption strengths are discussed and the method used heretofore to obtain the extinction coefficients of adsorbed molecules is questioned. In particular, a factor of 2 which results from the constructive superposition of the incident and reflected electric fields is shown to be often ignored. We show that dipolar (through-space) coupling is too weak to account for the magnitudes of the shifts recently observed for CO on single-crystal Pt and Pd as coverage progressed from low to high values. Vibrational coupling is also shown to account for the disparity in the intensities of the two bands observed when ¹²CO and ¹³CO are coadsorbed on supported metals. Similar experiments on single-crystal surfaces are suggested to help determine to what extent the observed spectral frequency shifts are derived from adsorbate—adsorbate coupling as opposed to other mechanisms.     

A periodic DFT study on adsorption of small molecules(CH_4,CO,H_2O,H_2S,NH_3)on the WO_3(001) surface-supported Au

Gas molecules(such as CH4,CO,H2O,H2S,NH_3)adsorption on the pure and Au-doped WO3(001)surface have been studied by Density functional theory calculations with generalized gradient approximation.Based on the the calculation of adsorption energy,we found the most stable adsorption site for gas molecules by comparing the adsorption energies of different gas molecules on the WO3(001)surface.We have also compared the adsorption energy of five different gas molecules on the WO3(001)surface,our calculation results show that when the five kinds of gases are adsorbed on the pure WO3(001)surface,the order of the surface adsorption energy is CO>H2S>CH4>H2O>NH3.And the results show that NH3 is the most easily adsorbed gas among the other four gases adsorbed on the surface of pure WO3(001)surface.We also calculated the five different gases on the Au-doped WO3(001)surface.The order of adsorption energy was found to be different from the previous calculation:CO>CH4>H2S>H2O>NH3.These results provide a new route for the potential applications of Au-doped WO3 in gas molecules adsorption.     

Local electric field and configuration of CO molecules adsorbed on a nanostructured surface with nanocones

Based on the nanostructured surface model that the (platinum, Pt) nanocones grow out symmetrically from a plane substrate, the local electric field near the conical nanoparticle surface is computed and discussed. On the basis of these results, the adsorbed CO molecules are modelled as dipoles, and three kinds of interactions, i.e. interactions between dipoles and local electric field, between dipoles and dipoles, as well as between dipoles and nanostructured substrate, are taken into account. The spatial configuration of CO molecules adsorbed on the nanocone surface is then given by Monte-Carlo simulation. Our results show that the CO molecules adsorbed on the nanocone surface cause local agglomeration under the action of an external electric field, and this agglomeration becomes more compact with decreasing conical angle, which results in a stronger interaction among molecules. These results serve as a basis for explaining abnormal phenomena such as the abnormal infrared effect (AIRE), which was found when CO molecules were adsorbed on the nanostructured transition-metal surface.     

Electrostatic Nature of Size Dependences of Adsorption Properties of Ytterbium Nanofilms Grown on the Surface of Silicon: the CO–Yb–Si(111) System

The adsorption of CO molecules onto ytterbium nanofilms with their thickness varying from 1 to 16 monolayers is studied. The dependences of the number of adsorbed CO molecules (adsorption isotherms) and the work function of ytterbium films on the dose of carbon monoxide are examined. It is demonstrated that both the number of adsorbed molecules and the work function depend (under equal conditions) on the nanofilm thickness; in other words, a size effect is revealed. It is found that this size effect is induced by the electrostatic interaction between the conduction electrons of ytterbium and the electrons localized on the nanofilm surface, which establish bonding between the surface and CO molecules. This interaction depends on the film thickness and limits the number of CO molecules that may be adsorbed onto the surface of a film with a given thickness.

     

In-situ optical spectroscopy and electronic properties of pyrrole sub-monolayers on Ga-rich GaAs(001)

We report on the characterization of sub-monolayers of pyrrole adsorbed on Ga-rich GaAs(001) surfaces. The interfaces were characterized by scanning tunneling microscopy (STM), scanning tunneling spectroscopy (STS) and reflectance anisotropy spectroscopy (RAS) in a spectral range between 1.5 and 8 eV. The adsorption of pyrrole on Ga-rich GaAs(001) modifies the RAS spectrum of the clean GaAs surface significantly at the surface transitions at 2.2 and 3.5 eV indicating a chemisorption of the molecules. By the help of transients at these surface transitions during the adsorption process, we were able to prepare different molecular coverages from a sub-monolayer up to a complete molecular layer. The different coverages of pyrrole were imaged by STM and electronically characterized by STS. The measurements reveal that the adsorbed molecules electronically insulate the surface and indicate the formation of new interface states around −3.5 and +4.2 eV. The RAS measurements in the UV region show new anisotropies in the spectral range of the optical transitions of the adsorbed pyrrole molecules. Our measurements demonstrate the potential of optical and electronic spectroscopy methods for the characterization of atomically thin molecular layers on semiconductor surfaces allowing a direct access to the properties of single adsorbed molecules.     

Chemisorption and ordering of naphthalene and azulene on Pt(s)[7(111) × (100)]: The effect of periodic defects on long range order

Naphthalene and azulene are molecularly adsorbed on the stepped platinum surface Pt(s)[7(111)×(100)] at room temperature. The (111) terraces of this surface are wide enough to accommodate the unit cell of ordered naphthalene on Pt(111). The periodic defects of this surface disrupt the long range ordering seen for both naphthalene and azulene on Pt(111). There appears to be no correlation between ordered islands on neighboring terraces. In the case of naphthalene, a LEED intensity anomaly allows us to place restrictions on the relative orientations of neighboring naphthalenes and the orientation of the naphthalene islands on each terrace. The naphthalene molecules adjacent to the steps have the long axis of the molecule close to perpendicular to the step.