Designed Synthesis of a 1D Polymer in Twist‐Stacked Topology via Single‐Crystal‐to‐Single‐Crystal Polymerization

To synthesize a fully organic 1D polymer in a novel twist‐stacked topology, we designed a peptide monomer HC≡CCH₂‐NH‐Ile‐Leu‐N₃, which crystallizes with its molecules H‐bonded along a six‐fold screw axis. These H‐bonded columns pack parallelly such that molecules arrange head‐to‐tail, forming linear non‐covalent chains in planes perpendicular to the screw axis. The chains arrange parallelly to form molecular layers which twist‐stack along the screw axis. Crystals of this monomer, on heating, undergo single‐crystal‐to‐single‐crystal (SCSC) topochemical azide–alkyne cycloaddition (TAAC) polymerization to yield an exclusively 1,4‐triazole‐linked polymer in a twist‐stacked layered topology. This topologically defined polymer shows better mechanical strength and thermal stability than its unordered form, as evidenced by nanoindentation studies and thermogravimetric analysis, respectively. This work illustrates the scope of topochemical polymerizations for synthesizing polymers in pre‐decided topologies.     

Deposition and aggregation of aspirin molecules on a phospholipid bilayer pattern

Aspirin and 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine (DMPE) are deposited from their alcoholic mixed solution onto highly oriented pyrolytic graphite (HOPG) by spin coating. The film structure and morphology are characterized by atomic force microscopy (AFM). The barely soluble DMPE forms a highly oriented stripe phase as a result of its one-dimensional epitaxy with the HOPG lattice. The bilayer stripe pattern exposes the cross section of the lipid bilayer lamellae and enables the direct visualization of the molecular interactions of drug or biological molecules with either the hydrophobic or the hydrophilic part of the phospholipid bilayer. The bilayer pattern affects the aspirin molecular deposition and aggregation. AFM shows that the aspirin molecules prefer to deposit and aggregate along the aliphatic interior part of the bilayer pattern, giving rise to parallel dimer rods in registry with the underlying pattern. The nonpolar interactions between aspirin and the phospholipid bilayer are consistent with the lipophilic nature of aspirin. The bilayer pattern not only stabilizes the rodlike aggregate structure of aspirin at low aspirin concentration but also inhibits crystallization of aspirin at high aspirin concentration. Molecular models show that the width of the DMPE aliphatic chain interior can accommodate no more than two aspirin dimers. The bilayer confinement may prevent aspirin from reaching its critical nucleus size. This study illustrates a general method to induce a metastable or amorphous form of an active pharmaceutical ingredient (API) by chemical confinement under high undercooling conditions. Metastable and amorphous solids often display better solubility and bioavailability than the stable crystalline form of the API.     

Self-localization of polyacrylic acid molecules on polar ZnO(0001)-Zn surfaces

The adsorption of single polyacrylic acid (PAAc) molecules was investigated on stepped hydroxide-stabilized polar ZnO(0001)-Zn surfaces using atomic force microscope (AFM) topography and force distance spectroscopy. Stepped surfaces of ZnO(0001)-Zn were prepared by a wet chemical etching procedure and PAAc molecules were adsorbed from aqueous NaClO(4) solutions. AFM single molecule topography studies could be utilized to show that polyacrylic acid molecules specifically adsorb on the non-polar (10-10) step edge faces at low ionic strengths. The radius of gyration of the dissolved PAAc in aqueous solution was measured by means of static light scattering experiments yielding a radius of gyration of R(g)=136 nm at pH 7.4 in 50 mM NaClO(4)/NaOH solution, which is in good agreement with the size of the adsorbed PAAc molecules as measured using AFM. The obtained results could be rationalized in terms of binding-site configurations at step edges and the effect of the chemical environment on both local electric double layer charge and molecular conformation of the PAAc molecules. The point of zero charge of the ZnO(10-10) surface was measured with chemical force microscopy to be pH(PZC)=10.2 ± 0.2. The specific adsorption of polyacrylic acid at non-polar ZnO step-edges can be explained by coordinative bonds formed between the carboxylic acid group and the Zn-surface atoms. On the hydroxide stabilized polar surface only weak hydrogen bonds can be formed in addition to van-der-Waals forces. Thus a "diffusion and trapping" mechanism keeps the adsorbed PAAc molecules mobile on the ZnO(0001)-Zn surface terraces due to small interaction forces until they are trapped at the (10-10) step faces by stronger coordinative bonds from the carboxylic groups to zinc atoms located in the first atomic layer of the crystal structure.     

Electrochemistry of platinum single crystal surfaces: Part II. Structural effect on formic acid oxidation and poison formation on Pt (111), (100) and (110)

The geometrical arrangement of sites favourable for formic acid oxidation and the poison formation reaction is determined using low index platinum single crystal planes. For this determination, the least number of sites required for the reactions to occur, which was obtained in the study of electrocatalysis by adatoms, was used, that is three adjacent sites are required for formic acid oxidation and four adjacent sites are required for poison formation.The triplet of sites on a unit lattice of Pt (111) and that on a unit lattice of Pt (100) plane are equally very favourable for the main oxidation reaction, but that on a unit lattice of Pt (110) is not so favourable as those on the former two planes. The oxidation rate is more than one order of magnitude lower on the latter than on the former triplets.The poison formation reaction proceeds at a very high rate on the (100) and the (110) planes. The geometrical arrangement of four sites on a square unit lattice of the (100) plane and on a rectangular unit lattice of the (110) plane are favourable for the poison formation reaction, but that on a hexagonal unit lattice of the (111) plane is not so favourable as the former two.     

Organic dye molecules as reducing agent for the synthesis of electroactive gold nanoplates

Highly crystalline, hexagonal and triangular nanoplates of gold are synthesized in high yield by a new wet chemical method using multifunctional molecules, Bismarck brown R (BBR) and Bismarck brown Y (BBY). This method involves a simple approach by keeping a mixture of aqueous HAuCl4 solution and BBR/BBY solution in presence of poly(vinyl pyrrolidone) for 24 h. These nanostructures show unprecedented electrochemical properties exhibiting surface confinement effect. The UV-visible (UV-vis) spectrum shows certain distinct features with absorptions at 300, 400, and 650 nm extending up to the near infrared region. Selected area electron diffraction patterns of these nanoparticles show highly oriented (111) crystal facets. X-ray diffraction analysis also confirms the predominant orientation in the (111) crystal planes with lattice constant approximately 4.07 angstroms of face-centered-cubic (fcc) gold. X-ray photoelectron (XP) and Fourier transform infrared (FTIR) spectroscopic analysis shows the presence of a fraction of reducing molecules as surface passivating agent either in the unreacted molecular state or as a mixture of reacted and unreacted product, which probably undergoes charge transfer with gold nanocrystals giving absorption at approximately 300 nm.     

Enantioselective binding of an 11-cis-locked cyclopropyl retinal. The conformation of retinal in bovine rhodopsin

[formula: see text] The conformation of the retinal chromophore in rhodopsin is central for understanding the visual transduction process. The absolute twist around the 12-s bond of the chromophore in rhodopsin has been determined by studies with 11-cis-locked 11,12-cyclopropylretinal analogues (11S,12R)-2 and (11R,12S)-3, enantioselectively synthesized with the aid of an enzyme. The finding that enantiomer 2 binds to opsin while the other 3 does not defines the absolute sense of twist around the 12-s bond.     

Highly efficient dye-sensitized solar cells with a titania thin-film electrode composed of a network structure of single-crystal-like TiO2 nanowires made by the "oriented attachment" mechanism

In this study, single-crystal-like anatase TiO(2) nanowires were formed in a network structure by surfactant-assisted self-assembling processes at low temperature. The crystal lattice planes of the nanowires and networks of such wires composed of many nanoparticles were almost perfectly aligned with each other due to the "oriented attachment" mechanism, resulting in the high rate of electron transfer through the TiO(2) nanonetwork with single-crystal-like anatase nanowires. The direction of crystal growth of oriented attachment was controlled by changing the mole ratio of acetylacetone to Ti, that is, regulating both the adsorption of surfactant molecules via control of the reaction rate and the surface energy. A single-crystalline anatase exposing mainly the [101] plane has been prepared, which adsorbed ruthenium dye over 4 times higher as compared to P-25. A high light-to-electricity conversion yield of 9.3% was achieved by applying the titania nanomaterials with network structure as the titania thin film of dye-sensitized solar cells.     

Origins for epitaxial order of sexiphenyl crystals on muscovite(001)

The epitaxial order of sexiphenyl crystals on muscovite(001) is investigated by x‐ray diffraction, lattice misfit calculations and atomic force microscopy. Depending on the substrate temperature during the thin film growth process, different epitaxial orientations are formed. Sexiphenyl thin films prepared at 370 K preferentially form crystals with the crystallographic (11‐1) planes parallel to the substrate surface while at 434 K a strong fraction of crystals with (11‐2) orientations is grown. The epitaxial orders of sexiphenyl crystals are compared with lattice misfit calculations. The in‐plane order of the {11‐1} crystals can be explained by a point‐on‐line coincidence I, which reveals that the interface is formed by undisturbed crystal surfaces. The epitaxial order of the {11‐2} oriented crystals is characterised by the experimental observation that low indexed crystal directions in the sexiphenyl(11‐2) plane and the muscovite(001) surface coincide with each other, forming a near‐coincidence case. Corrugations of the substrate surface are responsible for this second type of epitaxial order. Characteristic features in the thin film morphology could be correlated to the two observed epitaxial orientations of the sexiphenyl crystals. Copyright © 2009 John Wiley & Sons, Ltd.     

Orientation of the boundary faces in nylon-11 lamellar crystals

A semicrystalline polymer having a large repeat unit, as does nylon-11, is particularly suitable for seeking correlation between the orientation of the lattice and the basal planes of the lamellar crystals. In filter mats of nylon-11 single crystals, the basal planes of the lamellae are parallel to (00l) crystallographic planes; the chain axis is tilted with respect to the mat plane. By planar extrusion, bulk double oriented specimens with a nearly single texture can be prepared: the basal planes of the lamellae are parallel to (00l) planes and the chain axis is along the extrusion direction. Doubly oriented samples of nylon-11 having a double texture have been obtained by unidirectional rolling. In these samples, the chain axes are along the rolling direction; the basal planes of the lamellar crystals are not parallel to (00l) planes. It has been proposed that lamellae consist of blocks of six hydrogen-bonded planes shifted by one monomer unit. The parallelism between basal planes of lamellae and (00l) planes is obtained again in rolled samples annealled in contact with formic acid. Those annealed samples are similar to filter mats with respect to the orientation of the lamellar basal planes but they remain doubly oriented at the level of the unit cell; they have a long spacing larger than filter mats of single crystals.     

Photoisomerization of cis,cis- to trans,trans-1,4-diaryl-1,3-butadienes in the solid state: the bicycle-pedal mechanism

The photoisomerizations of crystalline or powdered cis,cis-1,4-diphenyl- and 1,4-di(o-tolyl)-1,3-butadienes (cc-DPB and cc-DTB) to the trans,trans isomers were studied at room temperature. The progress of the reactions was monitored by fluorescence spectroscopy, powder X-ray diffraction, (1)H NMR, and high-performance liquid chromatography. Conversions to the trans,trans isomers were as high as 90% for cc-DPB and 20% for cc-DTB. Formation of the cis,trans isomers, the sole products obtained in solution and in very viscous glassy media at 77 K, is completely suppressed in the solid state. The observed two-bond photoisomerizations are explained by the bicycle-pedal (BP) photoisomerization mechanism. X-ray structure determinations show that o-methyl substitution causes a widening of the phenyl/diene dihedral angles from 40 degrees to 56 degrees and decreases the number of conformers in the crystal from two in cc-DPB to one in cc-DTB. The two conformers of cc-DPB molecules exist in crystals in edge-to-face alternating arrays, one of which has the two phenyls in parallel planes and the other in roughly perpendicular planes. The edge-to-face relationship is maintained in cc-DTB, but only the conformer with the o-tolyl groups in parallel planes is present. The time evolutions of fluorescence spectra measured in the course of the photoreaction show remarkable similarities, despite the different molecular conformations and crystal packing arrangements. Principal component analyses of the spectral matrices indicate the formation of discrete components, suggesting that the two-bond photoisomerizations proceed in stages involving molecules in different microcrystal environments. The structureless appearances of the initial fluorescence spectra show that the reactions are in part diabatic. The BP mechanism can account for the observations if the bicycle-pedal motion began in the excited state, S(1), and were completed in the ground state, S(0). Analysis of void spaces in the crystal lattice reveals much less compact packing of cc-DPB than of cc-DTB molecules, possibly explaining the much higher conversions to photoproduct from cc-DPB.     

Absolute asymmetric photocyclization in chiral diarylethene co-crystals with octafluoronaphthalene

A photochromic diarylethene containing naphthyl groups formed a chiral crystal when co-crystallized with octafluoronaphthalene, although both molecules are achiral, and underwent highly enantioselective photocyclization owing to the conformational confinement in the crystal.     

Understanding the Rhodopsin Worldview Through Atomic Force Microscopy (AFM): Structure,Stability, and Activity Studies

Rhodopsin is a G protein-coupled receptor (GPCR) present in the rod outer segment (ROS) of photoreceptor cells that initiates the phototransduction cascade required for scotopic vision. Due to the remarkable advancements in technological tools, the chemistry of rhodopsin has begun to unravel especially over the past few decades, but mostly at the ensemble scale. Atomic force microscopy (AFM) is a tool capable of providing critical information from a single-molecule point of view. In this regard, to bolster our understanding of rhodopsin at the nanoscale level, AFM-based imaging, force spectroscopy, and nano-indentation techniques were employed on ROS disc membranes containing rhodopsin, isolated from vertebrate species both in normal and diseased states. These AFM studies on samples from native retinal tissue have provided fundamental insights into the structure and function of rhodopsin under normal and dysfunctional states. We review here the findings from these AFM studies that provide important insights on the supramolecular organization of rhodopsin within the membrane and factors that contribute to this organization, the molecular interactions stabilizing the structure of the receptor and factors that can modify those interactions, and the mechanism underlying constitutive activity in the receptor that can cause disease.     

Crystal structure of diammine(malonato)palladium(II)

Diammine(malonato)palladium(II) is synthesized by the reaction of [Pd(NH₃)₄](NO₃)₂ with malonic acid, and its crystal structure is determined by single crystal X-ray diffraction. Distorted coordination square of the Pd(II) atom is formed by two N atoms of two ammonia molecules and two O atoms of bidentate malonate ligand. The average Pd-N and Pd-O distances are 2.018(7) ? and 2.014(2) ?, respectively. The molecules are stacked in such a way that the planes of coordination squares are parallel with the Pd...Pd distances between the nearest neighbors in a stack of 4.039 ?.     

Modelling of microstructure in mesophases

Small-molecule liquid crystals show textures which are readily studied at low magnification in the optical polarizing microscope. In polymeric liquid crystals, however, the textures are often much finer, taxing the microscope's resolution. Nevertheless, studies of microstructure in such polymers have been made and it is apparent that they can differ widely both from small-molecule liquid crystals and, indeed, from polymer to polymer. This paper sets out to account for these variations by exploring the effect on microstructure of the marked differences between the magnitudes of the splay, twist and bend elastic constants which are a characteristic of many liquid crystalline polymers. We report a computer model which simulates the development of microstructure for different ratios of the elastic constants. When these are approximately equal, textures characteristic of small-molecule liquid crystals result, such as those involving escape into the third dimension with the degeneration of line defects into points. When the splay energy is high in comparison with bend and twist, as is the case for many thermotropic liquid crystalline copolyesters, escape does not occur and half integral disclination lines predominate. For simulations involving planar boundary conditions, layered microstructures result, frequently with little matching of the orientation from layer to layer. Within the layers the trajectory of the orienting units is sinuous. This simulated microstructure resembles textures observed in thermotropic copolyesters, studied both in this laboratory and elsewhere. The computer model uses a lattice approach which is similar in some respects to that developed by Lebwohl and Lasher. It should not be thought of as a molecular scale model, however, but rather as one based on assemblies of molecules which share a common director.     

N-terminal and C-terminal domains of arrestin both contribute in binding to rhodopsin

Visual arrestin terminates the signal amplification cascade in photoreceptor cells by blocking the interaction of light activated phosphorylated rhodopsin with the G-protein transducin. Although crystal structures of arrestin and rhodopsin are available, it is still unknown how the complex of the two proteins is formed. To investigate the interaction sites of arrestin with rhodopsin various surface regions of recombinant arrestin were sterically blocked by different numbers of fluorophores (Alexa 633). The binding was recorded by time-resolved light scattering. To accomplish site-specific shielding of protein regions, in a first step all three wild-type cysteines were replaced by alanines. Nevertheless, regarding the magnitude and specificity of rhodopsin binding, the protein is still fully active. In a second step, new cysteines were introduced at selected sites to allow covalent binding of fluorophores. Upon attachment of Alexa 633 to the recombinant cysteines we observed that these bulky labels residing in the concave area of either the N- or the C-terminal domain do not perturb the activity of arrestin. By simultaneously modifying both domains with one Alexa 633 the binding capacity was reduced. The presence of two Alexa 633 molecules in each domain prevented binding of rhodopsin to arrestin. This observation indicates that both concave sites participate in binding.     

Study of Surface Reaction of Spinel Li(4)Ti(5)O(12) during the First Lithium Insertion and Extraction Processes Using Atomic Force Microscopy and Analytical Transmission Electron Microscopy

Spinel lithium titanate (Li(4)Ti(5)O(12), LTO) is a promising anode material for a lithium ion battery because of its excellent properties such as high rate charge-discharge capability and life cycle stability, which were understood from the viewpoint of bulk properties such as small lattice volume changes by lithium insertion. However, the detailed surface reaction of lithium insertion and extraction has not yet been studied despite its importance to understand the mechanism of an electrochemical reaction. In this paper, we apply both atomic force microscopy (AFM) and transmission electron microscopy (TEM) to investigate the changes in the atomic and electronic structures of the Li(4)Ti(5)O(12) surface during the charge-discharged (lithium insertion and extraction) processes. The AFM observation revealed that irreversible structural changes of an atomically flat Li(4)Ti(5)O(12) surface occurs at the early stage of the first lithium insertion process, which induces the reduction of charge transfer resistance at the electrolyte/Li(4)Ti(5)O(12) interface. The TEM observation clarified that cubic rock-salt crystal layers with a half lattice size of the original spinel structure are epitaxially formed after the first charge-discharge cycle. Electron energy loss spectroscopy (EELS) observation revealed that the formed surface layer should be α-Li(2)TiO(3). Although the transformation of Li(4)Ti(5)O(12) to Li(7)Ti(5)O(12) is well-known as the lithium insertion reaction of the bulk phase, the generation of surface product layers should be inevitable in real charge-discharge processes and may play an effective role in the stable electrode performance as a solid-electrolyte interphase (SEI).     

Twist grain boundary and frustrated liquid crystal phases

Research into the structures and properties of frustrated liquid crystal phases continues apace. A number of new twist grain boundary phases have been discovered, of particular interest are those with their rod-like molecules inclined to the layer planes, i.e. the TGBC phases. A new anticlinic TGBC phase has also been discovered complimenting the synclinic TGBC phases. In addition a number of smectic blue phases (BP_Sm) have recently been discovered.     

用AFM研究DL-缬氨酸晶体的结构及其表面分子的排列

利用原子力显微镜(AFM)成像技术来观察DL-缬氨酸晶体表面分子的规则排列, 研究表明对映体分子在DL-缬氨酸晶体中相互配对排列, 每个晶胞单元中包含两个对映体分子, 属于具有中心对称结构 群, 整个晶体是消旋的. 通过原子力显微镜对DL-缬氨酸晶体表面重复单元的测量结果与X衍射数据对比, 发现用AFM观察到的DL-缬氨酸晶体中分子表面形貌的规整排列的距离, 同X衍射得出的三斜晶系晶胞参数数据基本一致, 由此判定该晶体属于三斜晶系而不是单斜晶系. 探讨了利用纳米技术的研究手段在分子水平研究生命起源中的手性问题, 在确定的晶面上通过分子周期性结构排列规律, 对DL-缬氨酸晶体表面分子进行手性识别.     

Effect of Bulkiness on Reversible Substitution Reaction at MnII Center with Concomitant Movement of the Lattice DMF: Observation through Single‐Crystal to Single‐Crystal Fashion

The porous coordination polymer ({[Mn(L)H₂O](H₂O)_1.5(dmf)}_n, 1 ) (DMF=N,N‐dimethylformamide) exhibits variety of substitution reactions along with movement of lattice DMF molecule depending upon bulkiness of the external guest molecules. If pyridine or 4‐picoline is used as a guest, both lattice and coordinated solvent molecules are simultaneously substituted (complexes 6 and 7 , respectively). If a bulky guest like aniline is used, a partial substitution at the metal centers and full substitution at the channels takes place (complex 8 ). If the guest is 2‐picoline (by varying the position of bulky methyl group with respect to donor N atom), one Mn^II center is substituted by 2‐picoline, whereas the remaining center is substituted by a DMF molecule that migrates from the channel to the metal center (complex 9 ). Here, the lattice solvent molecules are substituted by 2‐picoline molecules. For the case of other bulky guests like benzonitrile or 2,6‐lutidine, both the metal centers are substituted by two DMF molecules, again migrating from the channel, and the lattice solvent molecules are substituted by these guest molecules (complex 10 and 11 , respectively). A preferential substitution of pyridine over benzonitrile (complex 12 ) at the metal centers is observed only when the molar ratio of PhCN:Py is 95:5 or less. For the case of an aliphatic dimethylaminoacetonitrile guest, the metal centers remain unsubstituted (complex 13 ); rather substitutions of the lattice solvents by the guest molecules take place. All these phenomena are observed through single crystal to single crystal (SC–SC) phenomena.     

Adsorption behavior of repulsive molecules

Recently, it has been shown that adsorption of gases on solid surfaces often leads to repulsive forces between adsorbate molecules. In this paper, adsorption of molecules on a one-dimensional lattice is considered for repulsive interactions between adsorbate molecules. Exact adsorption isotherms are calculated and analyzed for finite and infinite chains of active sites (i.e., a one-dimensional lattice). Although the mathematical solution for the one-dimensional lattice is known for attractive and repulsive systems, the effects of intermolecular repulsions on adsorption behavior have not been studied in detail previously. Similarly, though the mathematics for the one-dimensional lattice has been solved for any arbitrary lattice length, the effect of finite size on adsorption isotherms for repulsive adsorbate interactions has never been examined. This paper shows that spatial confinement and strong attraction to active sites can cause compression of an adsorbed phase and that repulsive interactions between adsorbed molecules result in steps in the adsorption isotherms. For higher chemical potentials, the density increases until saturating at the lattice capacity. These steps in the adsorption isotherm have not been observed in previous studies of lattice systems. For small lattices, the adsorption behavior was found to be fundamentally different for even and odd values of lattice length. Lattices with an even number of lattice sites can have two steps in the adsorption isotherm, whereas systems with an odd number of sites only have a single step occurring at a coverage slightly greater than half the lattice capacity.