Post‐translational glycosylation of proteins play key roles in cellular processes and the site‐specific characterisation of glycan structures is critical to understanding these events. Given the challenges regarding identification of glycan isomers, glycoproteomic studies generally rely on the assumption of conserved biosynthetic pathways. However, in a recent study, we found characteristically different HexNAc oxonium ion fragmentation patterns that depend on glycan structure. Such patterns could be used to distinguish between glycopeptide structural isomers. To acquire a mechanistic insight, deuterium‐labelled glycopeptides were prepared and analysed. We found that the HexNAc‐derived m/z 126 and 144 oxonium ions, differing in mass by H2O, had completely different structures and that high‐mannose N‐glycopeptides generated abundant Hex‐derived oxonium ions. We describe the oxonium ion decomposition mechanisms and the relative abundance of oxonium ions as a function of collision energy for a number of well‐defined glycan structures, which provide important information for future glycoproteomic studies. 相似文献
The isomers of the Man7GlcNAc2 glycan obtained from bovine ribonuclease B have been characterized by ion mobility spectrometry-tandem mass spectrometry (IMS-MS/MS). In these experiments, [Man7 + 2Na]2+ precursors having different mobilities are selected by ion mobility spectrometry and analyzed by MS/MS techniques in an ion trap. The fragmentation spectra obtained for various precursor ions are specific, suggesting the isolation or enrichment of different glycan isomers. One fragment ion with a mass-to-charge ratio (m/z) of 903.8 is found to correspond to the loss of an internal mannose residue of a specific isomer. Extracted fragment ion drift time distributions (XFIDTDs) yield distinctive precursor ion drift time profiles indicating the existence of four separate isomers as proposed previously. 相似文献
Purification and liquid chromatography-tandem mass spectrometry (LC-MS/MS) characterization of glycopeptides, originating from protease digests of glycoproteins, enables site-specific analysis of protein N- and O-glycosylations. We have described a protocol to enrich, hydrolyze by chondroitinase ABC, and characterize chondroitin sulfate-containing glycopeptides (CS-glycopeptides) using positive mode LC-MS/MS. The CS-glycopeptides, originating from the Bikunin proteoglycan of human urine samples, had ΔHexAGalNAcGlcAGalGalXyl-O-Ser hexasaccharide structure and were further substituted with 0-3 sulfate and 0-1 phosphate groups. However, it was not possible to exactly pinpoint sulfate attachment residues, for protonated precursors, due to extensive fragmentation of sulfate groups using high-energy collision induced dissociation (HCD). To circumvent the well-recognized sulfate instability, we now introduced Na+ ions to form sodiated precursors, which protected sulfate groups from decomposition and facilitated the assignment of sulfate modifications. Sulfate groups were pinpointed to both Gal residues and to the GalNAc of the hexasaccharide structure. The intensities of protonated and sodiated saccharide oxonium ions were very prominent in the HCD-MS2 spectra, which provided complementary structural analysis of sulfate substituents of CS-glycopeptides. We have demonstrated a considerable heterogeneity of the bikunin CS linkage region. The realization of these structural variants should be beneficial in studies aimed at investigating the importance of the CS linkage region with regards to the biosynthesis of CS and potential interactions to CS binding proteins. Also, the combined use of protonated and sodiated precursors for positive mode HCD fragmentation analysis will likely become useful for additional classes of sulfated glycopeptides.
Gas chromatography–mass spectrometry has been used to identify long-chain (C8–C18) N-1-alkyl-1,3-propanediamines after derivatization with trifluoroacetic anhydride. Electron impact ionization and negative chemical ionization mass spectra of trifluoroacetylated derivatives of the identified N-1-alkyl-1,3-propanediamines are presented for the first time. The corrosion inhibiting long-chain N-1-alkyl-1,3-propanediamines were applied in the preparation and investigation of a new anticorrosive and antifouling formulation for water–steam circuit of energy systems in the power industry. Using the GC–MS data, it was possible to identify residues of the N-1-alkyl-1,3-propanediamines in complex samples of boiler water from the power plant after solid-phase extraction and acylation. 相似文献
Positive ion ESI-MS has been used to examine the fragmentation pathways of the complex ions of deoxydinucleotides with H^ ,Na^ ,K^ by LCQ instrument.It had been found that the dissociation Varied markedly due to the differences of the base sequence.The alkali-metal ion binding site and the charcaterization of dissociation were directed by the size of metal ion,the sequesce of base and the steric hindrance. 相似文献
A gradient LC–MS method was developed for the identification and characterization of degradants of moexipril using liquid chromatography electrospray ionization tandem mass spectrometry (LC/ESI‐MS/MS). Moexipril was subjected to hydrolysis (acid, base and neutral), oxidation, photolytic and thermal degradation conditions as mentioned in ICH guidelines Q1A (R2). The drug degraded under hydrolysis, oxidation and photolytic conditions, but it was stable under thermal conditions. In total, five degradants were formed and separated on an Agilent XDB C‐18 column (4.6 × 150 mm, 5 μm) in a gradient elution method. Four degradants ( D1 , D2 , D4 and D5 ) under acidic conditions, three degradants ( D2 , D3 and D4 ) under basic conditions and three degradants ( D1 , D4 and D5 ) under neutral and oxidative stress conditions were formed. In addition, two degradants ( D4 and D5 ) were formed under photolytic stress conditions. To elucidate the structures of degradants, fragmentation of moexipril and its degradants was studied using LC–MS/MS experiments and accurate mass measurements (HRMS) data. The fragment ions in the product ion tandem mass spectra of all the degradants were compared with those of moexipril and assigned the probable structures for the degradants. 相似文献
Novel polysiloxanes, with 4-(dialkylamino)pyridine substituents, are characterized by pyrolysis tandem mass spectrometry. These polymers form abundant cyclic oligomeric ions under both desorption electron ionization (DEI) and desorption chemical ionization (DCI) conditions. Product MS/MS spectra of the cyclic ions reveal characteristic fragmentations under low energy collision activated dissociation. Protonated cyclic oligomers higher than the pentamer are mainly due to the proton bound dimers of lower oligomeric units. The cyclic oligomers are shown to have proton affinities greater than 1000 kJ/mole. It is proposed that thermal depolymerization occurs through an intramolecular siloxane bond rearrangement, which is in agreement with a previously proposed "loop mechanism". Markovian statistical calculations are applied to the DCI mass spectral data in order to determine the sequence distribution of siloxane copolymers. Application of this method show that the monomers in the copolymers examined are non-randomly distributed. 相似文献
Based on the LC-ESI/MSn technique, the four pairs of isomers of psoralen and isopsoralen, imperatorin and isoimperatorin, neohesperidin and hesperidin, naringin and narirutin were distinguished mainly by comparison of the relative abundances of their major fragment ions. Because of the effect of the hydrogen on the C8 of psoralen, the intensity of the fragment ion formed by the loss of CO2 was relatively increased. By comparing the abundance of the product ions formed by the loss of CO and 2CO, the isomers ... 相似文献
Protein phosphorylation regulates many cellular processes and pathways, such as cell cycle progression, signal transduction cascades and gene expression. Selective detection of phosphopeptides from proteolytic digests is a challenging and highly relevant task in many proteomics applications. Often phosphopeptides are present in small amounts and need selective isolation or enrichment before identification. Here we report a novel approach to label selectively phospho-Ser/-Thr residues by exploiting the features of a novel linear ion trap mass spectrometer. Using dansyl labelling and MS3 fragmentation, we developed a method useful for the large-scale proteomic profiling of phosphorylation sites. The new residues in the sequence were stable and easily identifiable under general conditions for tandem mass spectrometric sequencing. 相似文献
The importance of gas–solid chromatography on graphitized thermal carbon black (GTCB) as a source of additional data for the positive structural elucidation of novel isomers by gas chromatography–mass spectrometry is discussed. The retention parameters of isomers being investigated were calculated by Kiselev's method (chromatoscopy) to predict the order of their separation on a column packed with GTCB. To extend the possibilities of this method and to improve the accuracy of a prediction of retention parameters, the molecular mechanics was used for the optimization of hypothetical molecular models of isomers required for these calculations. As a test mixture 11 isomers of perhydroanthracene and perhydrophenanthrene were consedered. The predicted elution order from the column packed with GTCB of these isomers, calculated on the basis of molecular models optimized by molecular mechanics appeared to be close to the experiment, whereas the result obtained by a conventional approach appeared to fail. Molecular modeling in chromatoscopy was used for the structural elucidation of novel isomers of perhydroxanthene (PHX) and perhydro-4-thia-s-indacene (PHTI), which were found by GC–MS in reaction mixtures. The evidence for this assignment-based on the obtained GC and MS data, is discussed. 相似文献