A density functional theory study of molecular and dissociative adsorption of H2 on active sites in mordenite

Adsorption and chemisorption of H2 in mordenite is studied using ab initio density functional theory (DFT) calculations. The geometries of the adsorption complex, the adsorption energies, stretching frequencies, and the capacity to dissociate the adsorbed molecule are compared for different active sites. The active centers include a Br?nsted acid site, a three-coordinated surface Al site, and Lewis sites formed by extraframework cations: Na+, Cu+, Ag+, Zn2+, Cu2+, Ga3+, and Al3+. Adsorption properties of cations are compared for a location of the cation in the five-membered ring. This location differs from the location in the six-membered ring observed for hydrated cations. The five-membered ring, however, represents a stable location of the bare cation. In this position any cation exhibits higher reactivity compared with the location in the six-membered ring and is well accessible by molecules adsorbed in the main channel of the zeolite. Calculated adsorption energies range from 4 to 87 kJ/mol, depending on electronegativity and ionic radius of the cation and the stability of the cation-zeolite complex. The largest adsorption energy is observed for Cu+ and the lowest for Al3+ integrated into the interstitial site of the zeolite framework. A linear dependence is observed between the stretching frequency and the bond length of the adsorbed H2 molecule. The capacity of the metal-exchanged zeolite to dissociate the H2 molecule does not correlate with the adsorption energy. Dissociation is not possible on single Cu+ cation. The best performance is observed for the Ga3+, Zn2+, and Al3+ extraframework cations, in good agreement with experimental data.     

Highly acidic mesostructured aluminosilicates assembled from surfactant-mediated zeolite hydrolysis products

The surfactant-mediated hydrolysis of ZSM-5 zeolite affords five-membered ring subunits that can be readily incorporated into the framework walls of a hexagonal mesostructured aluminosilicate, denoted MSU-Z. The five-membered ring subunits, which are identifiable by infrared spectroscopy, impart unprecedented acidity to the mesostructure, as judged by cumene cracking activity at 300 degrees C. Most notably, MSU-Z aluminosilicate made through the base hydrolysis of ZSM-5 in the presence of cetyltrimethylammonium ions exhibits a cumene conversion of 73%, which is 6.7-fold higher than the conversion provided by a conventional MCM-41. This approach to stabilizing zeolitic subunits through surfactant-mediated hydrolysis of zeolites appears to be general. The hydrolysis of USY zeolite under analogous hydrolytic conditions also affords zeolitic fragments that boost the acidity of the mesostructure in comparison to equivalent compositions prepared from conventional aluminosilicate precursors.     

Direct Synthesis of An Aluminosilicate POS Zeolite with Intersecting 12×11×11-Member-Ring Pore Channels by Using a Designed Organic Structure-Directing Agent

Large and extra-large pore zeolites have been widely applied in industrial areas as catalysts, adsorbents, etc. Among them, silica and/or aluminosilicate zeolites have been attracted great attention due to their excellent hydrothermal stability and strong acidity. However, a great deal of zeolite structures are still not available in the form of silica and/or aluminosilicate. Herein, we report the synthesis of pure silica and aluminosilicate large-pore zeolites, denoted as NUD-14 and Al-NUD-14, respectively, by using a designed cation 1-ethyl-4-phenylpyridinium as an organic structure-directing agent (OSDA). NUD-14 has an intersecting 12×11×11-member ring pore system, which is isostructural to the germanosilicate PUK-16 zeolite with a POS topology. The OSDAs can be completely removed from the framework by calcination. NUD-14 and Al-NUD-14 possess excellent acid and hydrothermal stabilities, superior to the germanosilicate POS zeolite. The incorporation of Al into the zeolite framework makes the Al-NUD-14 zeolite possess medium and strong acidities. The successful synthesis of NUD-14 consisting of a rare odd-member ring pore structure may provide a platform for interesting size- and shape-selective catalytic applications.     

Quantum chemical calculation of infrared spectra of acidic groups in chabazite in the presence of water

The changes in the spectra of the acidic group in chabazite are studied by quantum chemical calculations. The zeolite is modeled by two clusters consisting of eight tetrahedral atoms arranged in a ring and seven tetrahedral atoms coordinated around the zeolite OH group. The potential energy and dipole surfaces were constructed from the zeolite OH stretch, in-plane and out-of-plane bending coordinates, and the intermolecular stretch coordinate that corresponds to a movement of the water molecule as a whole. Both the anharmonicities of the potential energy and dipole were taken into account by calculation of the frequencies and intensities. The matrix elements of the vibrational Hamiltonian were calculated within the discrete variable representation basis set. We have assigned the experimentally observed frequencies at approximately 2900, approximately 2400, and approximately 1700 cm(-1) to the strongly perturbed zeolite OH vibrations caused by the hydrogen bonding with the water molecule. The ABC triplet is a Fermi resonance of the zeolite OH stretch mode with the overtone of the in-plane bending (the A band) and the overtone of the out-of-plane bending (the C band). In the B band the stretch is also coupled with the second overtone of the out-of-plane bending. The frequencies at approximately 3700 and approximately 3550 cm(-1) we have assigned to the OH stretch frequencies of a slightly perturbed water molecule.     

Quantum-mechanical simulation of the interaction of aluminum- and boron-containing zeolite clusters with molecules of water and ammonia

Quantum-mechanical computations of zeolite clusters with molecules of water and ammonia have been carried out. The clusters consisted of ten atoms of silicon and aluminum, where one atom of aluminum was also replaced with an atom of boron. Values of the bond length and bond angles have been obtained; the geometry of adsorption complexes and the bond energy for molecules of water and ammonia with atoms of aluminum and boron of a zeolite fragment have been determined. The computed values of bond energy for molecule probes yield the quantitative strength characteristic of zeolite aprotic acid centers.     

Stability of Zn(II) cations in chabazite studied by periodical density functional theory.

The location of the Zn(2+) cation in Zn-exchanged chabazite has been studied by the periodical density functional method. Chabazite was chosen as a zeolite model, because it contains three different types of rings commonly found in the zeolite structures: four-, six-, and eight-membered rings. Two aluminum atoms have been employed to substitute the silicon atoms in the same D6R unit cell of the zeolite framework. This leads to different arrangements for the Br?nsted site pair and the Zn(II) cation. The two Br?nsted sites are found to be more stable when placed in the small ring (4T ring) than in the other rings. This suggests that the most reactive Br?nsted sites are located in the large rings. Two Br?nsted sites are most stable when the O(H)-Al-O-Si-O(H)-Al sequence is followed in the same ring instead of being located in two different rings. This resembles the aluminum distribution in the small four-membered ring and agrees with bond order conservation rules. The cation stability is markedly influenced by the distortions of the framework. Other factors that also contribute to the stabilization are the aluminum content near the cation and the stability of the original Br?nsted sites. The Zn(2+) cation is more stable in the large rings than in the small ones, the six-membered one being the most stable configuration. In the small rings, the cation is, therefore, more reactive. Two different probe molecules have been used to study the interaction with the Zn(II) cation: water and methane. These probe molecules can extract the active center from its original position. For the water molecule, this effect is large and leads to a high framework relaxation. The value of the binding energy of this molecule to the active sites is influenced by these framework relaxations as well as by the cationic position environment. For weakly interacting methane, these effects are significantly less.     

Experimental and theoretical studies on carbon-nitrogen clusters C2nN7-

C(2n)N7(-) cluster ions are produced by laser ablating on the K(3)[Fe(CN)6] sample. DFT calculations have been performed for these cluster anions. Various isomeric structures of these clusters are optimized and their energies are compared to find the most stable isomers. The most stable structure for C8N7(-) is similar to that of adenine by theoretical calculation, which is in agreement with the collision-induced dissociation (CID) experimental results. With the increasing even numbers of C atoms from 8 to 16, the N atoms in the double-ring structure are gradually substituted by C atoms from the six-membered ring to the five-membered ring. All these C(2n)N7(-) (n = 3-9) clusters exhibit planar aromatic characters. The energy difference and incremental binding energy analyses show that C(2n)N7(-) (n = 4-8) clusters are more stable than C6N7(-) and C18N7(-), which are consistent with the observed mass spectrum.     

A DFT study of model complexes of zinc hydrolases and their inhibition by hydroxamic acids

DFT calculations carried out on zinc acetate and zinc hydroxamates using the Hartree-Fock and B3LYP methods with the 6-311+G basis set give a series of stable pseudotetrahedral chelates (ZnL(2)) (L = OAc, FA, AA, NMeAA, GA, SA). Addition of a water molecule to these chelates gives the hydrates, ZnL(2).H(2)O, which in all cases are energetically more stable than the corresponding chelate. Hydrates formed from O,O coordinated hydroxamate species with a five-membered chelate ring contain water molecules occupying vacant coordination sites of the zinc atom. In contrast, those formed from zinc chelates with four-membered chelate rings contain a water molecule inserted into the chelate ring to give a six-membered ring in which one hydrogen of the water molecule is H-bonded to an oxygen atom of the zinc chelate with the water oxygen strongly bonded to the zinc. A slight lengthening of the H-bonded O-H bond suggests incipient hydroxide activation of water by zinc. In contrast, the O,O bonded hydroxamates do not incorporate water into the chelate ring nor activate the water in accordance with the ability of hydroxamic acids to inhibit zinc containing metalloenzymes.     

氮笼N12的量子化学研究

采用量子化学从头算方法研究了7个氮笼N₁₂,其中包括以前文献中研究过的两个氮笼N₁₂.在RHF/6-31G^*理论水平下进行全构型优化、振动频率分析和热化学计算.计算结果表明,7个结构均是势能面上的局域极小点.N₁₂(D_3d)是所有7个笼状异构体中最稳定的.能量分析表明,如果这些分子能够被合成,将会成为潜在的高能量密度材料.     

镧改性提高ZSM-5分子筛水热稳定性

基于12T 团簇模型, 利用密度泛函理论(DFT)研究了ZSM-5 分子筛的水解脱铝机理以及镧改性提高ZSM-5分子筛水热稳定性的机理. 对未改性分子筛水解脱铝机理的研究表明, 首先是第一个水分子吸附在分子筛表面的酸性位上, 对分子筛的Al—O键起弱化作用, 使Al—O键伸长; 接着第二个水分子吸附到分子筛表面,分别与第一个水分子和分子筛骨架形成氢键, 进一步弱化与其最邻近的Al—O键, 并引致该键断裂. 同样, 其它的三个Al—O键也被削弱并逐一断裂, 从而发生分子筛水解脱铝现象. 引入的镧物种与分子筛骨架的四个O原子成键, 将铝包埋, 增加了分子筛孔壁厚度, 增大了水分子攻击铝的空间位阻, 抑制了水分子对Al—O键的弱化, 从而延缓Al—O键的断裂, 提高分子筛的水热稳定性. 计算的水分子吸附能和水解能进一步证实镧的引入提高了ZSM-5分子筛的水热稳定性.     

Structures of lithiated lysine and structural analogues in the gas phase: effects of water and proton affinity on zwitterionic stability

The structures of lithiated lysine, ornithine, and related molecules, both with and without a water molecule, are investigated using both density functional theory and blackbody infrared radiative dissociation experiments. The lowest-energy structure of lithiated lysine without a water molecule is nonzwitterionic; the metal ion interacts with both nitrogen atoms and the carbonyl oxygen. Structures in which lysine is zwitterionic are higher in energy by more than 29 kJ/mol. In contrast, the singly hydrated clusters with the zwitterionic and nonzwitterionic forms of lysine are more similar in energy, with the nonzwitterionic form more stable by only approximately 7 kJ/mol. Thus, a single water molecule can substantially stabilize the zwitterionic form of an amino acid. Analogous molecules that have methyl groups attached to either the N-terminus (NMeLys) or the side-chain amine (Lys(Me)) have proton affinities greater than that of lysine. In the lithiated clusters with a water molecule attached, the zwitterionic forms of NMeLys and Lys(Me) are calculated to be approximately 4 and approximately 11 kJ/mol more stable than the nonzwitterionic forms, respectively. Calculations of the potential-energy pathway for interconversion between the different forms of lysine in the lithiated complex indicate multiple stable intermediates with an overall barrier height of approximately 83 kJ/mol between the lowest-energy nonzwitterionic form and the most accessible zwitterionic form. Experimentally determined binding energies of water are similar for all these complexes and range from 57 to 64 kJ/mol. These results suggest that loss of a water molecule from the lysine complexes is both energetically and entropically favored compared to interconversion between the nonzwitterionic and zwitterionic structures. Comparisons to calculated binding energies of water to the various structures show that the experimental results are most consistent with the nonzwitterionic forms.     

A Quantum Chemical Study of N14 Cluster

Ab initio molecular orbital theory and density functional theory have been employed to study N₁₄ cluster with low spin at the HF/6-31G*, B3LYP/6-31G*, B3PW91/6-31G*, BP86/6-31G*, and BHLYP/6-31G* levels of theory. Twelve isomers were studied, including one previously investigated cage molecule. The most stable isomer of N₁₄ is a C _2h -symmetric molecule that contains two separated five-membered nitrogen rings connected by a —N=N—N=N— bridge. The second, third, and fifth most stable isomers each have one five-membered nitrogen ring. The theoretical results suggest that the five-membered nitrogen ring gives rise to a particularly stable structural unit, and the more side chains that the five-membered nitrogen ring links with, the less stable the structure will become.     

CnH2nCl+ ion formation in electron impact MS conditions: a theoretical study

The mass spectral fragmentation of different 1-chloroalkanes (of the 1-chlorohexane-1-chlorooctadecane series) has been investigated, quantifying the relative abundance of the fragment ions. The base peak is dominantly at m/z 91, 93 in each investigated case, although with the increasing chain length, its contribution to the total ion current exhibits some reduction. Among the possible fragmentation products, the five-membered chloronium containing ring is the most stable as measured by an isodesmic reaction, although the six-and seven-membered rings exhibit only slightly reduced stability. The most stable structure of the 1-chlorohexane radical cation has a hydrogen bonded structure with the involvement of chlorine and the H_C(δ), pre-forming the five-membered cationic ring. Accordingly, among the reactions leading to alkyl (or H) radical and a chloronium containing ring, this transition structure has the lowest energy, providing explanation for the experimental observations.     

不同活化方法对天然硅铝矿物活化及分子筛合成效果的影响

选取了高岭土、累托土、蒙脱土和伊利石四种天然硅铝矿物,采用热活化、碱熔活化、亚熔盐活化及拟固相活化四种方法对上述四种矿物分别进行活化,对比了不同活化方法对天然硅铝矿物活化效果的影响。结果表明,亚熔盐活化及拟固相活化都具有良好的活化效果,而且能耗较低,明显优于热活化和碱熔活化。其中,拟固相活化由于能耗更低且更有利于实现工业操作,因此,是最具发展前景的天然硅铝矿物活化方法。对比四种天然硅铝矿物,高岭土、累托土及蒙脱土的晶相结构更容易被解聚,而伊利石稳定性更高,经亚熔盐活化及拟固相活化后,活化产物中也只有极少量的高反应活性的硅、铝物种,因此,伊利石不是理想的分子筛合成原料。     

The crystal and molecular structure ofexo-1,7-dichloro-8,8,9,9,10,10-hexafluoro-3,4-benzotricyclo[5.3.0.02,6]decene-3

The crystal structure of the title molecule has been determined by single crystal X-ray diffraction method. The molecule crystallizes in the orthorhombic space group Pbca with unit-cell dimensions a = 21.872(8), b = 11.815(6), c = 10.785(6) Å, and Z = 8. The structure has been solved by MULTAN and refined by least-squares calculations to R = 7.62% for 2088 reflections measured by a diffractometer. The molecule has the exo configuration. The central cyclobutane ring is nearly planar. The two five-membered rings are of the envelope conformation. The dihedral angle between the cyclobutane ring and the terminal five-membered ring is 75.5° and that between the cyclobutane ring and the other five-membered ring is 62.2°.     

Theoretical analysis of pyridine protonation in water clusters of increasing size.

The protonation of pyridine in water clusters as a function of the number of water molecules was theoretically analyzed as a prototypical case for the protonation of organic bases. We determined the variation of structural, bonding, and energetic properties on protonation, as well as the stabilization of the ionic species formed. Thus, we used supermolecular models in which pyridine interacts with clusters of up to five water molecules. For each complex, we determined the most stable unprotonated and protonated structures from a simulated annealing at the semi ab initio level. The structures were optimized at the B3LYP/cc-pVDZ level. We found that the hydroxyl group formed on protonation of pyridine abstracts a proton from the ortho-carbon atom of the pyridine ring. The "atoms in molecules" theory showed that this C-H group loses its covalent character. However, starting with clusters of four water molecules, the C-H bond recovers its covalent nature. This effect is associated with the presence of more than one ring between the water molecules and pyridine. These rings stabilize, by delocalization, the negative charge on the hydroxyl oxygen atom. Considering the protonation energy, we find that the protonated forms are increasingly stabilized with increasing size of the water cluster. When zero-point energy is included, the variation follows closely an exponential decrease with increasing number of water molecules. Analysis of the vibrational modes for the strongest bands in the IR spectra of the complexes suggests that the protonation of pyridine occurs by concerted proton transfers among the different water rings in the structure. Symmetric water stretching was found to be responsible for hydrogen transfer from the water molecule to the pyridine nitrogen atom.     

Water mediated proton transfer in a mesostructured aluminosilicate framework: an ab initio molecular dynamics study

The proton transfer process mediated by water molecules adsorbed in an aluminosilicate framework has been studied using ab initio molecular dynamics simulations. This investigation has been carried out using a quasi-one-dimensional model simulating the mesoporous aluminosilicate channel structures. The effects of both the water loading and temperature of the system have been considered. At low coverage (one water molecule per acid site), the hydroxonium ion (H(3)O)(+) is found to be a transition state, in agreement with earlier studies on zeolites. At a higher water coverage (two water molecules per acid site), the (H(5)O(2))(+) species and the hydrogen bonded "neutral complex" structure are both found to be stable complexes at finite temperatures. The vibrational frequency spectrum is simulated by performing a Fourier transform of the velocity autocorrelation function (VAF), and the peak positions in the VAF are compared with IR measurements and zero-temperature calculations.     

A new approach to the determination of atomic-architecture of amorphous zeolite precursors by high-energy X-ray diffraction technique

The structure of amorphous precursor species formed under hydrothermal conditions, prior to the onset of crystallization of microporous aluminosilicate zeolites, is determined employing high-energy X-ray diffraction (HEXRD). The investigation, combined with the use of reverse Monte Carlo modelling suggests that even numbered rings, especially 4R (R: ring) and 6R, which are the dominant aluminosilicate rings in zeolite A, have already been produced in the precursor. The model implies that the formation of double 4Rs occurs at the final step of the crystallization of zeolite A.     

Growth pattern and electronic properties of acetonitrile clusters: a density functional study

We report a systematic theoretical study on the growth pattern and electronic properties of acetonitrile clusters [(CH(3)CN)(n) (n = 1, 9, 12)] using density functional approach at the B3LYP6-31++G(d,p) level. Although we have considered a large number of configurations for each cluster, the stability of the lowest energy isomer was verified from the Hessian calculation. It is found that the lowest energy isomer of the dimer adopts an antiparallel configuration. For trimer and tetramer, cyclic ring structures were found to be favored over the dipole stabilized structure. In general, it is found that the intermolecular CH...N interactions play a significant role in the stabilization of the cyclic layered geometry of acetonitrile clusters. A critical comparison between trimer and tetramer clusters suggests that the three member cyclic ring is more stable than four member rings. The growth motif for larger clusters (n = 5-9, 12) follows a layered pattern consisting of three or four membered rings, which, in fact, is used as the building block. Based on the stability analysis, it is found that clusters with an even number of molecular entities are more stable than the odd clusters, except trimer and nonamer. The exceptional stability of these two clusters is attributed to the formation of trimembered cyclic rings, which have been found to form the building blocks for larger clusters.     

One water molecule stabilizes the cationized arginine zwitterion

Singly hydrated clusters of lithiated arginine, sodiated arginine, and lithiated arginine methyl ester are investigated using infrared action spectroscopy and computational chemistry. Whereas unsolvated lithiated arginine is nonzwitterionic, these results provide compelling evidence that attachment of a single water molecule to this ion makes the zwitterionic form of arginine, in which the side chain is protonated, more stable. The experimental spectra of lithiated and sodiated arginine with one water molecule are very similar and contain spectral signatures for protonated side chains, whereas those of lithiated arginine and singly hydrated lithiated arginine methyl ester are different and contain spectral signatures for neutral side chains. Calculations at the B3LYP/6-31++G** level of theory indicate that solvating lithiated arginine with a single water molecule preferentially stabilizes the zwitterionic forms of this ion by 25-32 kJ/mol and two essentially isoenergetic zwitterionic structure are most stable. In these structures, the metal ion either coordinates with the N-terminal amino group and an oxygen atom of the carboxylate group (NO coordinated) or with both oxygen atoms of the carboxylate group (OO coordinated). In contrast, the OO-coordinated zwitterionic structure of sodiated arginine, both with and without a water molecule, is clearly lowest in energy for both ions. Hydration of the metal ion in these clusters weakens the interactions between the metal ion and the amino acid, whereas hydrogen-bond strengths are largely unaffected. Thus, hydration preferentially stabilizes the zwitterionic structures, all of which contain strong hydrogen bonds. Metal ion size strongly affects the relative propensity for these ions to form NO or OO coordinated structures and results in different zwitterionic structures for lithiated and sodiated arginine clusters containing one water molecule.