2-Benzazepines. 7. Synthesis of pyrimido[5,4-d][2]benzazepines

Two novel syntheses of pyrimido[5,4-d][2]benzazepines are described. The first synthesis started with 3-phenylphthalide which in three steps was converted to a functionalized pyrimidine which was cyclized to give the 2-benzazepine ring system. The second approach used o-benzoylbenzoic acid methyl ester as the starting material, which in four steps was converted to a functionalized pyrimidine which was cyclized to give a 2-benzazepine. Pyrimido[5,4-d][2]benzazepines have been found to have activity in standard central nervous system (CNS) pharmacological tests.     

Nucleotides. Part XXV. Chemical synthesis of the hexaribonucleotide C-A-A-C-C-A

The chemical synthesis of the ribo-hexamer C-A-A-C-C-A has been achieved by two different routes applying the phosphotriester approach and using the (p-nitrophenyl)ethyl group for phosphate protection. The 2′-hydroxy groups as well as the terminal 2′,3′-diol function have been blocked by the (tert-butyl) dimethylsilyl group as permanent protection throughout all the synthetic steps with great success. Final deblocking of all protective groups could be performed with 80% yield to give the hexamer 23 . The various protected intermediates have been characterized by elemental analysis and UV spectra.     

Complexes of nickel(II) withS-carboxyalkyl-L-cysteines in aqueous medium. Determination of enthalpies by thermometric titrimetry

Summary Molar heats for the reaction of nickel(II) with sulphur-containing amino acids,S-carboxymethyl-L-cysteine andS-carboxyethyl-L-cysteine, have been determined by thermometric titrimetry. The data refer to aqueous solutions at 25°C andI=2.0m. From these enthalpies and equilibrium constants, the corresponding entropies have been calculated. The present thermodynamic data are complementary to previous spectrophotometric data in explaining the structures of the complexes. In particular, the importance of solute-solvent external factors in determining different stabilities for successive steps of complex-formation is stressed.     

Synthesis and photochemical properties of porphyrie-quinone compounds

The results of studies on the synthesis of porphyrin-quinone compounds and investigation of their photochemical properties are summarized. Effects of various factors (the redox potential, the distance between donor and acceptor moieties, their spatial orientation, the free energy of the reaction, and solvents) on the photoinduced electron transfer in these model systems are discussed. The dyad and triad model systems have been compared. The possibility of using these systems for modeling the primary steps of photosynthesis is discussed.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1. pp. 9–24, January, 1996.     

Thermotropic liquid crystalline polymers. I. Cholesterol-containing polymers and copolymers

An approach to the creation of thermotropic cholesterol-containing liquid crystalline polymers by the chemical binding of cholesterol molecules with side chains of comblike polymers is presented. This type of structure permits a decrease in the steric hindrances provided by the backbone chains for the purpose of realizing the liquid crystalline state. A number of new cholesteric esters of poly(N-methacryloyl-ω-aminocarbonic acid)s (PChMAA-n) with different side-chain lengths (n = 2–11) as well as a series of copolymers of ChMA-n with n-alkylacrylates and n-alkylmethacrylates have been synthesized. The experimental evidence of liquid crystalline structure formation in these polymers in glass, viscoelastic, and fluid states is discussed. Molecular and supermolecular structures of cholesterol-containing comblike polymers have been studied and the model of macromolecular packing in the liquid crystalline state is proposed. It is shown that the existence of a layered order of side methylene groups together with ordering of cholesterol groups is necessary to the production of the liquid crystalline state in these polymers.     

MO-Studies of enzyme reaction mechanisms. I. Model molecular orbital study of the cleavage of peptides by carboxypeptidase A

Ab initio and semiempiridal (AM1) molecular orbital theory has been used to model the cleavage of formamide at the active site of carboxypeptidase A. The model active site consists of a zinc dication coordinated to two imidazoles, an acetate, a water with a hydrogen-bonded formate, and a formamide molecule as model substrate. AM1 has been compared with ab initio theory for the coordination of water and formamide to Zn⁺⁺ and found to give excellent energetic results. The course of the amide cleavage was therefore calculated with AM1. The first step of the reaction is the dissociation of the zinc-coordinated water to give an active ZnOH⁺ species. The remote formate acts as proton acceptor. This process has an activation energy of only 4.6 kcal mol^?1. The next and rate-determining step is the concerted addition of the ZnOH⁺ moiety to the formamide C?O bond. The Zn? O distance in the transition state is more than 3 Å. In four further steps, the amide nitrogen is protonated and the C? N bond cleaved. The net activation energy for the entire process is 15.5 kcal mol^?1 relative to the active site model and 19.6 kcal mol^?1 relative to the most stable point on the calculated reaction profile.     

Spectroscopic study of rigid-rod polymers. I. Structures of model compounds

Poly(p-phenylene benzbisoxazole) and poly(p-phenylene benzbisthiazole) belong to the class of extended-chain, rigid-rod polymers possessing high modulus, high strength, and good thermal and oxidative resistance. Fibers and films of these polymers are processed from anisotropic solutions in strong acids such as methane sulfonic acid or polyphosphoric acid. The electronic absorption and vibrational spectra of the model compounds have been investigated in order to characterize the structures in the solid state and in nonprotonic solvents. The dramatic intensity differences in the spectra obtained have been interpreted by variations in the dihedral angle between the plane of the phenyl group and the plane of the central heterocyclic ring which affect the resonance configuration between the two rings.     

Protected versus unprotected dextran macroinitiators for ATRP synthesis of Dex‐g‐PMMA

The synthesis of amphiphilic dextran‐g‐poly(methyl methacrylate) glycopolymers (Dex‐g‐PMMA) is studied using “grafting from” concept and atom transfer radical polymerization. Two strategies have been examined to control the macromolecular parameters of such glycopolymers. One is involving four steps including a protection/deprotection approach and the second one only two steps. The introduction of initiators group onto a protected acetylated dextran (and directly onto dextran) was achieved resulting in protected DexAcBr (and in unprotected DexBr). These two types of polysaccharidic macroinitiators differ in term of solubility (hydrophilic DexBr vs. hydrophobic DexAcBr) and of position of the initiators groups on the glucosidic units (which are the sites of the future grafts). When evaluated as macroinitiators for ATRP of MMA, control was achieved in both cases but DexBr gave much faster polymerization and lower average grafting efficiency compared with DexAcBr or model initiator. Advantages and drawbacks of both pathways have finally been discussed. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2010     

First study of rhodium(I) complexes with chiral sulfur-containing terpenoids as catalytic systems for ketone hydrosilylation

Abstract

Using a “chiral pool” approach, a number of chiral thiolate and sulfide ligands based on natural terpenes and terpenoids have been synthesized in a few simple steps. Two new Rh-thiolate complexes with the formula [Rh(CO)₂(μ-SR)]₂ were obtained. The influence of these complexes and catalytic systems formed by combining the synthesized ligands with [Rh(CO)₂(μ-Cl)]₂ and [Rh(cod)(μ-Cl)]₂, on the reaction rate, chemoselectivity, stereoselectivity and formation of tetraphenyldisiloxane in Rh-catalyzed asymmetric hydrosilylation of acetophenone as a model reaction have been studied. Mechanistic aspects of formation of silyl enol ether as a side product in the presence of S-containing ligands are presented.     

High Spin and Anisotropic Molecules Based on Polycyanometalate Chemistry

 This paper points out some recent achievements in the chemistry and physics of high spin and anisotropic molecules based on polycyanometalate complexes. Following a step by step synthetic strategy and using a localized electron orbital model, isotropic high spin molecules were obtained with ground spin states ranging from S = 9/2 to 27/2. In the same way, anisotropic molecules with various nuclearities (bi, tri, tetra, hexa, and hepta-nuclear complexes) have been synthesized. Mixing these two approaches, it has been possible to obtained anisotropic high spin molecules that behave as single molecule magnets. The paper reviews some of the steps that lead to these findings and some of the prospects opened in the field of single molecule magnets.     

Untersuchungen zurFriedel-Crafts-Reaktion. XVI. Darstellung isomerer 2-Acyl- und 3-Acyl-4-methoxyphenole

Acylation of 4-methoxy phenol according toFriedel andCrafts, as well as the rearrangement of its esters according toFries lead always to 2-acyl-4-methoxy phenols or to their demethylated compounds. The unknown 3-acyl-4-methoxy phenols were prepared in two steps: First, the ester is acylated with the corresponding acyl chloride and SnCl₄ in nitromethane. In the second step the resulting ketoesters are hydrolysed. This is a general method. The yields ofmeta-acylphenols are between 40 and 90%. The isomeric 2-acyl-4-methoxy-phenols which were partly unknown or accessible only in low yields have also been prepared for comparative spectral studies (UV, IR, NMR, MS) ofortho- andmeta-acylphenols.

     

Derivatives of benzo[4,5]cyclohepta[1,2-b]thiophene. 4. Synthesis of 1-(9,10-dihydro-4H-benzo[4,5]cyclohepta[1,2-b]thiophen-4-yl)-3-alkylaminoazetidines

Thirteen 1-(9,10-dihydro-4H-benzo[4,5]cyclohepta[1,2-b]thiophen-4-yl)-3-alkylaminoazetidines 11 have been synthesized in three steps from 4-amino-9,10-dihydro-4H-benzo[4,5]cyclohepta[1,2-b]thiophene ( 6 ), which was obtained from the reduction of either 4-azido 4 or 4-hydroxyimino 5 derivatives. All the compounds have been evaluated as potential antidepressive agents.     

Thermal dehydration and decomposition of nickel chloride hydrate (NiCl2·xH2O)

The dehydration and decomposition characteristics of an undried and a partly dried sample of NiCl₂·xH₂O have been investigated by isothermal and non-isothermal (TG and DTA) methods in static air as well as flowing nitrogen environment. While the isothermal weight loss method fails to distinguish between different steps of reaction, TG curves upto 800°C reveal as many as five steps in static air and four steps in nitrogen atmosphere. However, both methods indicate that NiCl₂ is stable upto 400°C above which dehydrochlorination takes place in presence of water vapour. The intermediate products of dehydration and decomposition at different temperatures have been characterized by chemical analysis, X-ray diffraction, infrared and diffuse reflectance spectroscopy. All these methods reveal the presence of water in samples calcined at even 400°–600°C. Thermodynamic functions for different steps of dehydration have been calculated and discussed in the light of the possible structural changes occurring in the partially dehydrated products.The authors wish to express their sincere thanks to Mr. D. N. Dey, Head, Pyrometallurgy Division for his keen interest and constant support during the course of investigation. Thanks are also due to Director, Regional Research Laboratory, Bhubaneswar for his kind permission to publish this paper. One of the authors (S. K. M.) is thankful to the Council of Scientific and Industrial Research, New Delhi for awarding a Junior Research Fellowship.     

Ab initioMODPOT/VRDDO/MERGE calculations on energetic compounds. III. Nitroexplosives: Polyaminopolynitrobenzenes (including DATB,TATB, and tetryl)

Quantum chemical ab initio MODPOT /VRDDO calculations have been carried out on the following aminonitrobenzenes for which crystal structures had been determined experimentally: 4-nitroaniline; N,N-dimethyl-p-nitroaniline; 2,4,6-trinitroaniline; 1,3-diamino-2,4,6-trinitrobenzene (DATB—Form I); 1,3,5-triamino-2,4,6-trinitrobenzene (TATB); 2,3,4,6-tetranitroaniline; N-methyl-N,2,4,6-tetranitroaniline (Tetryl); and N-(β,β,β-trifluoroethyl)-N,2,4,6-tetranitroaniline. These quantum chemical calculations were performed on the molecules in their conformations as found in their crystal structures. The calculations were carried out with our own ab initio programs which also incorporate as options several desirable features for calculations on large molecules: ab initio effective core model potentials (MODPOT) which enable calculations of valence electrons only explicitly, yet accurately, and a charge conserving integral prescreening evaluation (which we named VRDDO-variable retention of diatomic differential overlap) especially effective for spatially extended molecules. Aminonitrobenzenes are especially interesting since there are inherent intramolecular ring distortions and deviations from planarity and intramolecular hydrogen bonds as well as intermolecular hydrogen bonds causing further deviations from planarity. The theoretical indices resulting from the quantum chemical calculations are relevant to a number of properties and behavioral characteristics of these molecules, both intramolecular and intermolecular. The charges on the atoms [from the gross atomic populations (GAP 's)] are needed for calculation of the atomic multipole–atomic multipole electrostatic contributions (a dominant factor) to the intermolecular interaction energies. These electrostatic interaction energies are part of the input necessary for calculations on the crystal packing and densities of these molecules. These GAP 's are also of value in interpreting the experimental photoelectron and ESCA spectra of these molecules. The total overlap populations (TOP 's) between atoms are related to the inherent bond strengths and can serve as a quantitative replacement for the old empirical bond length-bond order-bond energy relationship still used by explosives chemists to identify the “target bonds” (the weakest bonds). The TOP 's are of considerable value in predicting and tracing initiation and subsequent steps of explosive phenomena. The molecular orbital energies of the lowest unoccupied orbitals are of interest since nitroexplosives have been implicated in testicular toxicity and the initial metabolic activation appears to proceed through a one-electron reduction of the nitroexplosive.     

Radicaux libres dérivés de sucres. Partie. VII. Analogues de nucléosides marqués par un spin. Communication préliminaire

Sugar Free Radicals. VIII. Spin-Labeled Nucleosides Analogs A series of 5′-deoxy-5′-hydroxylamino derivatives of adenosine and uridine have been prepared by reduction of the corresponding oxime or nitrone. ‘Second generation’ 3′-deoxy-3′-N-aryl(or N-alkyl) hydroxylamino-β-D -xylofuranosyluracils have also been synthesized by a one-pot reaction including the following elementary steps: deblocking of the starting material, reduction of the 3′-deoxy-3′-oximinouridine, condensation of the resulting hydroxylamine with an aldehyde, reduction of the nitrone formed. The deoxy-hydroxylaminonucleosides oxidized spontaneously in the air (or in presence of traces of PbO₂) to give the corresponding nitroxide free radicals, ESR spectra of which furnished useful informations on their structures. Some of these modified nucleosides bore notable cytotoxic or antiviral activities.     

N‐band Hubbard models. III. Boson–fermion and interaction–boson models for high‐Tc superconductivity

In this series of articles (I, II), N‐band Hubbard models have been considered for strongly correlated electron systems, which are realized in d–p, π–d, π–R, and σ–R conjugated systems. The magnetism and superconductivity of these systems have been elucidated in terms of effective exchange integrals (J), which are calculated by first‐principle methods. In part III of this series, the BCS–BEC crossover theory, has been introduced to elucidate the physical foundation of our J and JP model for the high‐T_c superconductivity (HTSC). The boson–fermion (BF) model for this theory is found useful for a reasonable explanation of the experimental phase diagrams of HTSC. The underlying physics of the BF model is different from that of the slave boson field‐theoretical model assuming spinon–holon condensations in the low dimension. The interaction boson model (IBM) for nuclear matter is also employed to describe the cooperative mechanisms of electron–phonon (EP), spin fluctuation (SF), charge fluctuation (CF), and many‐bands (MB) effects. This phenomenological model is useful for pictorial understanding and for the theoretical explanation of the cooperative mechanisms: (EP + SF), (SF + CF), (EP + SF + MB), etc. These are also investigated in analogy to BF model of fermionic gases, where the Feshbach resonance between boson and fermion is responsible for their coupling. The implications of these theoretical results are discussed in relation to recent ALPES and STM experiments for HTSC, which suggest the contributions of SF (J) and EP (P) interactions. The recently discovered superconductivity of boron‐doped diamond is examined as an example of two‐band sigma‐radical (σ–R) conjugated systems. Finally, the bipolaron model is briefly discussed in relation to boson–fermion model via EP interaction to superconductivity. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Conformational properties of structurally rigid polyamides. I. Conformation of polyamides and model diamides derived from optically active cyclic 1,2-dicarboxylic acids

The conformational equilibria of piperidine diamides derived from five cyclic 1,2-dicarboxylic acids (I–V) have been investigated by dipole moment measurements and a priori conformational energy estimates. Since these diamides represent the building blocks of the polyamides derived from the above cyclic diacids and piperazine or trans-2,5-dimethylpiperazine, the results obtained in the study of the models have been used to investigate the conformation of the polymers. The overall evidence suggests that cyclopentane, cyclohexane, and bicyclooctane piperazine polymers behave as rigid rods in which the structural units possess approximately the same conformational preference exhibited by the respective model diamides.     

Collection and preparation of molecular databases for virtual screening

Drug discovery and development research is undergoing a paradigm shift from a linear and sequential nature of the various steps involved in the drug discovery process of the past to the more parallel approach of the present, due to a lack of sufficient correlation between activities estimated by in vitro and in vivo assays. This is attributed to the non-drug-likeness of the lead molecules, which has often been detected at advanced drug development stages. Thus a striking aspect of this paradigm shift has been early/parallel in silico prioritization of drug-like molecular databases (also database pre-processing), in addition to prioritizing compounds with high affinity and selectivity for a protein target. In view of this, a drug-like database useful for virtual screening has been created by prioritizing molecules from 36 catalog suppliers, using our recently derived binary QSAR based drug-likeness model as a filter. The performance of this model was assessed by a comparative evaluation with respect to commonly used filters implemented by the ZINC database. Since the model was derived considering all the limitations that have plagued the existing rules and models, it performs better than the existing filters and thus the molecules prioritized by this filter represent a better subset of drug-like compounds. The application of this model on exhaustive subsets of 4,972,123 molecules, many of which have passed the ZINC database filters for drug-likeness, led to a further prioritization of 2,920,551 drug-like molecules. This database may have a great potential for in silico virtual screening for discovering molecules, which may survive the later stages of the drug development research.     

High Spin and Anisotropic Molecules Based on Polycyanometalate Chemistry

 This paper points out some recent achievements in the chemistry and physics of high spin and anisotropic molecules based on polycyanometalate complexes. Following a step by step synthetic strategy and using a localized electron orbital model, isotropic high spin molecules were obtained with ground spin states ranging from S = 9/2 to 27/2. In the same way, anisotropic molecules with various nuclearities (bi, tri, tetra, hexa, and hepta-nuclear complexes) have been synthesized. Mixing these two approaches, it has been possible to obtained anisotropic high spin molecules that behave as single molecule magnets. The paper reviews some of the steps that lead to these findings and some of the prospects opened in the field of single molecule magnets. Corresponding author. E-mail: marvaud@ccr.jussieu.fr Received July 19, 2002; accepted July 23, 2002     

Computational modeling of the mechanisms of the free radical-chain reaction of alkanes with oxygen. The oxidation of isobutane,n-butane,and isopentane

A general computational method for obtaining complete solutions of time-dependent kinetic equations has been developed and applied to free radical-initiated reactions of alkanes with oxygen. The method has been applied to the low-temperature, peroxide-initiated oxidations of isobutane and isopentane. Using available independently measured and estimated values for the rate constants and activation parameters for each of the 20 proposed reaction steps for the oxidation of isobutane, the rates and products have been calculated for both the liquid phase and gas phase in the range of 100°–155°C. The calculated rates and products of oxidation agree with published experimental values. The oxidation of isopentane was examined by a 32-reaction model. The rate constants were estimated using values for the appropriate rate steps in the oxidation of n-butane and isobutane. The calculation of the oxidation rate and products agree with our experiments.