Reactivities of heterocyclic amides and thioamides

2-Alkylmercapto-4-hydroxy-3,4,5,6-tetrahydro- and 2-alkylmercapto-3,6-dihydropyrimidines were synthesized by the reaction of substituted 4-hydroxyhexahydro- and 1,2,3,6-tetrahydropyrimidine-2-thiones with alkyl halides. It is shown that the nucleophilic center in the alkylation is the sulfur atom. The capacity of the synthesized compounds for prototropic ring-chain tautomerism was established.     

Synthesis and conformational properties of sugar amides and thioamides

The synthesis of deoxythioformamido and deoxythioacetamido derivatives of 1,2:3,4-di-O-isopropylidene--D-galactopyranose, 1,2:3,5-di-O-isopropylidene--D-glucofuranose, and 2,3:4,5-di-O-isopropylidene-β-D-fructopyranose at the primary carbon atom has been effected by thionation of the corresponding sugar amides. Formamides and thioformamides existed as a mixture of the Z (major) and E (minor) stereomers around the N---C(=X) bond in CDCl₃ solutions, while the Z rotamer was the sole one detected in the cases of acetamides and thioacelamides.     

Structural motifs of diiodine complexes with amides and thioamides

The reaction of 2-pyrimidone hydrochloride ([C(4)H(5)N(2)O](+)[Cl](-) or [PMOH(2)](+)[Cl](-)) with diiodine in a dichloromethane-methanol solution resulted in the formation of ([C(4)H(5)N(2)O](+))(2)[I(2)Cl(2)](2-) (1) complex. The compound was characterized by elemental analysis, FT-IR, DTA-TG and conductivity titrations. The crystal structure of 1 was also determined by X-ray diffraction at 294(1) K. Compound 1 is monoclinic, space group P2(1)/n, consisting of two cationic [PMOH(2)](+) species and a [I(2)Cl(2)](2-) counter dianion. The cation is in its keto form. Direct reaction of thiazolidine-2-thione (tzdtH), with diiodine in dichloromethane solution, on the other hand, led to the formation of a crystalline solid which contained two complexes of formulae [(tzdtH)(2)I](+)[I(3)](-).2I(2) (2) and [(tzdtH)I(2)](2).I(2) (2a) in a ratio of 90 to 10%. Complex 2a was characterized by X-ray analysis at 180(2) K. Compound is monoclinic, space group C2/c and contains two units of [(tzdtH)I(2)] "spoke" structures. Compound 1, as well as the known species iodonium salt [(tzdtH)(2)I](+)[I(3)](-).2I(2) (2) and the charge transfer (CT) iodine complexes of formulae [(bztzdtH)I(2)] (3) and [(bztzdtH)I(2)].I(2) (4) (bztzdtH = 2-mercaptobenzothiazole) with "spoke" and extended "spoke" structures respectively, were tested for their oxidizing activity towards 3,5-di-tert-butylcatechol to 3,5-di-tert-butyl-o-benzoquinone.     

Mild method for the conversion of amides to thioamides

Aqueous ammonium sulfide was found to be an ideal substitute for hydrogen sulfide for the thiolysis of activated amides. High yields of the corresponding thioamides were obtained for a broad range of substrates, using two different procedures that are both operationally simple and inexpensive, as well as amenable to large-scale preparation. Preliminary results indicate that aqueous ammonium sulfide may also replace hydrogen sulfide in the synthesis of thionoesters from amides.     

Nuclear magnetic resonance studies of internal rotation: IV—rotational barriers and conformation of phthalic amides

The rotational barriers about the C? N bond of the N,N,N′,N′-tetramethyldiamides of phthalic, isophthalic and terephthalic acids have been determined by the iterative total line shape NMR method. Some evidence about the conformation of these compounds in solution has also been obtained by infrared and dipole moment studies.     

Conformational populations and rotational barriers in esters

The $\text{trans}$ conformations of methyl, ethyl and isopropyl formate were shown to be present in equilibrium in a polar solvent with the $\text{cis}$ conformations to significant (> 1% 230 K) but much lower extents than for t-butyl formate; rotational barriers for the former compounds are greaters.     

Synthesis of new α-chloroacryl-amides,thioamides and amidines from saturated amides

Chorination of saturated amide-chlorides followed by hydrolysis, thiolysis, aminolysis and catalysed dehydrochlorination leads to α-chloro acrylamide derivatives in high yield. The reaction sequence is applied to lactames and can also be extended to the synthesis of α-chloro acrylthioamide and amidine.     

Temperature coefficient of NH chemical shifts of thioamides and amides in relation to structure

NH chemical shift temperature coefficients have been measured in a large series of N-substituted-3-piperidinethiopropionamides in which the NN distances are short but of varied length, as well as in a couple of the corresponding amides and in some simpler amides and thioamides. Geometries are calculated by means of ab initio DFT methods. The N-substituted-3-piperidinethiopropionamides show in most cases strong intramolecular N–HN hydrogen bonds according to IR spectra and ab initio calculations. For compounds with rather short NN distances the S=C–N–H moiety is non-planar. Dihedral angles as small as 160° are found. The NH chemical shift coefficients measured in non-polar solvents in all the N-substituted-3-piperidinethiopropionamides are more negative (−8 to −17 ppb/K) than in non-hydrogen bonded thioamides. For the latter in non-polar solvents like CDCl₃ and toluene the temperature coefficients are as small as −1 to −4 ppb/K. The large negative effects can be related not only to the non-planarity of the thioamide group in a way that the more pronounced the non-planarity the more negative the temperature coefficients, but also to strong hydrogen bonding and the fact that the acceptor is a nitrogen. For similar amides with non-planar amide groups and nitrogen acceptor large negative temperature coefficients are likewise seen. In polar solvents like DMF the effects in simple thioamides are uniform and close to −6 ppb/K, whereas in the more complex compound like 4p(t) the temperature coefficient is close to 0. An essential feature of measuring temperature coefficients of compounds without strong intramolecular hydrogen bonds in non-polar solvents and at low temperatures is to keep the concentration low enough to avoid dimerisation.     

Calculation of rotational barriers in amorphous polymers

The Monte Carlo method was used for generation of amorphous polyethylene configurations on a diamond lattice. Chain building was performed on the tetrahedral lattice of edges 36, 62 and 43 Å with periodic boundary conditions imposed.32 chains were generated, each with a length of 100 CH₂-groups (resulting density = 0.81 g·cm⁻³). Small spherical volumes with a radius of 10 Å were chosen at random from the total volume for the calculation of rotational barriers. The rotating bond was chosen to be close to the center of this sphere. We employed the method of molecular mechanics in order to calculate the rotational barriers. The calculation was made for 578 rotating bonds and the obtained distribution of rotational barriers is approximated by the corresponding Γ-distribution.     

Hyperconjugation effect on diene reactivity in 1-methyltetrazolo[5,1-a]isoindole-derived amides and thioamides

Optimized synthesis of 1-methyltetrazolo[5,1-a]isoindole-derived amides and thioamides was elaborated. Based on ¹³C NMR spectroscopy and X-Ray diffraction studies data, it was proposed that zwitterionic resonance structures contributed significantly to the structure of these compounds. Geometry optimization was performed in vacuo using m06-2x/cc-pvtz method taking into account polarizing effect of environment (PCM model) and specific intermolecular interactions. Electronic density distribution in these molecules was analyzed using NBO method. Using Δ(HOMO_diene–LUMO_dienophile) for amides and thioamides in vacuo and in a protic solvent, possibility of Diels–Alder reaction was evaluated. Energies of π-π conjugation and n→σ* hyperconjugation for the amide derivative were estimated in vacuo, aprotic and protic solvents.     

Unusual aryl-porphyrin rotational barriers in peripherally crowded porphyrins

Previous studies of 5,10,15,20-tetraarylporphyrins have shown that the barrier for meso aryl-porphyrin rotation (DeltaG++(ROT)) varies as a function of the core substituent M and is lower for a small metal (M = Ni) compared to a large metal (M = Zn) and for a dication (M = 4H(2+)) versus a free base porphyrin (M = 2H). This has been attributed to changes in the nonplanar distortion of the porphyrin ring and the deformability of the macrocycle caused by the core substituent. In the present work, X-ray crystallography, molecular mechanics (MM) calculations, and variable temperature (VT) (1)H NMR spectroscopy are used to examine the relationship between the aryl-porphyrin rotational barrier and the core substituent M in some novel 2,3,5,7,8,10,12,13,15,17,18,20-dodecaarylporphyrins (DArPs), and specifically in some 5,10,15,20-tetraaryl-2,3,7,8,12,13,17,18-octaphenylporphyrins (TArOPPs), where steric crowding of the peripheral groups always results in a very nonplanar macrocycle. X-ray structures of DArPs indicate differences in the nonplanar conformation of the macrocycle as a function of M, with saddle conformations being observed for M = Zn, 2H or M = 4H(2+) and saddle and/or ruffle conformations for M = Ni. VT NMR studies show that the effect of protonation in the TArOPPs is to increase DeltaG++(ROT), which is the opposite of the effect seen for the TArPs, and MM calculations also predict a strikingly high barrier for the TArOPPs when M = 4H(2+). These and other findings suggest that the aryl-porphyrin rotational barriers in the DArPs are closely linked to the deformability of the macrocycle along a nonplanar distortion mode which moves the substituent being rotated out of the porphyrin plane.     

On the structure of thioamides and their derivatives: Part XXXIV molecular mechanics calculations of factors influencing the barriers to internal rotation in thioamides

Molecular mechanics calculations were performed on thioamides and used to investigate the influence of electronic and steric factors on the barrier to internal rotation. The different values of relative strain energies are discussed in terms of free enthalpies of activation.     

A facile and convenient method for the conversion of thioamides into amides using pyridinium hydrobromide perbromide

Selective transformation of thioamides to their corresponding carbonyl compounds are performed in high to excellent yields under mild conditions using pyridinium hydrobromide perbromide (PHBP) as a mild and efficient reagent. Correspondence: Moslem M. Lakouraj, Department of Organic Chemistry, Faculty of Chemistry, Mazandaran University, Babolsar 47416, Iran.     

Geometries and rotational barriers of alkylamides and lithium alkylamides.

The barriers to rotation of methylamide, ethylamide and the corresponding lithium amides have been computed at the $\text{ab}$$\text{initio}$ 4-31G level. The barriers to rotation about the CN bond are higher for amides than for amines, but are lowered by coordination with Li⁺.     

Conformation and rotational barriers of 2-substituted 1,3-diphenylallyl anions

The conformations and the rotational barriers of the 2-substituted 1,3-diphenylallylanions $\text{1b}$–$\text{g}$ (Tab. 2) have been determined. Increasing size of the substituents leads to more $\text{exo}$,$\text{endo}$- and $\text{endo}$,$\text{endo}$-conformers at the cost of the $\text{exo}$,$\text{exo}$-species. This trend is connected with decreasing ΔG³-value sof the rotational barriers; the barriers are essentially not affected by ion pair effects, which is in contrast to the parent “allyl anion”.     

The nature of the rotational barriers in simple carbonyl compounds

The rotational barriers around the CO and CC bonds are investigated in formic acid, ethanedial and glycolaldedyde molecules on the basis of DFT-B3LYP/aug-cc-pVDZ calculations. Natural bond orbitals analysis is applied to enhance physical understanding of rotational barriers. In the case of attractive barriers in formic acid and Gc-glycolaldehyde, the barrier originates from the loss of hyperconjugation that determines the equilibrium structures while for the repulsive barriers in ethanedial and Go-glycolaldehyde, both Lewis and hyperconjugation terms contribute.     

Semiempirical calculations of ground state properties and rotational barriers in conjugated ethylenes

Ground state properties of methyl-2-carbomethoxy-3-dimethylaminoacrylate 4, and methyl-2-carbomethoxy-3-(1-aziridino) acrylate 5 were calculated by semiempirical methods and found to be in good agreement with the experiment. Barriers to rotation about the CC double bond and the C-N single bond were also calculated, allowing for structure relaxation in the transition state. A comparison of the calculated and experimental barriers to rotation shows good agreement for the rotation about the C-N bond and poor agreement for the rotation about the CC bond. This discrepancy is explained in terms of solvent stabilization of the polar transition state.