Cis- and trans-3-hexene: infrared spectrum in liquid argon solution, ab initio calculations of equilibrium geometry, normal coordinate analysis, and vibrational assignments

The infrared spectra of cis-3-hexene and trans-3-hexene dissolved in liquid argon have been obtained at temperatures from 93 to 120 K. The absorptions were observed with a low-temperature cell and a Fourier transform infrared spectrophotometer. Ab initio molecular orbital calculations were performed to obtain the equilibrium geometry, vibrational frequencies, force fields, and infrared intensities. The calculations were done at the Hartree-Fock level using 6-31G basis set. The Cartesian force fields from ab initio calculations have been converted to the force field in symmetry coordinates. The scale factors of ab initio calculated force fields were determined. Normal coordinate calculations were performed using a scaled quantum mechanical (SQM) force field. Vibrational normal modes calculated for the lowest energy rotamers of cis- and trans-3-hexene have been assigned to infrared absorption bands observed in liquid argon solution. The assignments were based on calculated frequencies and potential energy distributions. The equilibrium geometries of the two lowest energy rotamers (symmetry C₂ and C_s) of cis-3-hexene and of the three lowest energy rotamers (symmetry C_i, C₂, and C₁) of trans-3-hexene were calculated. Variable temperature studies of the infrared spectrum of cis- and trans-3-hexenes dissolved in liquid argon were done to obtain the ΔH of conversion between the rotamers C₂ and C_s of cis-3-hexene and between the rotamers C_i, C₂, and C₁ of trans-3-hexene.     

Structure and conformational stability of CH2CHCH2X (X=F, Cl and Br) molecules—post Hartree–Fock and density functional theory methods

The molecular structure and conformational stability of CH₂CHCH₂X (X=F, Cl and Br) molecules were studied using ab initio and density functional theory (DFT) methods. The molecular geometries of 3-fluoropropene were optimized employing BLYP and B3LYP levels of theory of DFT method implementing 6-311+G(d,p) basis set. The MP2/6-31G^*, BLYP and B3LYP levels of theory of ab initio and DFT methods were used to optimize the 3-chloropropene and 3-bromopropene molecules. The structural and physical parameters of the molecules are discussed with the available experimental values. The rotational potential energy surface of the above molecules were obtained at MP2/6-31G^* and B3LYP/6-311+G(d,p) levels of theory. The Fourier decomposition of the rotational potentials were analyzed. The HF/6-31G^* and MP2/6-31G^* levels of theory have predicted the cis conformer as the minimum energy structure for 3-fluoropropene, which is in agreement with the experimental values, whereas the BLYP/6-311+G(d,p) and B3LYP/6-311+G(d,p) levels of theory reverses the order of conformation. The ΔE values calculated for 3-chloropropene at MP2/6-31G^*, BLYP/6-311+G(d,p) and B3LYP/6-311+G(d,p) levels of theory show that the gauche form is more stable than the cis form, which is in agreement with the experimental value. The same levels of theory have also predicted that the gauche form is stable than cis for 3-bromopropene molecule. The maximum hardness principle has been able to predict the stable conformer of 3-fluoropropene at HF/6-31G^* level of theory, but the same level of theory reverses the conformational stability of 3-chloropropene and 3-bromopropene molecules and MP2/6-31G^* level of theory predicted the stable conformer correctly.     

Kinetische und mechanistische untersuchungen von übergangsmetallkomplex-reaktionen : IX. Substitution von CO durch PPh3 in aminocarbinkomplexen: Präparative und kinetische untersuchungen

Pentacarbonyl(diethylaminocarbyne)chromium tetrafluoroborate, [(CO)₅₋ CrCNEt₂]BF₄ (I), reacts with PPh₃ with substitution of CO and formation of trans-tetracarbonyl(diethylaminocarbyne)triphenylphosphanechromium tetra-fluoroborate, trans-[PPh₃(CO)₄CrCNEt₂]BF₄ (III). Substitution of CO by PPh₃ in neutral trans-tetracarbonyl(halo)(diethylaminocarbyne)chromium complexes, trans-X(CO)₄CrCNEt₂ (IVa: X = Br, IVb: X = I), leads in a reversible reaction to the corresponding tricarbonyl complexes, mer-X(PPh₃)(CO)₃₋ CrNEt₂ (V), PPh₃ occupying the cis-position to the carbyne ligand. With PPh₃ in large excess both reactions follow a first-order rate law. This as well as the activation parameters (ΔH≠ = 104–113 kJ mol⁻¹, ΔS≠ = 64–71 J mol⁻¹ K⁻¹) indicate a dissociative mechanism.     

Molecular determinants for drug-receptors : Part 11. The preferred conformation of N-(p-anisoyl)pyrrolidin-2-one (“Aniracetam”) in the solid and solution states as indicated by X-ray crystal structure analysis, dipole moment and theoretical calculations

N-(p-anisoyl)pyrrolidin-2-one in the crystalline state exhibites a cis—rans conrotatory conformation with N---CO and CO---C_ar rotational angles of 33.5° and 38.5° respectively, and the p-methoxy group situated cis to the central carbonyl bond, as shown by X-ray structure analysis. As suggested by dipole moment analysis and MMP2 molecular mechanics calculations, in solution similar conrotatory models hold for both c- and t-subconformers having the p-methoxy group cis or trans to the central carbonyl bond. INDO calculations were also carried out, indicating that both subconformers are equally stable.     

Studies in the pinacol rearrangement—V The rearrangements of cis- and trans-1,2-diphenyl-1,2-ditolylethylene oxides

The intermediate formation of the two epoxides was observed in the perchloric acid-catalysed rearrangement of meso-2,2′-dimethylbenzpinacol (P_meso) to 2-methylbenzoyl tolyl diphenyl methane (K) Two kinds of epoxides were separated with preparative TLC and the configuration (cis and trans) of these epoxides was inferred in the light of UV, NMR and IR spectra, dipole moment and kinetic data. The rearrangement rates of these epoxides were measured in HClO₄-anhydrous acetic acid. Linear correlations of logarithm of the rate constants (log k) with the Hammett acidity function of the medium (H₀) were obtained, which supports the A-1 mechanism, together with the large positive values of the entropy of activation. It is shown that the perchloric acid-catalysed rearrangement of meso-2,2′-dimethylbenzpinacol (P_meso) occurs via such many kinetically distinguishable routes as the following where C and T are cis- and trans-epoxide respectively. The mechanisms of the rearrangements were discussed from the data of kinetics.     

Binuclear methyplatinum and phenylplatinum complexes with bis(dimethylphosphino)methane ligands

Reaction of cis-[Ptph₂(SMe₂)₂] with Me₂PCH₂PMe₂ (dmpm) gave cis-[PtPh₂(dmpm-P)₂] (1) or cis,cis-[Pt₂Ph₄(μ-dmpm)₂] (2) and reaction of 1 with [Pt₂Me₄(μ-SMe₂)₂] gave cis,cis-[Ph₂Pt(μ-dmpm)₂PtMe₂] (3). Reaction of 1 with trans-[PtClR(SMe₂)₂] gave cis,trans-[Ph₂Pt(μ-dmpm)₂PtClR], R = Me (5) or Ph (6), and in polar solvents, these isomerized to give [Ph₂Pt(μ-dmpm)₂PtR]⁺Cl⁻. When R = Me, further isomerization via the phenyl group transfer gave [PhMePt(μ-dmpm)₂PtPh]⁺Cl⁻. Oxidative addition of methyl iodide occurred reversibly at the cis-[PtMe₂P₂ unit of 3 to give cis,fac-[Ph₂Pt(μ-dmpm)₂PtIMe₃] but complex 2 failed to react with MeI. A comparison with similar known complexes of Ph₂PCH₂PPh₂ (dppm) is made and differences are attributed primarily to the lower steric hindrance of dmpm.     

Vibrational spectra and density functional study of propylgermane

Raman and infrared spectra of propylgermane, CH₃CH₂CH₂GeH₃, and its Ge-deuterated analog, CH₃CH₂CH₂GeD₃, were investigated in their gaseous, liquid and solid states. The normal coordinate treatment was carried out by density functional theory (DFT) calculation, using B3LYP/6-31G^* and 6-311++G^** basis sets, and the corresponding fundamental vibrations were assigned. The trans (T) and gauche (G) forms around the central C–C bond coexisted in the gaseous and liquid states and only the T form existed in the solid state. From the temperature dependent measurements of the Raman spectra in the liquid state, the enthalpy difference was found to be ΔH(T−G)=−0.36±0.02 kcalmol⁻¹ with the T form being more stable. The energy differences between the isomers obtained by DFT calculations were ΔE(T−G)=−0.46 kcalmol⁻¹ and ΔE(T−G)=−0.87 kcalmol⁻¹ by the 6-31G^* basis set and 6-311++G^** basis set, respectively.     

Syntheses, crystal structures and electronic properties of a series of copper(II) complexes with 3,5-halogen-substituted Schiff base ligands and their solutions

We have systematically investigated the structural features, electronic properties, thermally-induced structural phase transitions and absorption spectra depending on the solvent for ten Cu(II) complexes with 3,5-halogen-substituted Schiff base ligands. Structural characterization of two new complexes, bis(N-R-1-phenylethyl- and N-R,S-2-butyl-5-bromosalicydenaminato-κ²N,O)copper(II), reveals that they afford a compressed tetrahedral trans-[CuN₂O₂] coordination geometry with trans-N–Cu–N = 159.4(2)° and trans-O–Cu–O = 151.7(3)° for the 1-phenylethyl complex and trans-N–Cu–N = 157.9(3)° and trans-O–Cu–O = 151.0(3)° for the 2-butyl one. All the complexes exhibit a structural phase transition by heating in the solid state regardless of their structures at room temperature. The absorption spectra of a series of ten complexes exhibit a slight shift of the d–d band at 16 000–20 000 cm⁻¹ and remarkable shift of the π–π* band at 24 000–28 000 cm⁻¹, which suggests that the dipole moment of the solvents presumably affects the conformation of the π-conjugated moieties of the ligands rather than the coordination environment. We have also attempted ‘photochromic solute-induced solvatochromism’ by a system of bis(N-R-1-phenylethyl-3,5-dichlorosalicydenaminato-κ²N,O)copper(II) and photochromic 4-hydroxyazobenzene in chloroform solution. We successfully observed a change of the d–d and π–π* bands of the complex in the absorption spectra caused by cis–trans photoisomerization of 4-hydroxyazobenzene.     

Studies in stereochemistry—I Stereospecific routes to trans- anti- and cis- syn-Δ-dodecahydrophenanthrenes

Reduction of trans-1-oxo-7-methoxy-1,2,3,4,9,10,11,12-octahydrophenanthrene (XI) by lithium tri-t-butoxyaluminohydride gave trans-1β-hydroxy-7-methoxy-1,2,3,4,9,10,11,12-octahydrophenanthrene (XII) which on lithium—liquid ammonia reduction gave trans-anti-1β-hydroxy-7-oxo-Δ⁸⁽¹⁴⁾-dodecahydrophenanthrene (XIII). Reduction of cis-1-oxo-7-methoxy-1,2,3,4,9,10,11,12-octahydrophenanthrene (XV) by sodium borohydride gave cis-1-hydroxy-7-methoxy-1,2,3,4,9,10,11,12-octahydrophenanthrene (XVI) which on lithium—liquid ammonia reduction gave cis-syn-1-hydroxy-7-oxo-Δ⁸⁽¹⁴⁾-dodecahydrophenanthrene (XVII).     

The stereochemistry of Ei reaction of N-p-toluenesulphonyl sulphilimines

The stereochemistry of the pyrolysis of S-alkyl-N-p-tosylsulphilimines was investigated with both the erythro and threo isomers of S-phenyl-S-1-phenyl-2, 2-phenylmethoxy-1-ethyl-N-benzene-sulphonylsulphilimine I_E and I_T. Pyrolyses revealed that I_E gives only trans-1-methoxystilbene V_T in nearly quantitative yield while a mixture of 5·5% trans-V_T and 94·5% cis-V_C are formed from I_T. The kinetics of the reactions of both I_E and I_T obey a good 1st order rate equation. Pyrolysis is considered to proceed via a concerted cis elimination involving a five membered cyclic transition state.     

Coordination geometry of chromium(VI) species. The first example of cis-bridging chromate ions in helically structured catena(μ-CrO4-O,O′)[Ni(HIm)3H2O]

Nickel(II) chromate complex with imidazole (HIm) was isolated from the [Ni²⁺–HIm–CrO₄²⁻] system in various experimental conditions, i.e. reagent molar ratios and nickel(II) salts. The catena(μ-CrO₄-O,O′)[Ni(HIm)₃H₂O] (1) crystallizes in monoclinic crystal system—space group P2₁/n with cell parameters: a=11.784(2), b=8.899(2), c=13.934(3) (Å), β=95.19(3) (°). The unit cell contains two independent helixes, left- and right-handed, stabilized by intrahelical and interhelical hydrogen bonds (HB) and π–π interactions. The cis coordination of the CrO₄²⁻ anions and the HB systems appeared to be the main determinants of the helical architecture. To the best of our knowledge the cis-chromate coordination was observed for the first time. The cis coordination causes the distortion of the nickel octahedron, which was analysed by 4 K single crystal electronic spectra with D_4h symmetry approximation (gaussian resolution and crystal field parameters). This symmetry was also confirmed with the polarised electronic spectra. The magnetic properties of the complex suggest the occurrence of weak intrachain antiferromagnetic interactions between the magnetic Ni^II center. The computational DFT studies of complex 1 assuming three possible isomers mer[(HIm)₃]–cis[(CrO₄²⁻)₂], mer–trans and fac–cis suggested that the main contribution to the stability of 1 might have interhelical and intrahelical hydrogen bonds.     

Syntheses, X-ray structures, and reactions of ruthenium carbonyl complexes containing 1,1-dithiolates

Treatment of [Ru₂(CO)₄(MeCN)₆][BF₄]₂ or [Ru₂(CO)₄(μ-O₂CMe)₂(MeCN)₂] with uni-negative 1,1-dithiolate anions via potassium dimethyldithiocarbamate, sodium diethyldithiocarbamate, potassium tert-butylthioxanthate, and ammonium O,O′-diethylthiophosphate gives both monomeric and dimeric products of cis-[Ru(CO)₂(η²-(SS))₂] ((SS)⁻=Me₂NCS₂⁻ (1), Et₂NCS₂⁻ (2), ^tBuSCS₂⁻ (3), (EtO)₂PS₂⁻ (4)) and [Ru(CO)(η²-(Me₂NCS₂))(μ,η²-Me₂NCS₂)]₂ (5). The lightly stabilized MeCN ligands of [Ru₂(CO)₄(MeCN)₆][BF₄]₂ are replaced more readily than the bound acetate ligands of [Ru₂(CO)₄(μ-O₂CMe)₂(MeCN)₂] by thiolates to produce cis-[Ru(CO)₂(η²-(SS))₂] with less selectivity. Structures 1 and 5 were determined by X-ray crystallography. Although the two chelating dithiolates are cis to each other in 1, the dithiolates are trans to each other in each of the {Ru(CO)(η²-Me₂NCS₂)₂} fragment of 5. The dimeric product 5 can be prepared alternatively from the decarbonylation reaction of 1 with a suitable amount of Me₃NO in MeCN. However, the dimer [Ru(CO)(η²-Et₂NCS₂)(μ,η²-Et₂NCS₂)]₂ (6), prepared from the reaction of 2 with Me₃NO, has a structure different from 5. The spectral data of 6 probably indicate that the two chelating dithiolates are cis to each other in one {Ru(CO)(η²-Et₂NCS₂)₂}fragment but trans in the other. Both 5 and 6 react readily at ambient temperature with benzyl isocyanide to yield cis-[Ru(CO)(CNCH₂Ph)(η²-(SS))₂] ((SS)=Me₂NCS₂⁻ (7) and Et₂NCS₂⁻ (8)). A dimerization pathway for cis-[Ru(CO)₂(η²-(SS))₂] via decabonylation and isomerization is proposed.     

The active catalytic species and its isomerisation in the catalytic carbonylation of methanol — a density functional study

The Monsanto acetic acid process is one of the most effective ways to produce acetic acid industrially. This process has been studied experimentally but theoretical investigations are so far sparse. In the current work the active catalytic species [Rh(CO)₂I₂]⁻ (1) and its isomerisation has been studied theoretically using the hybrid B3LYP exchange and correlation functional. Similar calculations has been performed for the iridium complex [Ir(CO)₂I₂]⁻ (2) that also is catalytically active in the methanol carbonylation. Experimental work has confirmed the existence of the cis forms of the active catalytic species, but they do not rule out the possibility of the trans isomers. Our gas phase results show that cis-1 has 4.95 kcal/mol lower free energy than trans-1, and cis-2 has 10.39 kcal/mol lower free energy than trans-2. In the case of rhodium, trans-1 can take part to the catalytic cycle but in case of iridium this is not very likely. We have also investigated the possible mechanisms of the cis to trans conversions. The ligand association mechanism gave free energy barrier of 13.7 kcal/mol for the rhodium complex and 19.8 kcal/mol for iridium. Thus the conversion for the rhodium complex is feasible whereas for iridium it is unlikely.     

Structure and conformational properties of carbonylbisimidosulfuryl fluoride, O=C(N=S(O)F2)2

The molecular structure and conformational properties of O=C(N=S(O)F₂)₂ (carbonylbisimidosulfuryl fluoride) were determined by gas electron diffraction (GED) and quantumchemical calculations (HF/3-21G* and B3LYP/6-31G*). The analysis of the GED intensities resulted in a mixture of 76(12)% syn–syn and 24(12)% syn–anti conformer (ΔH⁰=H⁰(syn–anti)−H⁰(syn–syn)=1.11(32) kcal mol⁻¹) which is in agreement with the interpretation of the IR spectra (68(5)% syn–syn and 32(5)% syn–anti, ΔH⁰=0.87(11) kcal mol⁻¹). syn and anti describe the orientation of the S=N bonds relative to the C=O bond. In both conformers the S=O bonds of the two N=S(O)F₂ groups are trans to the C–N bonds. According to the theoretical calculations, structures with cis orientation of an S=O bond with respect to a C–N bond do not correspond to minima on the energy hyperface. The HF/3-21G* approximation predicts preference of the syn–anti structure (ΔE=−0.11 kcal mol⁻¹) and the B3LYP/6-31G* method results in an energy difference (ΔE=1.85 kcal mol⁻¹) which is slightly larger than the experimental values. The following geometric parameters for the O=C(N=S)₂ skeleton were derived (r_a values with 3σ uncertainties): C=O 1.193 (9) Å, C–N 1.365 (9) Å, S=N 1.466 (5) Å, O=C–N 125.1 (6)° and C–N=S 125.3 (10)°. The geometric parameters are reproduced satisfactorily by the HF/3-21G* approximation, except for the C–N=S angle which is too large by ca. 6°. The B3LYP method predicts all bonds to be too long by 0.02–0.05 Å and the C–N=S angle to be too small by ca. 4°.     

Base induced C-5 epimerisation of 4-methyl-5-phenyl oxazolidinones: Chiral auxiliaries derived from norephedrine and norpseudoephedrine.

Treatment of cis- and trans-4-methyl-5-phenyl oxazolidinones 2 and 3 with excess butyllithium at 0°C results in C-5 epimerisation, via a common intermediate N,C-5-dianion, generating after protonation a 1:4 mixture of 2:3.     

X-ray study of the hetero ring flexibility in trans-5,6- trimethylene- and tetramethylene-5,6-dihydro 2-phenyl-[4H]-1,3-thiazines

The structures to two 1,3-thiazine derivatives differing only in the number of CH₂ groups in their trans fused hydrocarbon ring (_n = 3 for I and n = 4 for II) have been established by X-ray crystallography from diffractometer data. Crystals of I (trans-5,6- trimethylene-5,6-dihydro-2-phenyl-[4H] - 1,3-thiazine) are triclinic, space group P with a = 7.661(1), b = 8.282(1), c = 9.566(2) Å, = 91.75(1), β = 100.72(1), γ = 105.45(1)° Z = 2, D_c = 1.260 g cm^-3. Crystals of II (trans-5,6-tetramethylene-5,6-dihydro-2-phenyl [4H]-1,3-thiazine) are monoclinic, space group P2₁/c with a = 7.914(2), b = 19.362(13), c = 8.440(1) Å, β = 109.16(2)°C Z = 4, D_c = 1.258 g cm^-3. The structures determined by Patterson (I) and direct (II) methods were refined to R = 0.050 for 1330 reflections of I and R = 0.082 for 1012 reflections of II. The proper treatment of the positional disorder of the carbon atoms (C(5) and C(6)) forming the trans ring junction in I discovered two discrete conformations with a ratio of 1:2. The opposite chirality of atoms C(51) and C(52), and C(61) and C(62), indicates a simultaneous configurational disorder with a pattern of total disorder: A A . The puckering parameters of the hetero rings in the same enantiomers of molecules IA, IB and II indicate a connection between the conformers: ⁵E(II)→⁵H₆(IB)→E₆IA) via pseudorotation. Their relationship is discussed and compared with the conformational freedom of the analogous 1,3-oxazine derivatives.     

Peptide models XXIX. cis–trans Isomerism of peptide bonds: ab initio study on small peptide model compound; the 3D-Ramachandran map of formylglycinamide

Thermodynamic separations for cis and trans-amides and formylglycinamide range from 0.00 to 4.77 kcal/mol as computed at various levels of theory. The barriers for trans→cis-isomerization, for the same set of compounds, computed at various levels of theory, were found between 15.69 and 22.67 kcal/mol. The cis- and trans-Ramachandran maps of formylglycinamide are compared and the topology of the ab initio 3D-Ramachandran map is presented for the first time.     

Use of ab initio computational results and experimental frequencies to construct the internal rotational potential function for acrolein

Ab initio optimizations of the complete acrolein molecular geometry accomplished using analytical gradient methods at the 6-31G* SCF level at ten points during rotation from the planar trans- to the planar cis-form (rotation about the single C---C bond) are used to calculate the values of the Pitzer function F(φ), the coefficients of its Fourier expansion, and the coefficients in the potential energy expansion. The theoretical potential expansion coefficients are then adjusted using the experimental torsional frequencies and their overtones for the trans- and cis-forms of CH₂=CH---CH=O and CH₂=CH---CD=O. For the cis-conformer two different sets of experimental frequencies are employed. The dependence of the slope of the acrolein potential energy curve on the experimental frequency set used for the cis-rotamer is discussed.     

Studies on lactams—V 3-azido-2-azetidinones

A convenient synthesis of -amino-β-lactams has been devised with the aim of preparing derivatives and analogs of penicillin and cephalosporin C. It has been found that -azido-β-lactams can be obtained from the reaction of -azido acid chlorides with imines in presence of triethylamine. The azido group undergoes facile catalytic reduction to afford -amino-β-lactams. The sequence of addition of the reactants influences the stereochemistry of the azido-β-lactam formed. The slow addition of azidoacetyl chloride to a solution of benzaliniline and triethylamine in methylene chloride favors the cis product, while the trans stereochemistry is favored when triethylamine is added to a mixture of the Schiff base and azidoacetyl chloride. Prolonged heating in presence of triethylamine did not result in the interconversion of cis- and trans- 1-phenyl-3-azido-4-(p-nitrophenyl)-azetidin-2-one.

1-Cholestanyl-3,3-dimethylazetidine-2-one has been prepared as an analog of the β-lactam-substituted steroid alkaloids reported recently.     

Enantioselective catalytic epoxidation of nonfunctionalized prochiral olefins by dissymmetric chiral Schiff base complexes of Mn(III) and Ru(III) metal ions II

A series of new dissymmetric chiral Schiff base complexes has been obtained by a systematic condensation of (1S,2S)(+)-diaminocyclohexane and 3-acetyl-4-hydroxy-6-methyl-2-pyrone with salicylaldehyde, 5-chloro-, 5-methoxy-and 5-nitrosalicylaldehyde and by subsequent metallation with manganese and ruthenium. The characterization of the complexes 1–8 was accomplished by physico chemical studies viz. microanalysis, IR-, UV/VIS-, and CD spectral studies, optical rotation, molar conductance measurements and cyclic voltammetry. Enantioselective epoxidation of non functionalised olefins, viz. cis-stilbene, trans-3-nonene and trans-4-octene with iodosyl benzene as oxidant was demonstrated in the presence of catalytic amounts of chiral Mn(III) and Ru(III) dissymmetric Schiff base complexes. Good optical yields of epoxides were obtained for the catalyst 4 with the substrates trans-3-nonene and cis-stilbene.