海洋环肽Phakellistatin 13的全合成研究

Phakellistatin 13是从海绵中分离得到的高活性的抗肿瘤环七肽化合物, 是优良的抗肿瘤先导化合物. 我们结合逐步接肽法和片段缩合法, 首次采用液相法完成Phakellistatin 13的全合成, 并提出与以往报道不同的多肽环合策略. 目标化合物经质谱与核磁共振光谱结构确证与天然产物一致, 为进一步开展Phakellistatin 13及其类似物的抗肿瘤活性研究打下了扎实的基础.     

Total Synthesis of Phakellistatin 13 by Solution Method

Since George R. Pettit’s group isolated cycloheptapeptide phakellistatin 1 from sponge1, over ten similar cyclic peptides have been obtained2-5. Phakellistatin 134 (Figure 1) is a cycloheptapeptide isolated from the brown snubby sponge from the South Chi…     

Conformational communication between the Ar-CO and Ar-N axes in 2,2'-disubstituted benzanilides and their derivatives

Benzanilides containing two or more potentially stereogenic amide axes exist in solution as mixtures of conformers which are detectable by NMR. For simple tertiary benzanilides carrying an ortho substituent on each ring, conformational control can be high (up to about 10:1) providing the substituents are large, indicating that the two axes are in conformational communication with one another. For more complex diamides, conformational communication breaks down, and mixtures of conformers are evident by NMR.     

Structural and NMR spectroscopic investigations of chair and twist conformers of the P2Se8(2-) anion

Four new salts of the P2Se8(2-) anion have been prepared, starting from easily available reagents using different reaction strategies including reaction of the elements, oxidation of P4Se3 with alkalimetal diselenides and elemental selenium, and the use of an ionic liquid as a reaction medium. Multinuclear NMR investigations show the presence of both chair-P2Se8(2-) and twist-P2Se8(2-) in solution, with twist-P2Se8(2-) being the predominant conformer. The interconversion between the two conformers is slow on the NMR time scale. Structural investigations of the new salts by single-crystal X-ray diffraction show that chair-P2Se8(2-) is the conformer mostly found in the solid state. A first structural characterization of twist-P2Se8(2-) is reported. The bonding situation in the P2Se8(2-) anion as well as the relative stability of the chair, twist, and boat conformers was elucidated by quantum chemical calculations.     

Calculated chemical shifts as a fine tool of conformational analysis: an unambiguous solution for haouamine alkaloids

In this study, for the first time, conformational analysis by calculated chemical shifts (CCS) deals with a real conformational problem of a large biomolecule. This new methodology is applied to haouamine A, which is much more stereodynamically puzzled than the small models used to validate previous CCS-based conformational studies. Thorough NMR experiments by Zubia et al. on this exotic polyfunctional paracyclophane alkaloid could not determine which experimentally detected interconversion of this compound occurs in solution, rotation or N-inversion. The present study uses CCS to locate the lowest energy conformers and thus to identify the observed stereodynamic process. Molecular mechanics calculations were used to explore the conformational space of this polycyclic system, and then the geometry of located conformers was refined by ab initio calculations at the B3LYP/6-31G(d,p) level; an implicit model for acetone solution was employed. Calculated relative energies are considered too inaccurate to identify the lowest energy (i.e., those detectable by NMR) conformers. Instead, rational regression analysis of CCS for carbon atoms using B3LYP/6-31+G(d)//GIAO-based calculations singled out two conformers from a large set of alternative low energy structures, although solvation shell was not explicitly included in the model. For only these two conformers, the differences in CCS (Delta delta) for selected pairs of carbons are very similar to the experimental Delta delta values. Thus, the conformers monitored by NMR have now been identified; their piperideine ring is of (1)Sf and Sf 1 (sofa-shaped) geometry. This azacycle appears to be flexible despite the presence of the ethylenebiphenylene bridge in haouamines. Interconversion between the conformers probably occurs via a concerted process of inversion of the piperideine ring, N-inversion coupled with rotation around the C-N bond, and rotation around two C-C bonds in the ethylenebiphenylene bridge. This CCS method of conformational analysis is sufficiently simple and reliable that if chemical shifts for a pair of the same carbons are sufficiently different in routine (13)C NMR spectra of stereoisomers (ca. > or = 2 ppm), the "resolving power" of the CCS technique may rival that of NMR techniques.     

Helical chirality in hexamethylene triperoxide diamine

The primary explosive hexamethylenetriperoxide diamine has previously been found to exist in the solid state as a racemic mixture of helically chiral, threefold symmetric enantiomers; another enantiomeric pair of low-energy conformers has been predicted, but has never been observed. We show by solution 2D NMR at 14 T, in achiral solution and by addition of chiral shift reagents, that all four optically isomeric conformers coexist at slow equilibrium on the NMR timescale at room temperature, and can be observed. Calculations of the 1H and 13C NMR chemical shifts using gauge-including atomic orbital methods are in excellent agreement with experiment; thermochemical calculation of the free energies in solution are in somewhat worse agreement, but correctly predict the relative stability of the conformers. Analysis of the effects of chiral shift reagents on the NMR spectra suggests that discrimination between chiral isomers is primarily around the molecular equator, around which the enantiomeric gauche O--O linkages are arrayed.     

Competitive formation of helical cycloocta- and cyclododecapyrroles

In connection with a study aimed at the evaluation of electronic effects in spiro-dicorrole (1a) and its binuclear Ni(II) complex (1b) we became interested in gem-dimethyl-substituted cyclotetrapyrrole (2a) and the corresponding Ni(II) complex (2b). Attempts to prepare 2a as the 12,13,16,17-tetraethyl-2,3,7, 8-tetramethyl derivative (5) by an acid-catalyzed (1 + 1) condensation of dimethyldipyrrylmethane 3 and diformylbipyrrole 4 resulted in the formation of the (2 + 2) and (3 + 3) condensation products, i.e., the cyclooctapyrrole 6 and the cyclododecapyrrole 7, respectively, rather than in that of the desired gem-dimethyl cyclotetrapyrrole. The cyclododecapyrrole 7, isolated as the major product, is among the largest cyclopolypyrroles known to date. These two new macrocycles have been structurally characterized by variable temperature 1D and 2D NMR experiments, as well as by single-crystal X-ray diffraction analysis. In solution both the cyclooctapyrrole 6 and cyclododecapyrrole 7 exhibit dynamic behavior. At 337 K 6 adopts a D(2)-symmetric conformation, whereas at 196 K two equivalent C(2) conformers that interconvert through the D(2)-symmetric intermediate are observed. The energy barrier for the interconversion process between these two degenerate conformers is found to be 10.6 kcal mol(-)(1). The solution dynamics of 7 could be described in an analogous manner, with the time-averaged conformation at 378 K displaying D(3)(h)() symmetry. X-ray analyses showed that for both macrocycles, 6 and 7, the solid state structures were nearly identical to the low-temperature solution conformers.     

Sibiralactone: a new monoterpene from Sibiraea angustata

Sibiralactone (1), a new monoterpene derivative, was isolated from the leaves of Sibiraea angustata. The structure was determined by the analysis of its NMR data and the absolute configuration was established by TDDFT ECD calculation of the solution conformers.     

Absolute structure of shoreaketone: a rotational isomeric resveratrol tetramer in Dipterocarpaceaeous plants

A rotational isomeric shoreaketone (1), identified as a skeletal member of resveratrol tetramers, was isolated from three species of Dipterocarpaceaeous plants: Shorea uliginosa, Shorea hemsleyana, and Vateria indica. The structure was elucidated by spectroscopic analysis including NMR experiments and their absolute configurations determined based on circular dichroism data. Shoreaketone has 10 asymmetric carbons and a framework of fused heptacyclic ring system including a spiro ring and an α,β-unsaturated carbonyl group that has not been reported in any other natural product. NMR experiments using shoreaketone indicate the presence of two conformers due to restricted rotation of a C–C bond in solution. The complex stereochemistry is due to its skeleton, 10 asymmetric carbons, and a chiral axis. The conformations of rotational isomeric stilbenoid were studied by variable-temperature NMR, ROESY, a skeletal conversion. The coexistence of two conformers for shoreaketone (1) was confirmed to be 1a and 1b, in which the diaryl-dihydrobenzofuran moiety (unit 1B) is extended below or above the plane of the cyclopentane ring (unit 1A), respectively.     

2-alpha-hydroxyalkyl- and 2,7-di(alpha-hydroxyalkyl)-1,8-bis(dimethylamino)naphthalenes: stabilization of nonconventional in/out conformers of "proton sponges" via N...H-O intramolecular hydrogen bonding. A remarkable kind of tandem nitrogen inversion

A regular set of 2-(alpha-hydroxymethyl)- and 2,7-di(alpha-hydroxymethyl)-1,8-bis(dimethylamino)naphthalenes has been prepared. Their X-ray, NMR, and IR studies have demonstrated that in tertiary mono-alcohols the orientation of free nitrogen electron pairs in crystals and solution corresponds to nonconventional in/out conformers stabilized by O-H...N intramolecular hydrogen bonding. For tertiary 2,7-dialcohols, the superimposed equilibrating in/out-out/in nitrogen invertomers are observed in solution. Unlike this, primary and secondary mono- and dialcohols commonly exist in the in/in form, which is typical for the parent proton sponge and the majority of its derivatives.     

Conformational analysis of 2-substituted alkylphosphoryl compounds. Part 3: (2-hydroxypentyl)diphenylphosphine oxide and its acetate

Conformational analysis of (2-hydroxypentyl)diphenylphosphine oxide 1 and its acetate 2 is described. The NMR, X-ray, IR, and molecular mechanics (MM) modeling studies indicated that phosphine oxide 1 favors different conformers in the solid state and in solution and that conformational preferences are strongly influenced by the nature of the hydrogen bonding. Vicinal proton-proton coupling constants and MM modeling solvation studies indicated that there are deviations from perfectly staggered conformers. Conformational analysis based on the twisted staggered conformers for phosphine oxide 1 made marked changes to the estimated conformational populations. For the acetate 2 , NMR spectroscopy established that the position of the conformational equilibrium is strongly dependent on the polarity of the medium. © 1996 John Wiley & Sons, Inc.     

1H NMR spectra and conformational analysis of some 1,4-dithiepan-6-ones

¹H NMR Parameters are reported for five 1,4-dithiepan-6-ones. 1,4-Dithiepan-6-one 1-oxide exists in solution as an equilibrium involving two different twist-chair conformations, which contrasts with its conformational behaviour in the solid state. Twist-chair conformers are also adopted by other members of the series, the favoured form varying with ring substitution. The S?O bond in 1,4-dithiepan-6-one 1-oxide and in its 5,5-dimethyl analogue exhibit a preference for the pseudoaxial site.     

Monohalocyclohexanes in liquid crystalline solution: the molecular behaviour of chloro- and iodo-cyclohexane

Dynamic ²H NMR spectroscopy is used to study selectively and perdeuteriated samples of chloro- and iodo-cyclohexane dissolved in a liquid crystalline solution. The equatorial and axial conformers are found to exist in a dynamic equilibrium with relative amounts of about p_e = 0.7 and p_a = 0.3, respectively, as taken from the ²H NMR lineshapes and 2D exchange spectra. The quantitative analysis of variable temperature ²H NMR spectra provides the kinetic parameters of the underlying ring inversion process. The activation enthalpies of this internal process are given by ΔH = 48.1 ± 1.0 and 40.6 ± 2.3 kJ mol^-1 for chloro- and iodocyclohexane, respectively. These values resemble those reported from earlier studies of isotropic solutions. The molecular order parameters, as well as the orientation of the main ordering axis, for the axial and equatorial conformers are determined as functions of temperature. These molecular quantities exhibit a strong dependence on the actual conformational state and size of the substituent, while polar effects of the substituents seem to play no important role.     

Two xanthones and two rotameric (3⟶8) biflavonoids from the Cameroonian medicinal plant Allanblackia floribunda Oliv. (Guttiferae)

Two xanthones, 2-(3-hydroxy-3,3-dimethyldihydroallyl)-dihydro-6-deoxyisojacareubin (1) and dihydro-6-deoxyjacareubin (2), and two 3 ⟶ 8 rotameric biflavonoids, (2R,3S)-volkensiflavone-7-O-β-acetylglucopyranoside (3) and (2S,3S)-morelloflavone-7-O-β-acetylglucopyranoside (4), together with fifteen known compounds, were isolated from a dichloromethane/methanol (1:1, v/v) extract of the bark of the plant Allanblackia floribunda. The structures of the new compounds were elucidated by NMR spectroscopy and mass spectroscopic techniques and those of the known ones were deduced by comparison with data reported in the literature. The isolated biflavonoids were obtained as mixtures of conformers exhibiting duplicate NMR signals in solution at 25 °C and their respective absolute configurations were assigned using circular dichroism spectroscopy. Selected isolated compounds were assessed for their antibacterial and antioxidant properties.     

The origin of the conformational preference of N,N'-diaryl-N,N'-dimethyl ureas

Poly aromatic ureas and poly aromatic amides are important classes of foldamers-oligomers with well defined conformations. We have explored the origins of the conformational preference of some N,N'-diaryl-N,N'-dimethyl ureas by a combination of NMR spectroscopy and electronic structure calculations using both a recently developed density functional (M06-2X) and a DFT approach (DFT-D) having empirical corrections for dispersive interactions. We have validated the DFT-D approach for structures of this type using high level wavefunction calculations, (CCSD(T)), of the unsubstituted N,N'-diphenyl-N,N'-dimethyl urea. For the N,N'-diaryl-N,N'-dimethyl ureas we have identified a number of 'endo' conformers (i.e. having an E,E geometrical conformation about the two urea C-N bonds), both π- and tert-butyl-stacked, as well as 'exo' structures (having a Z geometrical conformation about at least one of the C-N bonds), and have computed the relative energies of these conformers as well as the barriers for their interconversion. We find that the relative energies of the 'endo' structures closely follow the relative values of the dispersive interactions. The calculations have allowed us to associate different conformers with the various peaks in the NMR spectra, which point to relatively small differences in energy between the conformers. Somewhat larger energy differences are predicted by the two computational approaches, with the M06-2X functional performing the better of the two. It is suggested that the continuum model employed may not be sufficiently accurate to reflect the solvation of the various conformers.     

New bibenzyl cannabinoid from the New Zealand liverwort Radula marginata

The ether extract of the New Zealand liverwort Radula marginata afforded a new cannabinoid type bibenzyl compound named perrottetinenic acid, and two new bibenzyls, together with a known cannabinoid, perrottetinene. Their structures were established by two dimensional (2D) NMR spectral data. The structure of perrottetinenic acid was a similar to that of Delta(1)-tetrahydrocannabinol, a known hallucinogen. Cannabinoid type bibenzyls have been isolated from liverwort Radula perrottetii, though have not previously been reported from the liverwort R. marginata.     

One-pot synthesis of donor-acceptor [2]rotaxanes based on cryptand-paraquat recognition motif

Two novel cryptand-based [2]rotaxanes were synthesized by a facile one-pot reaction from three neutral precursors: easily accessible cryptand host 1 and commercially available 4,4'-bipyridine and 3,5-di-tert-butylbenzyl bromide. Their structures were confirmed by (1)H NMR, 2D NMR, HRMS and X-ray analysis. Moreover, two [2]pseudorotaxanes based on the same cryptand hosts and dibenzyl viologen guest 3 were also demonstrated both in solution and in the solid state, which are different from previously reported [3]pseudorotaxane-like complexes formed by dimethyl viologen guest 2 and the cryptands.     

Conformational dynamics of tetraisopropylmethane and of tetracyclopropylmethane

Tetraisopropylmethane (1) exists in solution as a mixture of two types of conformers (D2d and S4 time-averaged symmetry) in the ratio 93:7 at -110 degrees C, interconverting with a barrier of 9.7 kcal mol-1. Molecular mechanics calculations and the multiplicity of NMR signals at low temperature allow the assignment of these conformations. The only conformation populated in tetracyclopropylmethane (2) is the same type as the minor conformation (S4 time-averaged symmetry) populated in 1. 13C NMR spectra at about -180 degrees C show that degenerate versions of this conformation interconvert with a barrier of 4.5 kcal mol-1. Molecular mechanics calculations that characterize the six possible conformational types for these molecules, and the most important interconversion pathways, are reported. Calculated and experimental barriers match satisfactorily well.     

Structures and conformational dynamics of gold(I) halide complexes of resorcinarene tetraphosphinite ligands

Gold(I) halide derivatives of several tetrakis(diphenylphosphinite) tetraester resorcinarene compounds have been prepared. The complexes are shown to exist in boat conformations, and two different boat conformations were characterized by X-ray structure determinations; the structural characterization of both boat conformations of the same parent resorcinarene is unprecedented. Intramolecular Au.Au interactions were observed in the solid state for both boat conformers and could cause twisting of the resorcinarene skeleton. Several of the complexes exist in solution as an equilibrium mixture of the two different boat conformers, and the equilibrium and dynamics of exchange were studied by variable-temperature NMR.     

Dependence of the L-alanyl-L-alanine conformation on molecular charge determined from ab initio computations and NMR spectra

The l-alanyl-l-alanine (AA) molecule behaves differently in acidic, neutral, and basic environments. Because of its molecular flexibility and strong interaction with the aqueous environment, its behavior has to be deduced from the NMR spectra indirectly, using statistical methods and comparison with ab initio predictions of geometric and spectral parameters. In this study, chemical shifts and indirect spin-spin coupling constants of the AA cation, anion, and zwitterion were measured and compared to values obtained by density functional computations for various conformers of the dipeptide. The accuracy and sensitivity of the quantum methods to the molecular charge was also tested on the (mono)-alanine molecule. Probable AA conformers could be identified at two-dimensional potential energy surfaces and verified by the comparison of the computed parameters with measured NMR data. The results indicate that, whereas the main-chain peptide conformations of the cationic (AA+) and zwitterionic (AAZW) forms are similar, the anion (AA-) adopts also another, approximately equally populated conformer in the aqueous solution. Additionally, the NH2 group can rotate in the two main chain conformations of the anionic form AA-. According to a vibrational quantum analysis of the two-dimensional energy surfaces, higher-energy conformers might exist for all three charged AA forms but cannot be detected directly by NMR spectroscopy because of their small populations and short lifetimes. In accord with previous studies, the NMR parameters, particularly the indirect nuclear spin-spin coupling constants, often provided an excellent probe of a local conformation. Generalization to peptides and proteins, however, has to take into account the environment, molecular charge, and flexibility of the peptide chain.