Hydrogen bonded aromatic hydrazide foldamers for the self-assembly of vesicles and gels

This paper describes an investigation of the structural and side-chain factors for the formation of vesicles and gels by hydrogen bonding-mediated aromatic hydrazide foldamers. Six foldamers and one straight analog that bear discrete side chains have been synthesized. SEM and AFM studies reveal that the molecules with the appended 2-(2-(dialkyl-amino)-2-oxoethylamino)-2-oxoethoxyl chains form vesicles, hydrogels or organogels, depending on the solvents. Both the inner amide units and the terminal N,N-dialkylamide units in the chains are revealed to play essential roles in controlling the self-assembly. The former facilitates it by forming the intermolecular hydrogen bonding, while the latter modulates it by providing solubility and balancing the hydrophobicity of the whole molecules in solvents of varying polarity.     

Hydrogen bonded phosphate structures

Abstract

Some phosphate esters form structures containing infinite chains of hydrogen bonded units, others form discrete dimeric units, and still others form columns or chains of dimeric units. We have formed unique hydrogen bonded phosphorus ester systems which incorporate catechol molecules of crystallization, [HOC₆H₄OP(Ph)O₂][PPh₄]· catechol, 1, and [HOC₆H₄OP(Ph)O₂] [C₅H₅NH]· catechol, 2. X-ray analysis shows a chain arrangement in 1 and dimeric phosphonate units in a chain structure for 2 By comparing our results with literature examples, a classification of hydrogen bonding in phosphates results which proves useful in interpreting orientational influences at enzyme active sites.     

Phenylboronic acid-functionalized TTFAQ: modular synthesis and electrochemical recognition for saccharides

A phenylboronic acid-functionalized π-extended tetrathiafulvalene (TTFAQ) derivative was prepared through an efficient Cu-catalyzed alkyne-azide [3+2] cycloaddition reaction (click reaction). This boronic acid-TTFAQ hybrid system shows different electrochemical redox behavior upon titration with various saccharides in DMSO/H₂O at pH 8.75, suggesting potential use in saccharide sensing and recognition.     

Noncovalently galactose imprinted polymer for the recognition of different saccharides

Molecularly imprinted polymers (MIPs) represent a new class of materials possessing high selectivity and affinity for the target molecule. The main goal of this study was to prepare a galactose imprinted polymer and its potential application for the recognition of different saccharides. The selectivity of galactose imprinted polymer for several saccharides; glucose, mannose, fructose, maltose, lactose, sucrose and raffinose was investigated. Macroporous polymer was prepared utilizing ethyleneglycoldimethacrylate as a crosslinking agent, in the presence of galactose as a template molecule with acrylamide as a functional monomer. After the synthesis of polymer, galactose was removed by methanol:acetic acid washing. The selectivity of galactose imprinted polymer for other saccharides was utilized by batch rebinding assay. The arrangement of functional groups within cavities versus shape selectivity is discussed. The results showed that, the orientation of the functional groups was the dominating factor for the selectivity of galactose imprinted polymer. The dissociation constants of polymer were determined by Scatchard analysis.     

Hydrogen bonding-mediated self-assembly of rigid and planar metallocyclophanes and their recognition for mono- and disaccharides

A hydrogen bonding approach has been developed to facilitate the self-assembly of a new series of rigid and planar metallocyclophanes. Two new anthranilamide derivatives 1 and 2, which are incorporated with two acetylene units, respectively, have been synthesized and characterized. X-ray analysis (for 1), 1D and 2D ¹H NMR and IR experiments reveal that, due to the formation of intramolecular three-centered hydrogen bonding, both compounds adopt rigid and planar conformations with the two acetylene units located at the same side of the anthranilamide skeleton. Two new metallocyclophanes 17 and 18 have been constructed in moderate yields from the reaction of 1 and 2 with trans-Pt(PEt₃)₂Cl₂, respectively, in dichloromethane in the presence of diethylamine and cupric chloride. Fluorescent and ¹H NMR investigations reveal that both 17 and 18 can efficiently complex mono- and disaccharide derivatives in chloroform, with a binding selectivity for disaccharides, which is driven by intermolecular hydrogen bonding.     

Non-covalently lactose imprinted polymers and recognition of saccharides in aqueous solutions

The aim of this work was to prepare lactose imprinted polymer and study of its selectivity for the recognition of different mono- and disaccharides. A series of molecularly imprinted polymers (MIPs) against lactose were synthesized and their binding properties were compared with a Blank non-imprinted polymer. Methacrylamide (MAAM) and ethylene glycol dimethacrylate were used as functional monomer and cross-linker, respectively. Dimethylsulfoxide was also applied as polymerization solvent. Different lactose:MAAM ratios were applied and optimized MIP was selected in a conventional batch adsorption study. The dissociation constant and maximum binding sites of polymer were determined using the Scatchard analysis. The selectivity of MIP for different mono- and disaccharides was also evaluated. The results indicated that the shape of cavity and orientation of functional monomers in binding sites and the spatial arrangement of hydroxyl groups in saccharide structure were responsible for the selectivity of lactose imprinted polymer.     

Flexible oligocholate foldamers as membrane transporters and their guest-dependent transport mechanism

Dimeric, trimeric, and tetrameric oligocholates with flexible 4-aminobutyroyl spacers caused the efflux of hydrophilic molecules such as carboxyfluorescein (CF) and glucose from POPC/POPG liposomes. Transport was greatly suppressed across higher-melting DPPC membranes. Lipid-mixing assays and dynamic light scattering (DLS) indicated that the liposomes were intact during the transport. Kinetic analysis supported the involvement of monomeric species in the rate-limiting step of CF transport, consistent with a carrier-based mechanism. Glucose transport, on the other hand, displayed a highly unusual zero-order dependence on the oligocholate concentration at low loading of the transporter. Different selectivity was observed in the oligocholate transporters depending on the guest involved.     

Aromatic foldamers with iminodicarbonyl linkers: their structures and optical properties

[structure: see text] Carboxamides possessing naphthalene rings connected by multiple iminodicarbonyl linkers were synthesized. These molecules forced the naphthalene rings to be placed in the positions facing each other, and they form helical foldamers both in solution and in the crystalline state. Their folding structures were investigated by single-crystal X-ray analysis and (1)H NMR spectroscopy. Their absorption and fluorescence spectra showed a red shift as the number of naphthalene moieties increased. This remarkable change is based on the intramolecular interaction between naphthalene moieties. Helicity of the foldamer can be controlled by the introduction of chiral auxiliaries at imide nitrogen atoms, which results in an observation of induced circular dichroism.     

Conformation of S-shaped aromatic imide foldamers and their induced circular dichroism

Conformation of aromatic foldamers possessing three aromatic rings in a sequence of anthracene-phenylene-anthracene linked with iminodicarbonyl was examined. Their folding structures were confirmed by single crystal X-ray analysis. Two conformations, straight-zigzag and helically-zigzag conformations, were found depending on the substituents at the imide nitrogen atom. Induced circular dichroism originated in the interaction of the upper and bottom anthracene moieties was observed both in solution and in the solid state.     

Facial amphiphiles in molecular recognition: From unusual aggregates to solvophobically driven foldamers

The term “facial amphiphiles” was originally used for molecules with the hydrophilic and hydrophobic groups located on two opposite faces, rather than at two ends as in the more conventional head/tail amphiphiles. Recent research has expanded this concept and created facially amphiphilic molecules with diverse topologies and intriguing properties. The geometry and the distribution of hydrophilic/hydrophobic groups on facial amphiphiles were key parameters influencing their properties. Intermolecular aggregation of facial amphiphiles generated a range of structures including dimers, vesicles, nanoclusters, and nanotubes. Intramolecular aggregation of facially amphiphilic repeat units in a molecule, on the other hand, allowed the molecule to respond to environmental stimuli through controlled conformational changes.     

Terahertz absorption spectra of some saccharides and their metal complexes

In this work, THz absorption spectra of some saccharides and their metal complexes were measured. The main purpose of this work is to investigate the M-O vibrations, intermolecular and intramolecular hydrogen bonds and other vibrations in the FIR region using powerful spectroscopic techniques adopting the metal-sugar complexes prepared in our laboratory. The M-O vibrations in the FIR spectra of metal-sugar complexes indicate the formation of metal complexes. The THz spectrum of glucose below 100cm(-1) was measured at first to confirm the THz experimental method. Characteristic absorption bands in the spectra of various samples are observed. THz spectra of saccharides below 100cm(-1) often have several absorption bands, and different saccharides have various absorption peaks in the THz region, which may be used to distinguish different saccharides. The differences in the number of bands observed are related to different structures of the samples, and these absorption bands are related to the collective motion of molecules. But the THz spectra of their metal complexes are different from the ligands, and no band appears in the region below 50cm(-1) at the present experimental condition, which indicates that THz spectroscopy may also be helpful to identify the formation of metal-sugar complexes, and the changes after complexation in the THz spectra below 100cm(-1) may be related to different metal ions. The metal-sugar complexes with similar crystal structures resemble mid-IR spectra, but their THz spectra may have some differences.     

Hydrogen bonded supramolecular polymers in moderately polar solvents

Hydrogen bonded assemblies are usually decomposed by polar organic solvents. However, we have succeeded in preparing a strongly associated supramolecular polymer which forms viscous solutions in competitive solvents such as tetrahydrofuran.     

Hydrogen bonded OH-stretching vibration in the water dimer

We have calculated the frequencies and intensities of the hydrogen-bonded OH-stretching transitions in the water dimer complex. The potential-energy curve and dipole-moment function are calculated ab initio at the coupled cluster with singles, doubles, and perturbative triples level of theory with correlation-consistent Dunning basis sets. The vibrational frequencies and wavefunctions are found from a numerical solution to a one-dimensional Schr?dinger equation. The corresponding transition intensities are found from numerical integration of these vibrational wavefunctions with the ab initio calculated dipole moment function. We investigate the effect of counterpoise correcting both the potential-energy surface and dipole-moment function. We find that the effect of using a numeric potential is significant for higher overtones and that inclusion of a counterpoise correction for basis set superposition error is important.     

Hydrogen bonded calixarene capsules kinetically stable in DMSO

Half-life times up to 4 days in DMSO at room temperature are observed for the decomposition of dimeric capsules of urea substituted calix[4]arenes held together by a combination of hydrogen bonds, mechanical entanglement and cation-pi interactions.     

Hydrogen bonded dimers of triurea derivatives of triphenylmethanes

Tri-(2-alkoxy-5-ureido-phenyl)methanes represent a novel self-complementary motif forming hydrogen bonded homo- and heterodimers in nonpolar, aprotic solvents as evidenced by 1H NMR and ESI-mass spectra and by the formation of heterodimers. MD simulations suggest the formation of hydrogen bonds of different strength in agreement with NMR data. The dimerization does not interfere with that of tetraurea calix[4]arenes. A combination of both motifs may be used therefore to build up larger structures via self-assembly processes. [structure: see text]     

A quadruply hydrogen bonded heterocomplex displaying high-fidelity recognition

An exceptionally strong quadruply hydrogen-bonded complex is formed between 2,7-diamido-1,8-naphthyridine 3 (DAN) and the butylurea of guanosine 6 (UG) in chloroform. The UG unit can be prepared in four steps from guanosine on a 10 g scale in excellent yields without chromatographic purification. The association constant (Kassoc approximately 5 x 10(7) M(-1)) for the UG.DAN complex determined by fluorescence energy transfer from the naphthyridine unit of 3 to coumarin 343 covalently linked UG (18) is among the highest reported for a neutral DNA base-pair analogue. The weak self-association of DAN (Kdimer < 10 M(-1)) and UG (Kdimer ca. 200-300 M(-1)) means that the UG.DAN complex forms with unparalleled fidelity.     

Hydrogen bonded co-crystallised layered isopropanol-pyrogallol[4]arenes

A novel isopropanol-pyrogallol[4]arene forms a layered structure via hydrogen bonding and C–H…π interactions. The layered structure results in encapsulation of one isopropanol molecule. The application of NMR methods to determine solution structures and crystal structures provides insight into host–guest properties and the molecular interactions between them.     

Hydrogen bonded polymer blends and the design of miscible polymeric antioxidants

The relative magnitude of the equilibrium constants describing self-association versus inter-association is an important factor in determining the phase behavior of polymers that hydrogen bond. In studies of sterically hindered phenolics we have found that poly(2,6-diisopropyl-4-vinylphenol) (PDIPP) only moderately self-associates, but strongly inter-associates with polymers containing groups such as ester carbonyls, ether oxygens, and the like. PDIPP is miscible with polytetrahydrofuran (PTHF) and simultaneously acts as an efficient polymeric antioxidant. This result points the way to the design of specific miscible polymeric antioxidants for polar polymers.     

Hydrogen bonded complexes of cyanuric acid with pyridine and guanidinium carbonate

Hydrogen bonded complexes of cyanuric acid (CA) with pyridine, [C₃N₃H₃O₃:C₅H₅N], 1, and guanidinium carbonate [C₃H₂N₃][C(NH₂)₃],2, have been prepared at room temperature and characterized by single-crystal X-ray diffraction. Structure of 1 shows pyridine molecules substituting the inter-tape hydrogen bond in CA by N-H… N and C-H…O hydrogen bonds. The structure reveals CA-pyridine hydrogen-bonded single helices held together by dimeric N-H…O hydrogen bonding between CA molecules. In2, the CA tapes, resembling a sine wave interact with the guanidinium cations through N-H…O and N-H…N hydrogen bonds forming guanidinium cyanurate sheets.