Vibrational assignment of the normal modes of 2-phenyl-4-(4-methoxy benzylidene)-2-oxazolin-5-one via FTIR and Raman spectra, and ab inito calculations

Raman and FTIR spectra of 2-phenyl-4-(4-methoxy benzylidene)-2-oxazolin-5-one were recorded in the regions, 100-3300 and 400-4000 cm(-1), respectively. Vibrational frequencies and intensities of the fundamental modes of this hetrocyclic organic molecule were computed using ab initio as well as AM1 semiempirical molecular orbital methods. Ab initio calculations were carried out with basis set up to RHF/6-311G. Conformational studies regarding the effect of moving the methoxy group in the 2-phenyl-4-(4-methoxy benzylidene)-2-oxazolin-5-one molecule to a different position on the ring was also carried out. Observed vibrational wavenumbers were found to be mostly consistent with ab initio values. The most intense mode of vibration observed at 1250 cm(-1) in Raman spectra, also observed as a strong band in FTIR, was assigned as C-O stretching vibration in the methoxy group. Asymmetric stretching vibrations between CC and CN bonds was predicted as most intense mode by our ab initio calculation.     

An experimental and theoretical study of the molecular structure and vibrational spectra of iodotrimethylsilane (SiIMe3)

The gas-phase molecular structure of iodotrimethylsilane (ITMS) has been determined from electron diffraction data. Infrared and Raman spectra have been completely assigned. The experimental work is supported by ab initio HF and MP2 calculations for the gas-phase structure determination and DFT(B3LYP) calculations, combined with Pulay's SQM method, for the vibrational spectra data.     

Hydrogen bonds: a comparison of semiempirical and ab initio treatments

H-bonding interactions calculated using the AM1, PM3 and SAM1 semiempirical molecular orbital methods are compared with the best available ab initio calculations for several intermolecular interactions of interest: acetic acid dimers, water/ acetylene, water/HCN, formaldehyde/acetylene, formaldehyde/HCN, ozone/acetylene, ozone/HCN, acetylacetone, melamine/ cyanuric acid, and nitromethane/ammonia. Experimental values are also presented where available. The energetic comparisons are based upon enthalpies of interaction from the ab initio calculations after counterpoise and vibrational corrections have been applied. Overall, AM1 seems to do best, except for O---H…O interactions, where none of the three methods excel.     

共轭烯烃的分子几何构型、电子结构和生成热的DMM和AM1、PM3的比较研究

运用Ｄｅｌｆｔ分子力学（ＤＭＭ）力场和程序以及半经验分子轨道ＡＭ１和ＰＭ３方法计算研究了丁二烯、苯、甲苯、联苯、苯乙烯、富烯、、环辛四烯、［２，２］对环烷和菲等１０个共轭烯烃分子的几何构型、电子结构和生成热．ＤＭＭ计算的几何构型和生成热与实验结果相吻合，电荷分布结果与从头计算结果较接近．ＡＭ１和ＰＭ３计算的几何构型较好，但计算的生成热与实验结果偏差较大．ＰＭ３计算值比ＡＭ１的稍好．     

Infrared and Raman Spectroscopy of Methylcyanodiacetylene (CH3C5N)

A spectroscopic study combining IR absorption and Raman scattering is presented for methylcyanodiacetylene (CH₃C₅N). Gas‐phase, cryogenic matrix‐isolated, and pure solid‐phase substance was analyzed. Out of 16 normal vibrational modes, 14 were directly observed. The analysis of the spectra was assisted by quantum chemical calculations of vibrational frequencies, IR absorption intensities, and Raman scattering activities at density functional theory and ab initio levels. Previous assignments of gas‐phase IR absorption bands were revisited and extended.     

A combined ab initio and semi-empirical study on the theoretical vibrational spectra and physical properties of polypyrrole

This study concentrates on the important conducting polymer, polypyrrole. Detailed atomistic molecular models have been developed with the help of ab initio and semi-empirical quantum mechanical calculations.The vibrational spectra of isolated pyrrole monomers and oligomers from n=1 and 2, where n is the number of structural repeat units used, have been computed using the ab initio 3-21G basis set. The results obtained are compared with data for the case of oligomers with n=2–5 for both neutral benzenoid and quinonoid oligopyrroles, from semi-empirical predictions obtained by AM1 and PM3. The trends in the computed harmonic force fields, vibrational frequencies and intensities are monitored as a function of the chain length. The data are analysed in conjunction with the trends in computed equilibrium geometries.Also the examination of the heat of formation of these two degenerate forms (quinonoid and benzenoid) has been conducted with respect to increases in the number of rings and the change of methods from AM1 to PM3.     

Theoretical study of C24N4 molecule

Both ab initio 6-31G, 3-21G and STO-3G basis sets and semiempirical PM3 and AM1 molecular orbital calculations are carried out on the C₂₄N₄ molecule of the T_d symmetry group. Results on the fully optimized structure which constrained T_d symmetry, molecular orbitals and vibrational frequency were obtained by both ab initio and semiempirical methods. The binding energy and various thermodynamic properties were also calculated via the PM3 and AM1 semiempirical methods. All the evidence of this work proves that the C₂₄N₄ molecule is stable and that its four six-membered rings with a remarkable delocalized C…C bond are similar to the related rings in the C₆₀ buckminsterfullerene structure.     

The vibrational and NMR spectra,conformations and ab initio calculations of aminomethylene,propanedinitrile and itsN-methyl derivatives

The IR and Raman spectra of aminomethylene propanedinitrile (AM) [H₂N-CH=C(CN)₂], (methylamino)methylene propanedinitrile (MAM) [CH₃NH-CH=C(CN)₂] and (dimethylamino)methylene propanedinitrile (DMAM) [(CH₃)₂N-CH=C(CN)₂] as solids and solutes in various solvents have been recorded in the region 4000-50 cm^–1. AM and DMAM can exist only as one conformer. From the vibrational and NMR spectra of MAM in solutions, the existence of two conformers with the methyl group orientedanti andsyn toward the double C=C bond were confirmed. The enthalpy difference H ⁰ between the conformers was measured to be 3.7±1.4 kJ mol^–1 from the IR spectra in acetonitrile solution and 3.4±1.1 kJ mol^–1 from the NMR spectra in DMSO solution. Semiempirical (AM1, PM3, MNDO, MINDO3) and ab initio SCF calculations using a DZP basis set were carried out for all three compounds. The calculations support the existence of two conformersanti andsyn for MAM, withanti being 7.8 kJ mol^–1 more stable thansyn from ab initio and 8.6, 13.4, 11.6, and 10.8 kJ mor^–1 from AM1, PM3, MNDO, and MINDO3 calculations, respectively. Finally, complete assignments of the vibrational spectra for all three compounds were made with the aid of normal coordinate calculations employing scaled ab initio force constants. The same scale factors were optimized on the experimental frequencies of all three compounds, and a very good agreement between calculated and experimental frequencies was achieved.     

Conformational stabilities and structural parameters of (CH3)(n)CH(3-n) CFO molecules

Variable temperature (-60 to -100 degrees C) studies of the infrared spectra (3500-400 cm(-1)) of propionyl fluoride (CH3CH2CFO) and 2-methylpropionyl fluoride ((CH3)2CHCFO), dissolved in liquid xenon have been recorded. From these data, the enthalpy difference has been determined to be 329 +/- 33 cm(-1) (3.94 +/- 0.39 kJ/mol) for propionyl fluoride with the trans conformer (methyl group eclipsing the oxygen atom) more stable than the gauche form. For 2-methylpropionyl fluoride, the enthalpy difference has been determined to be 297 +/- 30 cm(-1) (3.55 +/- 0.36 kJ/mol) with the gauche conformer (methyl group eclipsing the oxygen atom) more stable than the trans form. From these DeltaH values along with assigned torsional fundamentals for both conformers and accompanying "hot bands" the potential functions governing the conformational interchange have been calculated. Utilizing the infrared data from the xenon solution and ab initio frequency predictions from MP2/6-31G* calculations, a few reassignments of the fundamentals have been made. Ab initio calculations have been carried out with several different basis sets up to MP2/6-311 + G** from which structural parameters and conformational stabilities have been determined. Additionally, force constants, infrared intensities, Raman activities, depolarization ratios, and scaled vibrational frequencies have been determined from MP2/6-31G* calculations. Adjusted structural parameters have been obtained from combined ab initio predicted values and previously reported microwave data. These parameters are compared to those obtained from either the earlier microwave and/or electron diffraction studies. Similar ab initio calculations and structural parameter determinations have been carried out for acetyl fluoride (CH3CFO) and trimethylacetyl fluoride ((CH3)3CCFO) and compared to the corresponding experimental results when appropriate.     

Fourier transform infrared and raman spectra, vibrational assignment and ab initio calculations of terephthalic acid and related compounds

The Fourier transform infrared and Raman spectra of solid terephthalic acid, p-C6H4(COOH)2, have been recorded, and the Fourier transform Raman spectra for the terephthalate anion were measured. The wavenumbers for the band positions have been calculated in order to assign them. Moller-Plesset (MP2) and Density functional theory (DFT) calculations have been carried out with Huzinaga-Dunning basis sets (DZV). Also, a normal coordinate analysis through the Wilson-El'yashevich method was performed. The differences between the calculated ab initio spectra and the spectra of the solid phase have been interpreted with respect to the different C(2h) and C(i) local symmetry in the gas and in the solid phase, respectively, and considering also the formation of long-chains of terephthalic acid in the solid phase. In spite to the absence of experimental data for the cis conformation, calculations have been carried out and structural parameters and infrared intensities have been evaluated for the trans and cis conformations of terephthalic acid.     

Comparison of AM1 and PM3 semiempirical to ab initio methods in the study of Diels-Alder reactions of butadiene and cyclopentadiene with cyanoethylenes

Assuming a concerted synchronous mechanism with one transition state of the Diels-Alder reactions, the structures of the transition states and the activation energies for the reactions of butadiene and cyclopentadiene with cyanoethylenes were calculated by AM1 and PM3 semiempirical methods. The structural parameters were compared with those obtained by high level Gaussian calculations, whereas the activation energies were compared both with the ab initio calculations and those obtained experimentally. The structural properties calculated with PM3 methods are in general in better agreement with the ab initio calculations. The low level ab initio calculations are in many cases worse than the semiempirical methods. All predicted activation energies with both semiempirical methods are up to 300% higher than the experimental values. The predicted reactivity is also opposite to the experimental data. Only the very high level Gaussian calculations are in good correlation with experimental results. The predicted selectivity of the reaction is also opposite to the experimental facts. Two explanations are offered for this discrepancy: AM1 and PM3 methods cannot handle the calculation of the concerted Diels-Alder transition states and are not recommended to be used for that purpose, or this Diels-Alder reaction is not concerted but is stepwise.     

Polarized IR and Raman spectra and ab initio calculations for bis(guanidine) zirconium bis(nitrilotriacetate) hydrate single crystal [C(NH2)3]2[Zr[N(CH2COO)3]2](H2O)--the new laser Raman converter

Fourier transform polarized IR and Raman spectra of bis(guanidine) zirconium bis(nitrilotriacetate) hydrate single crystal [C(NH(2))(3)](2)[Zr[N(CH(2)COO)(3)](2)](H(2)O) have been measured in the regions 30-4000 and 80-4000 cm(-1) and correlated with X-ray structural data. The factor group analysis has been applied in the discussion of the dichroic dependence of the vibrational modes. The assignment of the internal vibrations for the [Zr(nitrilotriacetate)2]2- complex ion has been based on the ab initio quantum chemical calculations. The usefulness of the studied crystal as Raman laser converter was analyzed basing on the comparison of the spontaneous and stimulated Raman spectra.     

FTIR and FT-Raman spectra, assignments, ab initio HF and DFT analysis of xanthine

The molecular vibrations of xanthine were investigated in polycrystalline sample, at room temperature by Fourier transform infrared (FTIR) and FT-Raman spectroscopies. The spectra of the molecule have been recorded in the regions 4000-50 cm(-1) and 3500-100 cm(-1), respectively. Theoretical information on the optimized geometry, harmonic vibrational frequencies, infrared and Raman intensities were obtained by means of ab initio Hartree-Fock (HF) and density functional theory (DFT) gradient calculations with complete relaxation in the potential energy surface using 6-311++G(d,p) basis set. The vibrational frequencies which were determined experimentally from the spectral data are compared with those obtained theoretically from ab initio and DFT calculations. A close agreement was achieved between the observed and calculated frequencies by refinement of the scale factors. The infrared and Raman spectra were also predicted from the calculated intensities. Thermodynamic properties like entropy, heat capacity, zero point energy have been calculated for the molecule. Unambiguous vibrational assignment of all the fundamentals was made using the potential energy distribution (PED).     

Fourier-transform infrared and Raman spectra,and ab initio calculations for cadmium-n-di-iso-propylphosphorylguanidine-di-chloride (CdDPGCl2) complex

Cadmium-n-di-isopropylphosphorylguanidine-di-chloride (CdDPGCl2) was synthesized in the solid phase and characterized previously. The Fourier transform infrared and Raman spectra of (CdDPGCl2) in the solid state were recorded and analyzed. Emphasis was placed on the vibrational assignment of the [(O2P=O-[CdCl2]-HN=C) fragment of the complete molecular structure. With the aim of assisting the vibrational assignment of the experimental spectra, a comparison with the spectra of N-di-isopropylphosphorylguanidine ligand was carried out and ab initio calculations have been performed with several effective core potentials and valence basis sets (Hay-Wadt (HW) and Stevens-Basch-Krauss (SBK)). Due to our limited computational resources, hydrogen atoms replaced the isopropyl groups. The calculated geometrical parameters showed excellent agreement with the experimental, as well as the RHF/MP2 calculated infrared wave numbers, when compared to the IR/Raman experimental wave numbers.     

Semi-empirical (PM3 and AM1) and ab initio molecular orbital calculations of 1,2,4-oxadiazoles, 4,5-dihydro-1,2,4-oxadiazoles and 4,4-di-n-butyl-2-phenylbenzo-1,3-oxazine

Molecular orbital calculations using semi-empirical (PM3 and AM1) and ab initio (HF/6-31G) types have been carried out on several 3,5-disubstituted 1,2,4-oxadiazoles 1a–d, 5-n-butyl-3,5-diaryl-4,5-dihydro-1,2,4-oxadiazoles 2a–d, and 4,4-di-n-butyl-2-phenylbenzo-1,3-oxazine 3. A comparison of the results by the two computational procedures has been made. Transformation of the oxadiazole ring to 4,5-dihydro-1,2,4-oxadiazole having both aryl and n-butyl groups at C-5 exhibited interesting conformational features. Also, examination of 1,3-oxazine 3 gave an idea about the structure of this compound. The rotational barrier of each phenyl group in 1a and 1d has been calculated using the ab initio method HF/6-31G(d).     

Synthesis and vibrational study of platinum(II) and palladium(II) complexes of glyoxilic acid oxime

New platinum(II) and palladium(II) complexes of glyoxilic acid oxime (gao) have been prepared and characterised by infrared (4000–150 cm⁻¹) and Raman (4000–200 cm⁻¹) spectra. The gao acts as bidentate ligand bonding through the oxime nitrogen and carboxyl oxygen atoms to form neutral bis-chelate square-planar complexes. The lowest energy conformer of the gao ligand (ectt) was selected among 16 theoretically possible conformers on the basis of ab initio calculations at HF/3-21G*, HF/6-31G* and HF/6-311** levels of the theory from which structural parameters and conformational stabilities have been obtained. A complete vibrational assignment of the gao was performed for the lowest energy ectt conformer on the basis of ab initio optimised parameters and normal coordinate analysis calculations (PED). NCA calculations of the complexes studied were also performed.     

A resonance Raman,surface-enhanced resonance Raman,IR, and ab initio vibrational spectroscopic study of nickel(II) tetraazaannulene complexes

The IR and resonance Raman spectra of the nickel(II) complexes of dibenzo[b,i][1,4,8,11]tetraaza[14]annulene (TAA) and 5,7,12,14-tetramethyldibenzo[b,i][1,4,8,11]tetraaza[14]annulene (TMTAA) have been measured and compared with ab initio calculations of the vibrational wavenumbers at the B3-LYP level using the LanL2DZ basis set. An excellent fit is found between the experimental and calculated data, enabling precise vibrational assignments to be made. Surface-enhanced resonance Raman spectra were obtained following adsorption on Ag electrodes, with potentials in the range -0.1 to -1.1 V vs Ag/AgCl. There is evidence for contributions from both the electromagnetic and charge transfer (CT) surface enhancement mechanisms. The data indicate that variations in band intensities with electrode potential can be interpreted in terms of the CT mechanism.     

Vibrational spectroscopy (FTIR and FTRaman) investigation using ab initio (HF) and DFT (B3LYP) calculations on the structure of 3-Bromo phenol

The FT-IR and FT-Raman spectra of 3-Bromo phenol (3-BP) molecule have been recorded using Bruker IFS 66V spectrometer in the range of 4000-100 cm(-1). The molecular geometry and vibrational frequencies in the ground state are calculated by using the ab initio Hartree-fock (HF) and DFT (B3LYP) methods with 6-31G (d, p) and 6-311G (d, p) basis sets. The computed values of frequencies are scaled using a suitable scale factor to yield good coherence with the observed values. Making use of the recorded data, the complete vibrational assignments are made and analysis of the observed fundamental bands of molecule is carried out. The geometries and normal modes of vibrations obtained from ab initio HF and B3LYP calculations are in good agreement with the experimentally observed data. The differences between the observed and scaled wave number values of most of the fundamentals are very small in DFT than HF. The inductive effect of halogen atom in the molecule has also been investigated.     

Determination of the absolute configuration of chiral alpha-aryloxypropanoic acids using vibrational circular dichroism studies: 2-(2-chlorophenoxy) propanoic acid and 2-(3-chlorophenoxy) propanoic acid

The enantiomers of 2-(2-chlorophenoxy) propanoic acid and 2-(3-chlorophenoxy) propanoic acid were resolved on a chiral HPLC column and investigated using mid-infrared vibrational circular dichroism (VCD). Experimental infrared vibrational absorption and VCD spectra were measured in CDCl3 solution in the 2000-900 cm-1 region and compared with the ab initio predictions of absorption and VCD spectra. The predicted spectra were obtained with density functional theory using B3LYP/6-31G* basis set for the stable and dominant conformers. But the predicted spectra did not provide unambiguous structural information due to intermolecular hydrogen bonding in solution. To eliminate the hydrogen bonding effects, the acids were converted to the corresponding methyl esters and the experimental absorbance and VCD spectra of methyl esters were measured. B3LYP predicted spectra were also obtained for the stable and dominant conformers of the esters. From a comparison of the experimental VCD spectra of methyl esters with corresponding ab initio predictions, the absolute configurations of esters, and therefore of their parent acids, are unambiguously determined to be (+)-(R).     

Near ab initio quality molecular electrostatic potential maps using hybridization displacement charges at PM3 level and effects of geometrical changes in amino groups

Charge distributions, dipole moments, and molecular electrostatic potentials (MEP) around several molecules consisting of carbon, nitrogen, oxygen, fluorine, sulfur, and chlorine atoms were studied using the PM3 semiempirical method and the results compared with those obtained using ab initio calculations at the RHF/6‐31G** level. Thus it is shown that relative MEP values near different atoms can be obtained using hybridization displacement charges (HDC) obtained by employing PM3 density matrices that usually agree quite satisfactorily with the ab initio ones. Further, positions of ab initio MEP minima are correctly located and the corresponding relative MEP values usually correctly predicted using the PM3(HDC) charges distributed continuously in three dimensions according to the forms of squares of valence s atomic orbitals. The necessary parameters for HDC calculations using the PM3 method were optimized. It is shown how within the frameworks of both PM3 and AM1 methods the π electrons or lone pairs associated with amino group nitrogen atoms and ring atoms can be satisfactorily treated in different situations. © 2001 John Wiley & Sons, Inc. Int J Quant Chem 82: 299–312, 2001