PHOTOCLEAVAGE OF DNA: IRRADIATION OF QUINONE-CONTAINING REAGENTS CONVERTS SUPERCOILED TO LINEAR DNA

Irradiation (350 nm) of air-saturated solutions of reagents containing an anthraquinone group linked to quaternary alkyl ammonium groups converts supercoiled DNA to circular and to linear DNA. Generation of linear DNA does not occur by accumulation of numerous single-strand cuts but by coincident-site double-strand cleavage of DNA. Irradiation forms the triplet state of the anthraquinone, which reacts either by hydrogen atom abstraction from a sugar of DNA or by electron transfer from a base of the DNA. Subsequent reactions result in chain scission. The quinone is apparently reformed after this sequence and reirradiation leads to double-strand cleavage.     

A STUDY OF SOME POLYPYRIDYLRUTHENIUM(II) COMPLEXES AS DNA BINDERS AND PHOTOCLEAVAGE REAGENTS

The nature of the binding of several ruthenium polypyridyl complexes containing 2,2'-bipyridine (bipy), 4,4'-dimethyl-2,2'-bipyridine (DMB), 1,10-phenanthroline (phen), 4,7-diphenyl-1,10-phenanthroline (DPP), 2,2',2"-terpyridine (terpy), 2,2'-biquinoline (biq), 1,4,5,8-tetraazaphenanthrene (TAP) and 1,4,5,8,9,12-hexaazatriphenylene (HAT), with calf thymus DNA, poly[d(A-T)] and poly[d(G-C)] were studied by absorption and emission spectroscopy, DNA melting techniques, and emission lifetime measurements. In low ionic strength phosphate buffer, spectroscopic changes and DNA stabilization depended on the polypyridyl ligands present, and indicated binding that varied from substantially electrostatic to intercalative. Ru(bipy)2(HAT)2+ and Ru(phen)3(2+), which bind by partial intercalation, also show a strong preference for poly[d(A-T)]. The emission quantum yields for most complexes were increased in the presence of DNA. An exception was Ru(TAP)3(2+) which has a markedly reduced emission quantum yield and lifetime in the presence of poly[d(G-C)] or CT-DNA, due to photoredox interaction with quanines. Emission decays of the complexes generally showed multiexponential behaviour. The ability of the ruthenium complexes to sensitise DNA cleavage was determined using pBR322 plasmid DNA. Ru(TAP)3(2+) is the most efficient sensitiser while uncharged complexes and complexes with very short-lived excited states do not cleave DNA.     

ASYMMETRIC INDUCTION IN THE SOLID STATE PHOTOCHEMISTRY OF AMMONIUM SALTS*

A general approach to using crystal chirality in asymmetric synthesis is described. An example consists of the preparation of crystalline salts of dimethyl 9-amino-9,10-ethenoanthracene-11, 12-dicarboxylate (1) with optically active sulfonic acids. Photolysis of the salts in the solid state generates a product that has chiral centers in the amine-containing portion of the molecule (di-π-methane photorearrangement). The optical activity in the photoproduct was determined by polarimetry and NMR chiral shift reagent analysis, which revealed enantiomeric excesses ranging from 30 to 68% depending on the optically active sulfonic acid employed. In contrast to the results in the crystalline state, irradiation of the salts in acetonitrile gave racemic photoproduct.     

MOLECULAR MECHANISM OF DRUG PHOTOSENSITIZATION 7. PHOTOCLEAVAGE OF DNA SENSITIZED BY SUPROFEN

Abstract— Ultraviolet-A irradiation of a suprofen (2-[4-(2-thenoyl)phenyl]propionic acid) (SPF) buffered solution (pH 7.4) in the presence of supercoiled pBR322 DNA leads to single strand breaks with the formation of an open circular form and subsequent linearization of the plasmid. On the basis of agarose gel electrophoresis data of samples irradiated in an air-saturated solution or in an oxygen-modified atmosphere, and the effects of sodium azide, D₂O, mannitol, copper(II), superoxide dismutase, 2-H-propanol, deferoxamine and surfactants, we suggest a photosensitization mechanism involving singlet oxygen and free radicals. The higher rate of photocleavage in nitrogen compared to that in an air-saturated solution and the results obtained from oxygen consumption measurements support the hypothesis that both the type I and type II photosensitization mechanisms are operative and that oxygen quenches the excited state of the irradiated drug. The photosensitization model applied was in agreement with that previously applied to cell membrane SPF photoinduced damage. Interaction of the drug with DNA, studied through circular dichroism and fluorescence anisotropy, probably occurs through a surface binding mode. The experimental techniques used for assessing the photodamaging activity of this drug may be useful for screening of phototoxic compounds in the environment and for determining the active species involved.     

PHOTOCLEAVAGE OF DNA IN THE PRESENCE OF SYNTHETIC WATER-SOLUBLE PORPHYRINS

In the presence of oxygen and visible light, various synthetic water-soluble porphyrins cleave pBR 322 plasmid supercoiled DNA (form I) producing relaxed (form II) and linear (form III) DNA corresponding to single-strand and double-strand breaks respectively. Large variations are observed in the efficiency of the porphyrins containing a diamagnetic metal or no metal at all. Singlet oxygen (¹O₂) seems to be involved in the mechanism of cleavage consistent with the inhibitory effect of the azide anion, N^–₃. The higher efficiency of cationic porphyrins (as compared to anionic ones) is due to their greater affinity for DNA as shown by experiments carried out at either high ionic strength or in the presence of the surfactant, sodium dodecyl sulfate.     

UPPER EXCITED STATE PHOTOCHEMISTRY OF DNA

Abstract— The quantum yields for cyclobutylpyrimidine dimers, alkali-labile sites, and frank strand breaks in double-stranded DNA have been measured using low-intensity radiation at 199.8, 217.8, and 239.5 nm from a Raman-shifted frequency quadrupled Nd:YAG laser. The quantum yield for cyclobutylpyrimidine dimers was also measured using 254 nm radiation from a low-pressure mercury lamp. The quantum yield for cyclobutylpyrimidine dimers is constant within a factor of two between 254 and 199.8 nm except for 239.5 nm, indicating that upper excited singlet states of bases convert efficiently to the lowest singlet state. The quantum yields for alkali-labile sites and frank strand breaks both increase as the wavelength decreases but follow different patterns. These results indicate that alkali-labile sites form from a higher excited state of the base, whereas frank strand breaks form by excitation of the sugar-phosphate backbone.     

一些无机盐对甲烷的液相选择催化氧化

考察了无机盐Ｃｒ２（ＳＯ４）３，ＣｄＳＯ４，ＦｅＳＯ４，ＶＯＳＯ４，Ｃｅ（ＳＯ４）２，ＭｎＳＯ４，ＳｎＣｌ４和ＨｇＳＯ４在浓硫酸介质中对甲烷的催化活性，发现ＭｎＳＯ４，ＳｎＣｌ４和ＨｇＳＯ４对甲烷氧化有活性，在此基础上考察了ＨｇＳＯ４体系中气液体积比，温度，浓度，反应时间以及硫酸浓度地反应活性的影响，认为反应按亲电取代反应机理进行。     

PHOTOCHEMISTRY OF DNA CONTAINING IODINATED CYTOSINE*

Abstract— –Irradiation at 313 nm of compounds containing iodinated cytosine moieties results in the photolysis of iodine. Photolysis occurs with a quantum yield of 0·0224·024 for 5-iododeoxycytidine and 5-iododeoxycytidine monophosphate, and 0·004–0·008 for iodinated DNA as well as for iodinated polycytidylate. Photodegradation of the cytosine moiety occurs when air is present during irradiation, presumably due to the reaction of oxygen with the cytosyl radical formed when iodine is lost. This oxygen promoted photodegradation destroys the cytosine chromophore and is complete in the monomers but occurs to only a limited extent in the polymers. In the absence of oxygen or in the presence of ethanol, photodegradation is prevented and the loss of iodine leads exclusively to the formation of the cytosine chromophore. In DNA, the loss of iodine is accompanied by the formation of sugar damage and/or chain breaks. As measured by sedimentation in alkaline sucrose gradients, approximately one break is made for every six iodinqs lost in denatured DNA. The frequency of chain breakage per iodine photolyzed is reduced 2-fold in renatured DNA. Analysis in neutral gradients suggests that half of the breaks observed in alkali are alkali-labile bonds. Both ethanol and cysteamine reduce the number of chain breaks observed in alkali by ˜ 3-fold.     

ALTERATION OF GUANINE RESIDUES DURING PROFLAVINE MEDIATED PHOTOSENSITIZATION OF DNA

Abstract— Mild photodynamic treatments of proflavine-calf thymus DNA complexes induce a unique and quantitatively important alteration of the guanine residues which can be related to the lethal lesions due to the combined action of proflavine and light on phages. The 'altered guanine' is destroyed by HClO₄ but is recovered after partial DNA depurination under the form of two photoproducts. The first product, G_ox, elutes as guanine on a Sephadex column but has a modified UV absorbance spectrum. It gives rise by further irradiation to another product, X, which elutes at pH 9.7 as a pyrimidine compound and presented a maximal UV absorbance at 246 nm. Product X is also selectively released by piperidine fixation onto the photo-damaged DNA. The guanine degradation process is markedly decreased in the presence of the singlet oxygen quencher, NaN₃. The photodynamic lesion inhibits the enzymatic degradation of the DNA but generates locally denatured regions that are sensitive to S1 endonuclease.     

THE PHOTOCHEMISTRY OF 3-NITROBENZOYL AND 4-NITROBENZOYL AZIDES: POSSIBLE REAGENTS FOR PHOTOAFFINITY LABELING

Abstract— The photochemistry of 3- and 4-nitrobenzoyl azides was studied to examine their suitability for use in photolabeling procedures. These aroyl azides absorb light in the near UV-spectral region. Their irradiation leads both to photo-Curtius rearrangement with formation of the analogous isocyan-ates and to generation of nitrenes by loss of nitrogen. The chemical and spectroscopic properties of the aroyl nitrenes indicate that they are singlets in their ground states. These singlet nitrenes insert rapidly into unactivated, aliphatic carbon-hydrogen bonds, trap nucleophiles, and add to olefins to form aziridines with retention of stereochemistry. Photolabeling agents based on these azides may offer some advantages over conventional agents for the labeling of lipophilic sites.     

HETEROCYCLIC PHOSPHONIUM SALTS BY REACTION OF DIMETHYL(1,2-ALKADIENYL)-PHOSPHINE OXIDES WITH ELECTROPHILIC REAGENTS

Abstract

Salts of 2,5-dihydro-1,2-oxaphosphole have been prepared by reaction of dimethyl(1,2-alkadienyl)phosphine oxides with halogens, sulfenyl and selenenyl chlorides. The essential influence of tertiary carbenium ions for realization of oxaphospholic cyclization of phosphorylated allenes has been established.     

193 NM LIGHT INDUCES SINGLE STRAND BREAKAGE OF DNA PREDOMINANTLY AT GUANINE

Irradiation of DNA with 193 nm light results in monophotonic photoionization, with the formation of a base radical cation and a hydrated electron (φ_P1 = 0.048–0.065). Although >50% of the photoionization events initially occur at guanine in DNA, migration of the “hole” from the other bases to guanine occurs to yield predominantly its radical cation or its deprotonated form. From sequence analysis, the data reveal that 193 nm light induces single strand breaks (ssb) in double-stranded DNA preferential 3’ to a guanine residue. However, it has previously been reported that 193 nm light yields very low yields of ssb (<2% of the yield of eaq). The distribution of these ssb at guanine is nonrandom, showing a dependence on the neighboring base moiety. The efficiency of ssb formation at nonguanine sites is estimated to be at least one order of magnitude lower. The preferred cleavage at guanine is consistent with migration and localization of the electron loss center at guanine. It is argued that singlet oxygen and the photoionized phosphate group of the sugar moiety are not major precursors to ssb. At present, the mechanisms of strand breakage are not known although a guanine radical or one of its products remain potential precursors.     

PHOTOCHEMISTRY OF DNA USING 193 nm EXCIMER LASER RADIATION

Photoproducts in double-stranded DNA induced by 193 nm radiation have been investigated. Double-stranded, supercoiled pBR322 DNA in buffered aqueous solution was exposed to varying fluences of 193 nm radiation from an ArF excimer laser. The quantum yields for formation of cyclobutylpyrimidine dimers, frank strand breaks and alkali labile sites were calculated from the conversion of supercoiled (Form I) DNA to relaxed (Form II) DNA after treatment with Micrococcus luteus dimer-specific endonuclease, no treatment, or treatment with alkali and heat, respectively. The quantum yields were 1.65 (+/- 0.03) X 10(-3) for pyrimidine dimers, 9.4 (+/- 3.2) X 10(-5) for frank strand breaks and 9.6 (+/- 3.6) X 10(-5) for alkali labile sites. The quantum yields for pyrimidine dimers and strand breaks and alkali labile sites were not affected by 10 nM mannitol. The relative quantum yields for these DNA photoproducts induced by 193 nm radiation differed markedly from those produced by 254 nm radiation.     

PHEOMELANIN PHOTOCHEMISTRY. PHOTOLYSIS OF MODEL COMPOUNDS

Abstract— Phytochrome control of nitrate reductase activity has been studied in cotyledons and hypocotyls of light-grown Sinapis alba. Under polychromatic irradiation, an increase in the fluence rate of far-red light added to a constant source of photosynthetically active radiation causes a decrease in the phytochrome photoequilibrium and, in the hypocotyl, this results in decreased nitrate reductase activity. However, in the cotyledons this difference is only observed transiently. In both organs, enzyme activity is correlated with the level of the far-red light absorbing form of phytochrome, P_fr. These correlations are not altered when the fluence rate (with respect to phytochrome) is increased, suggesting that the responses are not fluence rate dependent. The results obtained are consistent with the notion that in fully de-etiolated seedlings, P_ft alone controls nitrate reductase activity.     

PHOTOCHEMISTRY OF RETINOCHROME

Abstract— Retinochrome is a photopigment found in the visual cells of cephalopods. It has been considered to act as a supplier of the 11- cis -retinal required for synthesis of rhodopsin, because its all-trans chromophore is isomerized to 11- cis form in the light. Light and thermal reactions of squid retinochrome were investigated by low-temperature spectrophotometry.
On irradiation with green light at liquid-nitrogen temperature, retinochrome (λ_max 496 nm, – 190°C) is converted mainly to an intermediate lumiretinochrome (λ_max 475 nm, – 190°C), its chromophore being changed to 11- cis -retinal. On irradiation with blue light at - 190°C, retinochrome is changed to a photosteady–state mixture (λ_max 487 nm, – 190°C) composed mainly of retinochrome and lumiretinochrome, since lumiretinochrome is partially regenerated back to retinochrome. Similarly, irradiation of lumiretinochrome with blue light also results in the same photosteady-state mixture, which can be completely reverted to lumiretinochrome on re-irradiation with green light.
Lumiretinochrome is stable at a wide range of temperatures from – 190°C to about – 20°C. Above – 20°C, it is further converted, thermally, into metaretinochrome (λ_max 470 nm), which is the same bleached product as has been observed on irradiation of retinochrome at room temperatures. Thus, the light-bleaching process of retinochrome is rather simple compared with that of rhodopsin.     

PHOTOCHEMISTRY OF METHYLATED RHODOPSINS

Abstract— Rhodopsin, in which the active-site Schiff-base lysine has been chemically modified by monomethylation, is unable to form the deprotonated Schiff base bleaching intermediate, rnetarhodop-sin II. The photochemistry of the methylated Schiff base rhodopsin stops at the metarhodopsin I stage, which then slowly decays to all-trans retinal and opsin. Methylation of the non active-site lysines does not block the photochemical transformation but does speed up the formation and decay of the metarhodopsins.     

PHOTOCHEMISTRY OF MEROCYANINE 540

The photophysical properties of merocyanine 540 have been determined in methanol solution over a modest temperature range. Triplet state population is inefficient (the limiting triplet quantum yield being 0.25) due to rapid isomerization of the central double bond from the first excited singlet state. Activation energies have been measured for isomerization from the excited singlet state (20 kJ mol-1) and for conversion of the resultant cis-isomer back to the original trans-form (63 kJ mol-1), both processes involving formation of a twisted species. The dye is easily oxidized to give an unstable adduct which decomposes on the sub-ms timescale. Reversible redox chemistry occurs upon excitation in the presence of electron acceptors. These various observations are discussed in terms of the known chemotherapeutic activity of MC540 and it is concluded that the most probable mechanisms for cytotoxicity involve either local thermal disruption of cell membranes or in situ photogeneration of toxins derived from breakdown of the dye.     

配合物光化学回顾与展望

本文简述了配合物光化学的近期进展和将来趋势.