Structure and stability of thioureate anions with water, DFT calculations

Structure and stability of thioureate anion with the water clusters CSNH₂NH⁻-(H₂O)_n = 1–7, are studied, using density functional theory. Molecular structures and the stability of the clusters are discussed based on the calculation results of the stable conformers and their relative energies. All the clusters are stable thermodynamically in gas phase with respect to separate monomers. The clusters are stabilized progressively with an increasing number of water molecules, as indicated by the increasing of the binding energies. The binding energies of CSNH₂NH⁻ and a water molecule are 14.34 and 16.36 kcal/mol for cis CSNH₂NH⁻ and trans CSNH₂NH⁻, respectively. As the reaction in aqueous solution progresses, the CS bond distance increases monotonically, indicating that the CS bond of the thioureate anion unit in the clusters is de-stabilized with an increasing number of water molecules.     

Supramolecular formation by aromatic ring stacking and hydrogen bonding in lanthanide(III) complexes with amino acids and 1,10-phenanthroline

[Eu(ABA)(phen)₂(H₂O)₃](ClO₄)₃·3phen·4.5H₂O (1) and [Eu(Val)(phen)₂(H₂O)₃](ClO₄)₃·3phen·2H₂O (2) are two new europium complexes with amino acids and 1,10-phenanthroline (phen=1,10-phenanthroline, ABA=-amino butyl acid, Val= -valine). Their crystal structures were measured by X-ray crystallography. Europium atoms in both complexes are nine-coordinated with bidentate 1,10-phenanthroline and carboxylate anion of amino acids, and water molecules. In the solid state, 1 and 2 have a structure involving aromatic stacking of the coordinated and non-coordinated 1,10-phenanthroline and the oxygen atoms of non-coordinated perchlorate anions being H-bond acceptors connect [Eu(ABA)(phen)₂(H₂O)₃]³⁺·3phen·4.5H₂O or [Eu(Val)(phen)₂(H₂O)₃]³⁺·3phen·2H₂O in their structures. In their interactions, several C–HO bonds play an important role. Owing to their different amino acid ligands and the number of lattice water molecules, there is some difference in their hydrogen bond patterns in 1 and 2. The side chain of -valine is involved in the formation of C–HO bonds. Hydrogen bond and π–π interactions determine the supramolecular formation of three-dimensional net works of both complexes.     

Effect of high coverages on proton transfer in the zeolite/water system

The density functional theory and Hartree–Fock methods were used to investigate the proton transfer reaction for a series of model clusters of zeolite/(H₂O)_n; n=1,2,3, and 4. Without promoted water, the hydrogen-bonded dimer of the water/zeolite system exists as a simple hydrogen-bonded complex, ZOH.(H₂O)₂, and no proton transfer occurs from zeolite to water. The third promoted water, ZOH(H₂O)₂H₂O, was found to induce a pathway for proton transfer, but at least addition two promoted molecules, ZO(H₃O⁺)H₂O(H₂O)₂, must be involved for complete proton transfer from zeolite to H₂O. The results show that the hydronium ion in water cluster adsorbed on zeolite, ZO(H₃O⁺)(H₂O)₃, can considerably affect the structure and bonding of the hydrogen-bonded dimer of water. The OO distance is contracted from 2.818 Å found in the neutral complex, ZOH(H₂O)₄, to 2.777 Å for ion-pair complex, ZO(H₃O⁺)(H₂O)₃. The distance between the oxygen of the hydronium ion and the zeolitic acid site oxygen is predicted to be 2.480 Å which is in good agreement with the experimentally observed value of 2.510 Å. The corresponding density functional adsorption energy of the high coverages of adsorbing molecules on zeolite is calculated to be −9.14 kcal/mol per molecule at B3LYP/6-311+G(d,p) level of theory and compares well with the experimental observation of −8.20 kcal/mol.     

Large heteropolymetalate complexes formed from lanthanide (Y, Ce, Pr, Nd, Sm, Eu, Gd), nickel cations and cryptate [As4W40O140]: synthesis and structure characterization

A new family of heteropolytungstate complexes (NH₄)₂₁[Ln(H₂O)₅{Ni(H₂O)}₂As₄W₄₀O₁₄₀]·xH₂O(Ln=Y, Ce, Pr, Nd, Sm, Eu, Gd) were prepared by the reaction of Na₂₇[NaAs₄W₄₀O₁₄₀]·60H₂O with NiCl₂·6H₂O and Ln(NO₃)₃·xH₂O at pH≈4.5. The crystal structures of (NH₄)₂₁[Gd(H₂O)₅{Ni(H₂O)}₂As₄W₄₀O₁₄₀]·51H₂O was determined by X-ray diffraction analysis and element analysis. The compound crystallizes in the monoclinic space group P2₁/n with a=19.754(3), b=24.298(4), c=39.350(6) Å, β=100.612(3)°, V=18564(5) ų, Z=2, R1(wR₂)=0.0544(0.0691). The central site S1 and two opposite sites S2 of the big cyclic ligand [As₄W₄₀O₁₄₀]²⁸⁻ are occupied by one Ln³⁺and two Ni²⁺, respectively, each site supply four O_d coordinating to metal ion, another one water molecule and other five water molecules coordinate, respectively, to Ni²⁺and Ln³⁺. Polyanion [Ln(H₂O)₅{Ni(H₂O)}₂As₄W₄₀O₁₄₀]²¹⁻ has C_2v symmetry. IR and UV–vis spectra of [NaAs₄W₄₀O₁₄₀]²⁷⁻ of the title compounds are discussed.     

Computational treatment of the microsolvation of neutral and zwitterionic forms of alanine

B3LYP/6-31++G** and MP2/6-31++G**//B3LYP/6-31++G** calculations are reported for the structures of neutral alanine–(H₂O)_n and zwitterionic alanine–(H₂O)_n clusters where n = 2–10. Optimized geometries and energies were obtained. In general, with an increasing number of water molecules, the hydrated zwitterionic form becomes more thermodynamically stable. In the presence of six or seven water molecules, the energetics indicate that the two forms may coexist. Eight water molecules are sufficient to computationally guarantee the reported experimental observation of zwitterionic dominance in solution.     

A density functional study on hydrated clusters of orthoboric acid, B(OH)3(H2O)n (n=1–5)

We have calculated the optimized structures and stabilization energies for hydrated clusters of orthoboric acid molecule, B(OH)₃(H₂O)_n (n=1–5), with a hybrid density functional approach. Although some ion-pair structures are revealed in the case of n=4 and 5 clusters, the most stable structure is found to be a non-proton-transferred form up to n=5 hydrated clusters. The calculated IR spectra of the stable B(OH)₃(H₂O)_n of n=3–5 clusters predict small red shifts of hydrogen-bonded OH frequencies. These geometry and IR results are related to the weak acidity nature of orthoboric acid.     

Thermal decomposition study on mixed ligand thymine complexes of divalent nickel(II) with dianions of some dicarboxylic acids

Thermal decomposition of mixed ligand thymine (2,4-dihydroxy-5-methylpyrimidine) complexes of divalent Ni(II) with aspartate, glutamate and ADA (N-2-acetamido)iminodiacetate dianions was monitored by TG, DTG and DTA analysis in static atmosphere of air. The decomposition course and steps of complexes [Ni(C₅H₆N₂O₂)(C₄H₅NO₄)²⁻(H₂O)₂]·H₂O, [Ni(C₅H₆N₂O₂)(C₅H₇NO₄)²⁻(H₂O)₂]·H₂O and [Ni(C₅H₆N₂O₂)(C₆H₈N₂O₅)²⁻(H₂O)₂]·1.5H₂O were analyzed. The final decomposition products are found to be the corresponding metal oxides. The kinetic parameters namely, activation energy (E*), enthalpy (ΔH*), entropy (ΔS*) and free energy change of decomposition (ΔG*) are calculated from the TG curves using Coats–Redfern and Horowitz–Metzger equations. The stability order found for these complexes follows the trend aspartate > ADA > glutamate.     

Crystalline calcium phenylphosphonate—thermodynamic data on n-alkylmonoamine intercalations

Lamellar crystalline calcium phenylphosphonate, as anhydrous Ca(HO₃PC₆H₅)₂ and hydrated Ca(HO₃PC₆H₅)₂·2H₂O compounds, were used as hosts for intercalation of polar n-alkylmonoamine molecules of the general formula CH₃(CH₂)_nNH₂ (n=0–4, 7) in water or 1,2-dichloroethane. An increase in the interlayer distance was observed. The exothermic enthalpic values for intercalation increased with the number of carbon atoms and with increasing concentration of the amines. The intercalation followed by a titration procedure in the solid/liquid interface with Ca(HO₃PC₆H₅)₂·2H₂O and Ca(HO₃PC₆H₅)₂ gave the enthalpy/number of carbons correlations: Δ_intH=−(1.74±0.43)–(1.30±0.13)n_c and Δ_intH=−(4.15±0.15)–(1.07±0.03)n_c, for water and 1,2-dichloroethane, respectively. A similar correlation Δ_intH=−(4.27±0.80)–(1.85±0.21)n_c was obtained in water by using the ampoule breaking procedure for Ca(HO₃PC₆H₅)₂·2H₂O. The increase in exothermic enthalpic values with the increase in n-aliphatic carbon atoms is more pronounced for the anhydrous compound and also when using the ampoule breaking procedure. The Gibbs free energies are negative. Positive entropic values favor intercalation in these systems.     

MC/AM1-SCI study of the effect of hydration shells on the nitrogen hyperfine coupling constant of the (CH3)2NO radical in aqueous solution

A combination of Monte Carlo (MC) simulation and semi-empirical AM1 molecular orbital (MO) singly-excited configuration interaction (SCI) calculation was applied to dimethyl nitroxide (DMNO) in aqueous solution and the solvent effect on the hyperfine coupling constant (HFCC) of nitrogen in DMNO was analyzed. During the MC simulation, 100 solution structures were picked up. For each solution structure, the DMNO–(H₂O)_n (n=1–40) clusters were cut out and the AM1-SCI calculation was applied to the cluster as a supermolecule. The HFCC of nitrogen was obtained by averaging the 100 solution structures. The H₂O molecules included in the supermolecule were determined by two different types of selection and the contribution of H₂O molecules to the HFCC was well elucidated in relation to the hydration shell structure.     

2D Cu(I) and 3D mixed-valence Cu(I)/Cu(II) coordination polymers: Synthesis and structural characterization of [CuCl(pyz-H)2]·2H2O and [Cu2Cl2(pyz)(H2O)]·H2O (pyz-H = pyrazinic acid)

Two new coordination polymers of copper(I) chloride and pyrazinic acid (pyz-H), namely [CuCl(pyz-H)₂]·2H₂O (1) and [Cu₂Cl₂(pyz)(H₂O)]·H₂O (2) have been prepared and characterized by spectroscopic, magnetic and crystallographic methods. The overall physical measurements suggest that 1 is diamagnetic and contains monodentate N-pyrazinic acid, whereas 2 is paramagnetic and contains tridentate N,N′,O- chelating bridging pyrazinato anion. In the structure of 1 as elucidated by X-ray single crystal analysis, the asymmetric units [CuCl(pyz)₂] are linked together forming a zigzag chain with tetrahedral copper(I) environment. The two lattice water molecules form hydrogen bonds with the uncoordinated N atom and carboxylate group O atom of pyz-H molecules. The Cu–N bond lengths are 2.009(6) Å and Cu–Cl distances are 2.337(2) Å. Complex 2 has a three-dimensional structure with the chains [Cu(I)Cu(II)(C₅H₃N₂O₂)Cl₂(H₂O)] interconnected by [Cu(I)Cl₂N] tetrahedral unit and [Cu(II)NO₂Cl₂] polyhedra. The Cu(I)–Cl and Cu(I)–N distances are 2.327(2)–2.581(2) Å and 1.988(6) Å, respectively, whereas the Cu(II)–Cl and Cu(II)–N bond lengths are 2.258(2), 2.581(2) Å, and 2.017(6) Å, respectively. Hydrogen bonds of the type O–HO are formed between lattice and coordinated water, and carboxylate oxygens of pyrazinato ligand giving rise to a three-dimensional network. The Cl⁻ anions act as bridging ligands in both complexes. The magnetic data of complex 2 have been measured from 2 to 300 K and discussed.     

Three interpenetrated frameworks constructed by long flexible N,N′-bipyridyl and dicarboxylate ligands

Three interpenetrated polymeric networks, {[Co(bpp)(OH-BDC)] · H₂O}_n (1) [Ni(bpp)_1.5(H₂O)(OH-BDC)]_n (2) and {[Cd(bpp)(H₂O)(OH-BDC)] · 2H₂O}_n (3), have been prepared by hydrothermal reactions of 1,3-bis(4-pyridyl)propane (bpp), 5-hydroxyisophthalic acid (OH-H₂BDC), with Co(NO₃)₂ · 6H₂O, Ni(NO₃)₂ · 6H₂O and Cd(NO₃)₂ · 4H₂O, respectively. Single-crystal X-ray diffraction analyses reveal that the three compounds all exhibit interpenetrated but entirely different structures. Compound 1 is a fourfold interpenetrated adamantanoid structure with water molecules as space fillers, in which bpp adopts a TG conformation (T = trans, G = gauche). Compound 2 is an interdigitated structure from the interpenetrated long arms of one-dimensional molecular ladders, while bpp in 2 adopts both TT and TG conformations. Compound 3 is a twofold interpenetrated three-dimensional network from a one-dimensional metal-carboxylate chain bridged by TG conformational bpp. The hydrogen bonding interactions in 1–3 further stabilize the whole structural frameworks and play critical roles in their constructions.     

Structure and conformational properties of carbonylbisimidosulfuryl fluoride, O=C(N=S(O)F2)2

The molecular structure and conformational properties of O=C(N=S(O)F₂)₂ (carbonylbisimidosulfuryl fluoride) were determined by gas electron diffraction (GED) and quantumchemical calculations (HF/3-21G* and B3LYP/6-31G*). The analysis of the GED intensities resulted in a mixture of 76(12)% syn–syn and 24(12)% syn–anti conformer (ΔH⁰=H⁰(syn–anti)−H⁰(syn–syn)=1.11(32) kcal mol⁻¹) which is in agreement with the interpretation of the IR spectra (68(5)% syn–syn and 32(5)% syn–anti, ΔH⁰=0.87(11) kcal mol⁻¹). syn and anti describe the orientation of the S=N bonds relative to the C=O bond. In both conformers the S=O bonds of the two N=S(O)F₂ groups are trans to the C–N bonds. According to the theoretical calculations, structures with cis orientation of an S=O bond with respect to a C–N bond do not correspond to minima on the energy hyperface. The HF/3-21G* approximation predicts preference of the syn–anti structure (ΔE=−0.11 kcal mol⁻¹) and the B3LYP/6-31G* method results in an energy difference (ΔE=1.85 kcal mol⁻¹) which is slightly larger than the experimental values. The following geometric parameters for the O=C(N=S)₂ skeleton were derived (r_a values with 3σ uncertainties): C=O 1.193 (9) Å, C–N 1.365 (9) Å, S=N 1.466 (5) Å, O=C–N 125.1 (6)° and C–N=S 125.3 (10)°. The geometric parameters are reproduced satisfactorily by the HF/3-21G* approximation, except for the C–N=S angle which is too large by ca. 6°. The B3LYP method predicts all bonds to be too long by 0.02–0.05 Å and the C–N=S angle to be too small by ca. 4°.     

Structural characterisation of [Pt(NH3)4]2[W(CN)8][NO3]·2H2O donor–acceptor complex

The bimetallic [Pt(NH₃)₄]₂[W(CN)₈][NO₃]·2H₂O is characterised by single-crystal X-ray diffraction [S.G.P2₁/m(11), a=8.0418(7), b=19.122(2), c=9.0812(6) Å, Z=2]. All platinum centres have the square-plane D_4h geometry with average dimensions Pt(1)–N 2.042(2) and Pt(2)–N 2.037(10) Å. The octacyanotungstate anion has the square-antiprismatic D_4d configuration with average dimensions W(1)–C 2.164(13), C–N 1.140(12), W(1)–N 3.303(5) Å. The structure exhibits two different mutual orientations of Pt versus W units resulting in Pt(2)–W(1), W(1)^* separations of 4.77(2), 4.55(2)^* and Pt(1)–W(1) of 6.331(8) Å. A centrosymmetric structure reveals groups of two distinct columns: the first is formed by intercalated NO₃⁻ between parallel [Pt(1)(NH₃)₄]²⁺ planes and the second consists of [W(CN)₈]³⁻ interlayered by, parallel to square faces of W-antiprisms, [Pt(2)(NH₃)₄]²⁺. The structure is stabilised through a three-dimensional hydrogen bond network via nitrogen atoms of cyanide ligands, hydrogen atoms of NH₃ ligands, water molecules and oxygen atoms of NO₃⁻ counteranions. The vibrational pattern and the range of ν(CN) frequencies attributable to the electronic environment of W(V) and W(IV) are consistent with the ground state Pt(II)↔W(V) charge transfer.     

Ab initio structural trends and torsional sensitivity in n-hexane and comparisons with crystallographic structural results

The molecular structures of n-hexane were determined by RHF/4-21G ab initio geometry optimization at 30° grid points in its three-dimensional τ₁(C11–C8–C5–C1), τ₂(C14–C11–C8–C5), τ₃(C17–C14–C11–C8) conformational space. Of the resulting 12×12×12=1728 grid structures, 468 are symmetrically non-equivalent and were optimized constraining the torsions τ₁, τ₂, and τ₃ to the respective grid points, while all other structural parameters were relaxed without any constraints. From the results, complete parameter surfaces were constructed using natural cubic spline functions, which make it possible to calculate parameter gradients, |P|=[(∂P/∂τ_i)²+(∂P/∂τ_j)²]^1/2, where P is a C–C bond length or C–C–C angle. The parameter gradients provide an effective measure of the torsional sensitivity of the system and indicate that dynamic activities in one part of the molecule can significantly affect the density of states, and thus the contributions to vibrational entropy, in another part. This opens the possibility of dynamic entropic conformational steering in complex molecules; i.e. the generation of free energy contributions from dynamic effects of one part of a molecule on another. When the conformational trends in the calculated C–C bond lengths and C–C–C angles are compared with average parameters taken from some 900 crystallographic structures containing n-hexyl fragments or longer C–C bond sequences, some correlation between calculated and experimental trends in angles is found, in contrast to the bond lengths for which the two sets of data are in complete disagreement. The results confirm experiences often made in crystallography. That is, effects of temperature, crystal structure and packing, and molecular volume effects are manifested more clearly in bond lengths than bond angles which depend mainly on intramolecular properties. Frequency analyses of the τ₁, τ₂ and τ₃ torsional angles in the crystal structures show conformational steering in the sense that, if τ₁ is trans peri-planar (170°≤τ₁≤180°; −180°≤τ₁≤−170°), the values of τ₂ and τ₃ are clustered closely around the ideal gauche (±60°) and trans (±180°) positions. In contrast, when τ₁ is in the region (50°≤τ₁≤70°), there is a definite increase in the populations of τ₂ and τ₃ at −90 and −150°.     

Crystal structure and infrared spectra of dicesium trans-tetraaquadichlorochromium(III) chloride

The crystal structure of dicesium trans-tetraaquadichlorochromium(III) chloride Cs₂Cr^IIICl₅·4H₂O with trans-[M^IIIX₂(H₂O)₄]⁺ complex ions (space group C2/c, Z=4, a=1915.3(4) pm, b=614.1(1) pm, c=1392.0(3) pm, and β=118.24(3)°, final R1=0.0246 for 2100 unique reflections) was redetermined by single-crystal X-ray diffraction studies. It was found to crystallize in a 2c super structure of the structure reported previously (Inorg. Chem. 20 (1981) 1566; Inorg. Chem. 36 (1997) 2248). The obtained structure data now agree with the results of infrared spectroscopic studies, which has been confirmed in this work, namely that there are two different hydrate H₂O molecules in the structure. Phase transitions, static or dynamic disorder of the hydrate H₂O molecules, and space group C2/m proposed in the literature were ruled out. The coordinates of the four hydrogen positions derived from the X-ray data have been improved via the O–H distances derived from the wave numbers of the OD stretching modes of matrix isolated HDO molecules (2426, 2323, and 2306 cm⁻¹, 263 K) by using the ν_OD versus r_O–H correlation curve reported in the literature (J. Mol. Struct. 404 (1997) 63). The ν_OD versus r_HCl correlation curve reported by Mikenda (J. Mol. Struct. 147 (1986) 1) should be improved, especially for strong hydrogen bonds. The two hydrate H₂O molecules of the title compound are strongly distorted with a weak and a relatively strong O–HCl hydrogen bond each thus intramolecular coupling of the two OH stretching vibrations to coupled ones is largely reduced and, hence, the wavenumbers of the OH and OD stretching modes of the HDO molecules mainly resemble those of the H₂O and D₂O molecules. The strength of the hydrogen bonds is in accordance with the predictions of the competitive and synergetic effects. Chloro ligands are weaker hydrogen bond acceptor groups than chloride ions.     

Dinuclear transition metal compounds of a decadentate pyrazole-containing chelating ligand. X-ray crystal structure of Co2(tthd)(ClO4)4(H2O)2(MeOH)1.75

A potentially decadentate ligand, 1,1,4,7,10,10-hexakis(3,5-dimethyl-1-pyrazolylmethyl)-1,4,7,10-tetraazadecane (tthd), has been synthesized from the reaction of tri-ethylenetetramine with six equivalents of N-hydroxymethyl-3,5-dimethylpyrazole. The tthd ligand forms coordination compounds, M₂(tthd)(ClO₄)₄(H₂O)_x, when M is Co, Ni, Cu, Zn and Cd and x = 4–8; and M₂(tthd)(A)₂(ClO₄)₂(H₂O)_x when M is Co and Ni, A is NCS or Cl, and x = 4–8. The cobalt compound, Co₂(tthd)(ClO₄)₂(H₂O)₂(MeOH)_1.75, crystallizes in the triclinic space group P1, a = 1.959(2), b = 1.5657(3), c = 2.1244(3) nm, = 105.5(1), β = 96.9(1), γ = 112.1(1). Due to severe disorder of the anions the structure could only be refined to an R_w, value of 0.099. The ligand acts as a decadentate, dinucleating ligand. The cobalt ions are distorted octahedrally surrounded by five N-atoms of the tthd ligand and an O-atom of water occupying the sixth coordination place. The other perchlorate compounds have very similar structures, as can be concluded from spectroscopic data.

In the thiocyanate and chloride compounds the anions have replaced the coordinated water molecules, resulting in octahedral Ni compounds. With Co thiocyanate, however, tthd acts as an octadentate ligand, resulting only in five-coordinated compounds.     

First principles study of the structure, electronic state and stability of SinCm anions

Structure, electronic state and energy of Si_nC⁻ and Si_nC⁻₂ (n=1–7) anions have been investigated using the density functional theory. Structural optimization and frequency analysis are performed at the level B3LYP/6-311G(d). The charged-induced structural changes in these anions have been discussed. The strong C–C bond is also favored over C–Si bonds in the Si_nC⁻_m anions in comparison with corresponding neutral cluster. Among different Si_nC⁻ and Si_nC⁻₂ (n=1–7) anions, Si₃C⁻, Si₅C⁻ and Si₂C⁻₂ are most stable. Their stability has a decreasing tendency with the increase in the size of these clusters.     

Infrared study of νOD modes in isotopically dilute (HDO) kieserite-type compounds MXO4·H2O (M=Mn, Co, Ni, Zn, and X=S, Se) with matrix-isolated M′ and X′O4 guest ions

The hydrogen bond strength in kieserite-type sulfate and selenate monohydrates has been studied by the method of double-matrix spectroscopy. The infrared spectra of isotopically dilute (matrix-isolated HDO molecules) kieserite-type compounds MXO₄·H₂O (M=Mn, Co, Ni, Zn, and X=S, Se) with matrix-isolated X′O₄²⁻ and M′²⁺ guest ions are presented and discussed in the region of the OD stretching modes. The OD frequencies indicate that the compounds under investigation form comparatively strong hydrogen bonds. The frequency shifts of the uncoupled OD stretching modes of the HDO molecules within the isostructural series and those influenced by the guest ions, and the strength of the hydrogen bonds formed, are discussed in terms of the respective O_wO distances, which hint at stronger hydrogen bonds for the sulfate series than for the selenate one by mistake, the larger hydrogen bond acceptor capability of SeO₄²⁻ ions compared to SO₄²⁻ ones, the different metal–water interactions and repulsion potentials of the lattice, and the reorientation of the water molecules caused by the guest ions. The shifts of the OD stretches of the ODOSe′O₃ bonds (Se′O₄²⁻ matrix isolated) to the lower wavenumbers as compared to the parent selenates are caused by the reorientation of the hydrate water molecules and strengthening the hydrogen bond to the stronger acceptor and vice versa. When smaller metal ions having smaller M–OH₂ bond lengths and, hence, stronger synergetic effect replace larger ones, the OD stretches are shifted to lower wavenumbers as compared to those due to the host M–O_wO bonds and vice versa.     

2,4-二羟基苯乙酮缩异烟酰腙的实验和DFT理论研究:合成、晶体结构和性质及量化计算

合成了一种酰腙类Schiff碱2,4-二羟基苯乙酮缩异烟酰腙(C₁₄H₁₃N₃O₃,H₂L),经元素分析、红外光谱、紫外光谱、荧光光谱和热重分析等技术手段进行了表征。 用X射线单晶衍射测定了它的晶体结构,该晶体属单斜晶系,C2/c空间群,晶胞参数a=2.0102(2) nm,b=0.75891(8) nm,c=1.9530(2) nm,α= 90°,β=111.481(12)°,γ=90°,V=2.7725(5) nm³,Z=4,D_c=1.4292 g/cm³,R₁=0.0422,wR₂=0.1113,F(000)=1256。 同时进行了量子化学计算研究。 使用Gaussian09量子化学程序包, 在密度泛函理论(DFT)的B3LYP/6-31G(d)水平,对化合物的分子结构进行全参数优化计算,获得了热力学参数和几何结构参数,对分子的总能量及前线分子轨道、Mulliken电荷分布进行了分析讨论;同时,用TD-DEF方法计算了化合物的电子吸收光谱和荧光发射光谱。     

Local analysis and comparative study of the hydrogen bonds in the linear (HCN)n and (HNC)n clusters

B3LYP/6-311+G(2d,p), the density functional theory method of 98 package, is applied to study the hydrogen bonding of a series of linear (HCN)_n and (HNC)_n molecular clusters (for n=1–10). By the localization analysis methods we developed, pair-wised σ type H-bond orders and bond energies are calculated for each pair of the two near-by molecules in both (HCN)_n and (HNC)_n clusters. The calculated results are checked well with the shortening of N–H or C–H distance, the elongation of CH or NH bond distance, and the red shift of stretching frequencies of CH or NH. All pieces of evidence show that the central pair of the two molecules forms the strongest H bond when n of (HCN)_n or (HNC)_n is even, and the two middle pairs form the two strongest H bonds when n is odd. Two terminal pairs of HCN or HNC molecules always form the two weakest H-bonds in each molecular cluster. When comparing molecular cluster energies between (HCN)_n and (HNC)_n for various values of n, the well-known (HCN)_n is found more stable than the related (HNC)_n from energy calculation. However, if outcomes of H-bond local analysis are contrasted, our analysis significantly shows that inter-molecular H-bonds inside of (HNC)_n clusters are much stronger than the corresponding H-bonds in (HCN)_n with the same n. In comparing energy differences between these related clusters per monomer, [E_(HNC)n−E_(HCN)n]/n is found decreasing monotonically as n increases. All pieces of evidence from this theoretical prediction indicate that (HNC)_n with large n is probably constructed by its relative strong H-bonds.