The use of ESR spectroscopy for the investigation of dosimetric properties of egg shells

Electron spin resonance (ESR) spectroscopy was used to investigate the dosimetric properties of chicken egg shells. The ESR spectra of the irradiated egg shell were found to have an asymmetric absorption characterized by a major resonance at g=2.0019 and a minor resonance at g_||=1.9980. The study was carried out on g=2.0019 signal because of the accuracy of measurements and the possibility of using it as ESR dosimeter. The activation energy (E), frequency factor (k₀) and mean-life (τ) were calculated to be 1.50±0.10 eV, 2×10¹³ s⁻¹ and (4.4±0.4)×10⁴ year respectively. Dose–response was investigated between dose ranges of 1 Gy and 10 kGy for ⁶⁰Co γ-rays. Dose–response was found to be appropriate for dosimetry in the range 3 Gy to 10 kGy. The lower limit of observable doses for egg shell sample was about 3 Gy. The other ESR dosimetric parameters of egg shell samples, fading characteristic, light effect, dose-rate dependence and energy dependence, have also been studied in detail. Apart from its non-tissue equivalence, egg shell has very good dosimetric properties with insignificant fading, light independence, linearity in dose–response (3 Gy–10 kGy), dose-rate independence and independence from energy above 500 keV. It suggests that egg shell may be used as a retrospective γ radiation dosimetry after nuclear accidents or other short accidental radiation events.     

Effects of ionizing radiation on epoxy,graphite fiber,and epoxy/graphite fiber composites. Part II: Radical types and radical decay behavior

Electron spin resonance (ESR) investigations of line shapes and radical decay behavior have been made on an epoxy based on tetraglycidyl diaminodiphenyl methane (TGDDM)/diaminodiphenyl sulfone (DDS), T-300 graphite fiber, and T-300/5208 (graphite fiber/epoxy) composites after irradiation with Co₆₀ γ-radiation or 0.5 MeV electrons. Two kinetically distinct radical species are found in the irradiated epoxy as the temperature is raised beyond 120 K following irradiation of samples at 77 K with Co₆₀ γ. One has been termed a fast-decaying species and the other a slow-decaying species. The ratio of fast-decaying/slow-decaying radicals increases as the decay temperature rises. The fast-decaying radicals at room temperature are attributed largely to alkyl type radicals residing in regions of relatively low crosslink density, while the long-lived radicals are attributed to radicals residing in the highly crosslinked regions of the epoxy. A large concentration (ca. 10₂₀ to 10₂₁ spins/g) of unpaired electrons was found in unirradiated graphite fiber which masked the ESR spectral change in irradiated composites.     

Anomalous electric birefringence behavior of sonicated DNA fragments as observed in reversing-pulse transients and steady-state sign reversal: a multicomponent approach

Anomalous electric birefringence signals of a sonicated and column-fractionated medium-size calf thymus DNA sample (bp  =  570) in Na⁺ solutions were measured at 7 °C. The reversing-pulse electric birefringence (RPEB) signal pattern was theoretically calculated in the low electric field region for two axially symmetric models coexisting in equilibrium in solution. The RPEB theory is based on the electric dipole moment due to ion-fluctuation along the longitudinal direction and the electric polarizability anisotropy (Δ′), together with various electric and optical parameters assigned to the models. An analytical method was developed for the steady-state birefringence of the two-component system in a wide range of electric fields. The NaDNA samples exhibit complex RPEB patterns mixed with negative- and positive-going profiles. An experimental RPEB signal of NaDNA at an absorbance (A₂₆₀) of 8 was fitted to theoretical curve at weak electric fields. The anomalous RPEB signal was attributed to the component 2, which shows a dip in the buildup and another in the reverse processes with a positive sign and a larger relaxation time. For the component 1, a normal DNA profile with negative sign is associated with a narrow dip in the reverse and a faster relaxation time in the decay signal. The field-strength dependence of observed steady-state birefringence δ(∞) could be fitted for NaDNA at A₂₆₀  =  8 by the SUSID orientation function with saturated ionic and electronic moments. An apparent positive maximum and the sign reversal in δ(∞) at weak electric fields is an interplay between the positive component 2 with positive optical factor Δg and negative Δ′ and the negative component 1 with negative Δg and positive Δ′. Possible conformation of two DNA components involved in solution was estimated.     

Configurations of the free radicals in irradiated polypropylene and the relation of their decay reactions to the molecular motion

Free radicals produced in irradiated polypropylene were studied by the electron spin resonance method. Two temperature regions in which the free radicals decay rapidly were found at around 170°K. and 260°K. The first temperature region corresponds to the γ-dispersion of polypropylene and the second to the β-dispersion. Steric configurations of the free radicals were investigated, and it was concluded that the free radicals trapped in polymer, conformation of which is appreciably twisted from the stable 3₁-helical structure, decay with small-scale motion of the matrix polymer. The decay of free radicals trapped in polymer of less twisted conformation is associated with the large-scale motion of the matrix polymer. Activation energies of decay were found to be 11 kcal./mole at the lower temperature and 48 kcal./mole at the higher temperature. Time constants of the decay reactions were compared with those for molecular motion of the matrix, with results reflecting the relations of the decay of the polymer radicals to molecular motion in the matrix.     

ESR STUDY OF FREE RADICALS IN IRRADIATED POLYAMIDE-1010

Polyamide-1010 samples were irradiated in vacuum at room temperature by Cobalt-60 γ-rays. The free radicals formed in irradiation were studied by means of electron spin resonance (ESR)techniques.The ESRspectra consisted of a quartet and a superimposed singlet which were attributed to radical -CO-NH-CH-CH_2 and -CH_2-C=O, respectively. The effects of temperature and crystaUinity on the radicals were discussed and the mechanism for the production and decay of the radicals was also proposed.     

Thermal analysis study of 5,10,15,20-tetrakis (methoxyphenyl) porphyrins and their nickel complexes

The thermal stability in air of 5,10,15,20-tetrakis (4-methoxyphenyl) porphyrin (4-TMPP), 5,10,15,20-tetrakis (3-methoxyphenyl) porphyrin (3-TMPP), and their nickel metallo-complexes (4-TMPP-Ni and 3-TMPP-Ni) has been investigated by thermogravimetry (TG). 4-TMPP and 4-TMPP-Ni exhibit higher thermal stability compared to 3-TMPP and 3-TMPP-Ni. Nickel complexes exhibit a little higher thermal stability than the corresponding porphyrins. The thermal behavior including melting temperature and enthalpy of fusion was determined by differential scanning calorimetry (DSC) and infrared spectra (IR). The activation energies of thermal decompositions of 4-TMPP-Ni and 3-TMPP-Ni were obtained by integral model-free method; the mechanism functions and pre-exponential factors were determined by master plots method. The kinetic models follow the same mechanism function, Avramie-Erofeev equations with integral forms g() = [−ln (l − )]^0.278 and g() = [−ln (l − )]^0.260, respectively.     

'Genome order index' should not be used for defining compositional constraints in nucleotide sequences

A “genome order index,” defined as S = a² + c² + t² + g², where a, c, t, and g are the nucleotide frequencies of A, C, T, and G, respectively, was used to suggest that there exist genome-specific constraints on nucleotide composition. We show that the “evidence” for constraint, S < 1/3, is in fact a mathematical property that is always true regardless of data. Moreover, we show that S is strictly equivalent to and derivable from the Shannon H-function and has no advantage over it.     

An ESR protocol based on relaxation phenomena of irradiated Japanese pepper

We found various free radicals in a commercially available pepper in Japan before and after irradiation using electron spin resonance (ESR) spectroscopy. The typical ESR spectrum of the pepper consists of a sextet centered at g = 2.0, a singlet at the same g-value and a singlet at g = 4.0. Upon gamma ray irradiation, a new pair of signals appeared in the pepper. The progressive saturation behavior (PSB) at various microwave power levels indicated quite different relaxation behaviors of those radicals. Namely, the peak intensity of the organic free radical component decreases in a monotonic fashion, whereas the Mn2+ and Fe3+ ESR signals substantially keep constant. This reflects the evidence of three independent radicals in the pepper before irradiation. The PSB of the pair peaks as induced by irradiation possessed quite different PSB from that of the free radical located at g = 2.0. We proposed a new protocol for the ESR detection of irradiated foods by the PSB method at different microwave power levels. This would call for a major modification of the CEN protocol in European Union.     

Advanced protocol for the detection of irradiated food by electron spin resonance spectroscopy

Using ESR (electron spin resonance) spectroscopy, we found various free radicals in a pepper before and after irradiation. The representative ESR spectrum of the pepper composed of a sextet centered at g=2.0, a singlet at the same g-value and a singlet at g=4.0. This reflects the evidence of three independent radicals in the pepper before irradiation. Upon gamma ray irradiation, a new pair of signals appeared. The progressive saturation behavior (PSB) at various microwave power levels indicates quite different relaxation behaviors of those signals. For the evaluation of radiation-induced radicals and irradiation effects we propose a new protocol using the PSB method. This would call for an advanced protocol for the detection of irradiated foods.     

Freezing of water bound in lichen thallus as observed by H NMR. II. Freezing protection mechanisms in a cosmopolitan lichen Cladonia mitis and in Antarctic lichen species at different hydration levels

Proton NMR spectra at 300 MHz for dehydrated and hydrated thallus of Cladonia mitis Sandst. [=C. arbuscula (Wallr.) Flot ssp. Mitis (Sandst.) Ruoss], Himantormia lugubris (Hue) Lamb and Usnea aurantiaco-atra (Jacq.) Bory were recorded. The temperature was decreased from room temperature down to −45 °C. Pulse length was set to π/2=8.3 μs, which allowed the observation of tightly bound and loosely bound/or free water fraction, whereas the signal from solid matrix of thallus was reduced. In hydrated thallus a narrow Lorentzian line coming from loosely bound/free water fraction was recorded. For the temperature range between −5 and −20 °C a discontinuous increase in line halfwidths, accompanied by a decrease in area under the peak, was observed. This was attributed to the cooperative freezing of bulk water present in lichen thallus. In dehydrated thallus the NMR line consists of two components: a narrow, Lorentzian one (coming from loosely bound/free water fraction) and a broad line (from water tightly bound in lichen thallus). The overall area under peak remains unchanged down to −5 °C, and then between −5 and −20 °C it continuously decreases due to non-cooperative water immobilisation. As the temperature is decreased, for temperatures above −5 °C, the contribution made by the broad line component increases at the expense of the narrow line component. The mechanism of loosely-to-tightly bound water transfer is, at least partially, responsible for the freeze-protection of thallus in the lichen species investigated. No significant differences between the freeze protecting loosely-to-tightly bound water transfer mechanism of Antarctic lichens and that of cosmopolitan lichens was noticed.     

The application of different detection methods for irradiated dried anchovy and shrimp

Three different techniques, photostimulated luminescence (PSL), electron spin resonance (ESR) and thermoluminescence (TL) were applied for the detection of dried anchovy and shrimp exposed to electron beam at 0–10 kGy. PSL values for irradiated samples were more than 5000 photon counts/60 s, upper threshold (T₂), whereas those of non-irradiated samples were <700 counts (lower threshold, T₁) in anchovy and intermediate values of T₁–T₂ in shrimp. ESR measurements using both the whole samples did not show any signals specific to irradiation. However, in the case of anchovy it was possible to use bone for ESR detection, showing typical signals (g=2.002, 1.998). Minerals separated from both the samples for TL measurement showed that non-irradiated samples were characterised by glow curves situated at about 300°C with low intensity, while all irradiated samples showed glow peaked at about 200°C and its intensity was high enough to be discriminated from the non-irradiated ones. Furthermore, normalization by a re-irradiation enhanced the reliability of detection results of TL. In conclusion, a multi-step detection using different methods enhances confidence in the detection of irradiated food.     

Synthesis, chemical characterization and crystal structure of the (oxalato-O,O′)bis(1,10-phenanthroline)copper(II) pentahydrate

Violet single-crystals of the complex [Cu(ox)(phen)₂]·5H₂O (1), where ox²⁻ is oxalate and phen is 1,10-phenanthroline, were obtained by slow evaporation of a solution previously prepared by dissolving Cu(ox)·1/3H₂O in a water–acetonitrile solution of phenantroline. Its crystal structure consists of neutral mononuclear [Cu(ox)(phen)₂] units and crystallization water molecules which are held together by face-to-face stacking interactions between the phenantroline aromatic rings and an extensive three-dimensional network of O_w–HO/O_w hydrogen bonds. The copper atom is hexaco-ordinated to two oxygen atoms of a bidentate oxalato ligand and to four nitrogen atoms belonging to two phen ligands in a distorted octahedral cis arrangement. The e.p.r. Q-band spectrum of 1 shows an axial-type signal with g-tensor values of g=2.28 and g=2.06, which is consistent with the axially elongated octahedral geometry of the copper(II) chromophore found in the structural work. The relation gg>2.0 indicates a d(x²−y²) ground state. Variable temperature susceptibility measurements (5–300 K) reveals the occurrence of magnetically isolated paramagnetic centers in the crystal structure. Thermal degradation of the compound 1 under synthetic air atmosphere starts between 50 and 110°C with an endothermic process attributable to the release of the crystallization water molecules.     

EPR STUDY OF WOOL IRRADIATED WITH BLUE LIGHT

Abstract— Wool fibres were exposed to visible light in the blue range. The free radicals created by the illumination were studied using electron paramagnetic resonance. It is shown that by control of the light intensity and frequency it is possible to get considerable insight into the mechanism of the creation and the decay of the free radicals. The radical population under the above conditions appears to consist of an initial stable radical insensitive to radiation, and three other radicals, two of which follow decay kinetics considerably different from that of the remaining free radical. All the latter three radicals are probably caused by N–H or C–H bond scission.
The kinetics of radicals in irradiated proteins is discussed. It is shown that the mechanisms previously suggested in the literature are inadequate to account for the form of the experimental curve describing the number of radicals vs. time in irradiated protein. A new mechanism is suggested in which the decayed radicals form sites immune to further irradiation. Such a mechanism is shown to be consistent with the experimental curves. The kinetics of the decay of radicals after the cessation of illumination is examined in detail. It is found that in the case of irradiated keratin the mechanisms assuming first order decay are inconsistent with the experimental results, while the assumption of second order decay for two different species of radicals yields results consistent with the experimental evidence.     

Femtosecond transient absorption with chirped pump and supercontinuum probe: Perturbative calculation of transient spectra with general lineshape functions, and simplifications

Femtosecond transient UV/vis absorption spectra of molecules in solution show vibronic structure initially while pump and probe pulses overlap, superimposed on bands which broaden and shift on several time scales. Third-order perturbation theory is used simulate and understand such spectra under experimental conditions, i.e., with chirped pump pulses and 40–80 fs pump/probe correlation time. The electronic system is coupled to a solvent bath whose fluctuations enter through a lineshape function g(t). This approach has two advantages. (i) In the general case when g(t) is modelled realistically it provides a distinction of coherent and sequential contributions to early transient spectra. The time-zero stimulated emission band can be extracted, giving access to the relaxation function for the emission frequency. (ii) For limiting forms of g(t) corresponding to the Bloch approximation and to inhomogeneous broadening the threefold time integrals underlying the theory reduce to a single integral. In such cases the lineshape formulation of transient absorption spectra can be used for data fitting.     

ESR detection of wheat flour before and after irradiation

We revealed free radicals in wheat flour before and after gamma-ray irradiation and their thermal behavior during heat-treatment using electron spin resonance (ESR) spectroscopy. The ESR spectrum of wheat flour before irradiation consists of a sextet centered at g = 2.0 and a singlet signal at the same g-value position. The first one is attributable to a signal with hyperfine (hf) interactions of Mn2+ ion (hf constant: 7.4 mT). The second is originated from carbon-centered radical. Upon gamma-ray irradiation, however, a new signal with two triplet lines at the low and high field ends was detected in wheat flour on top of the Mn2+ sextet lines. We analyzed the triplet ESR lines as powder spectra (rhombic g-tensor symmetry) with nitrogen (14N) hyperfine interactions. This indicates that a new organic radical was induced in the conjugated protein portion of wheat flour by the gamma-ray irradiation. Intensity of the organic free radical at g = 2.0 detected in irradiated wheat flour increased monotonically by the thermal treatment. The analysis of the time-dependent evolution and decay process based on the theory of transient phenomena as well as the nonlinear least-squares numerical method provided a unique time constant for the radical evolution and decay in wheat flour during the heat-treatment.     

Temperature dependence of the rate constant for reactions of hydrated electrons with H, OH and H2O2

The temperature dependence of the rate constants, for the reactions of hydrated electrons with H atoms, OH radicals and H₂O₂ has been determined. The reaction with H atoms, studied in the temperature range 20–250°C gives k(20°C) = 2.4 × 10¹⁰M^-1s¹ and the activation energy E_A = 14.0 kJ mol^-1 (3.3 kcal mol^-1). For reaction with OH radicals the corresponding values are, k(20°C) = 3.1 × 10¹⁰M^-1s^-1 and E_A = 14.7 kJ mol^-1 (3.5 kcal mol^-1) determined in the temperature range 5–175°C. For reaction with H₂O₂ the values are, k(20°C) = 1.2 × 10¹⁰M^-1s^-1 and E_A = 15.6 kJ mol^-1 (3.7 kcal mol^-1) measured from 5–150°C. Thus, the activation energy for all three fast reactions is close to that expected for diffusion controlled reactions. As phosphates were used as buffer system, the rate constant and activation energy for the reaction of hydrated electron with H₂PO₄^- was determined to k(20°C) = 1.5 × 10⁷M^-1s^-1 and E_A = 7.4 kJ mol^-1 (1.8 kcal mol^-1) in the temperature range 20–200°C.     

γ射线辐射医用级超高分子量聚乙烯自由基的演变

采用γ射线对医用级超高分子量聚乙烯(UHMWPE)进行辐照处理, 利用电子自旋共振波谱仪(ESR)研究了辐照诱导自由基的种类及其在氩气和不同氧分压下的衰减行为. 在氩气中, 辐射诱导UHMWPE主要产生烷基自由基和烯丙基自由基, 总的辐射化学产额约为0.48/100 eV. 室温下烷基自由基的稳定性差, 其寿命仅有 1 d左右. 在含氧气氛中, 自由基主要通过氧化反应而衰减, 其衰减速率随氧分压的增加而增加, 半衰期则由1×10⁵ Pa氩气中的224.0 h降至5×10⁵ Pa O₂气中的1.8 h. 根据此结果推算, 室温下陷落在晶区的自由基迁移至微晶表面的速率非常快, 仅需小时量级.     

Relation of the decay of free radicals in irradiated polyethylene to the molecular motion of the polymer and the configurations of the free radicals

Decay reactions of the free radicals produced in irradiated polyethylene (high-density and low-density materials) were examined in connection with the molecular motion of the matrix polymer. Three temperature regions, in which the free radicals decay very rapidly, at around 120, 200, and 250°K, were designated T_A, T_L, and T_B, respectively. The decay of the free radicals at these temperatures had activation energies in high-density polyethylene of 0.4 kcal/mole for T_A, 9.4 kcal/mole for T_L, and 18.4 kcal/mole for T_B. In low-density polyethylene these quantities were 0.7 kcal/mole for T_A, 23.1 kcal/mole for T_L, and 24.8 kcal/mole for T_B. Comparison of time constants for the decay reactions and for molecular motion of the matrix polymer indicate that the decay in T_A and T_B is closely related to molecular motion in the amorphous regions of the polymer. The decay of the free radicals at T_L in high-density polyethylene is due to molecular motion associated with local mode relaxation at lamellar surfaces, while that of low-density polyethylene is due to local mode relaxation in the completely amorphous region. Steric configurations of the free radicals which decay in the respective temperature regions were also investigated.     

Rotational isomerism about acyl–oxygen bond in two envelope conformations and vibrational spectral analysis of cyclopentyl acetate—a combined theoretical and experimental study

The s-cis and s-trans isomers resulting from the rotation about the acyl–oxygen bond of two envelope conformations with C5 (neighbour to substituted carbon C4) and C4 as apical atoms in the five-membered ring and vibrational spectra of cyclopentyl acetate are studied with density functional molecular orbital theory at the B3LYP/6-311++G** level. In the case of C5 at the flap and –OAc group in the axial position, it is found that the s-cis isomer (1:s-cis) is more stable than the s-trans isomer (1:s-trans) by 7.46 kcal/mol. The s-cis–s-trans rotational barrier is 15 kcal/mol. The other two conformers with C4 at the flap and –OAc group in the equatorial position, the relative energies of the s-cis and s-trans isomers (2:s-cis and 2:s-trans) with respect to 1:s-cis are found to be 0.45 and 8.21 kcal/mol, respectively. The infrared spectra (200–3200 cm⁻¹) in gas and liquid phase and Raman spectra (3200–150 cm⁻¹) in liquid phase for cyclopentyl acetate and 10 of its isotopomers are recorded. The calculated spectra of all conformers along with the observed spectra has helped study the effect of rotational isomerism on the vibrational spectra. The normal coordinate analysis in terms of non-redundant local coordinates is done for vibrational assignments of the 57 normal modes. The experimental and theoretical results are compared to the corresponding quantities of some similar molecules.     

Solution structure, mutagenesis, and NH exchange studies of the MutT enzyme–Mg-8-oxo-dGMP complex

The MutT pyrophosphohydrolase from E. coli (129 residues) catalyzes the hydrolysis of nucleoside triphosphates (NTP), including 8-oxo-dGTP, by substitution at Pβ, to yield NMP and pyrophosphate. The product, 8-oxo-dGMP is an unusually tight binding, slowly exchanging inhibitor with a K_D=52 nM, (ΔG°=−9.8 kcal/mol) which is 6.1 kcal/mol tighter than the binding of dGMP (ΔG°=−3.7 kcal/mol). The higher affinity for 8-oxo-dGMP results from a more favorable ΔH_binding (−32 kcal/mol) despite an unfavorable −TΔS°_binding (+22 kcal/mol). The solution structure of the MutT–Mg²⁺-8-oxo-dGMP complex shows a narrowed, hydrophobic nucleotide-binding cleft with Asn-119 and Arg-78 among the few polar residues. The N119A, N119D, R78K and R78A single mutations, and the R78K+N119A double mutant all showed largely intact active sites, on the basis of small changes in the kinetic parameters of dGTP hydrolysis and in ¹H–¹⁵N HSQC spectra. However, the N119A mutation profoundly weakened the active site binding of 8-oxo-dGMP by 4.3 kcal/mol (1650-fold). The N119D mutation also weakened 8-oxo-dGMP binding but only by 2.1 kcal/mol (37-fold), suggesting that Asn-119 functioned both as a hydrogen bond donor to C8=O, and a hydrogen bond acceptor from N7H of 8-oxo-dGMP, while aspartate at position −119 functioned as an acceptor of a single hydrogen bond. Much smaller weakening effects (0.3–0.4 kcal/mol) on the binding of dGMP and dAMP were found, indicating specific hydrogen bonding of Asn-119 to 8-oxo-dGMP. While formation of the wild type MutT–Mg²⁺-8-oxo-dGMP complex slowed the backbone NH exchange rates of 45 residues distributed throughout the protein, the same complex of the N119A mutant slowed the exchange rates of only 11 residues at or near the active site, indicating an increase in conformational flexibility of the N119A mutant. The R78K and R78A mutations weakened the binding of 8-oxo-dGMP by 1.7 and 1.1 kcal/mol, respectively, indicating a lesser role of Arg-78 than of Asn-119 in the selective binding of 8-oxo-dGMP, likely donating a single hydrogen bond to its C6=O. The R78K+N119A double mutant weakened the binding of 8-oxo-dGMP (K_I^slope=3.1 mM) by 6.5±0.2 kcal/mol which overlaps, within error with the sum of the effects of the two single mutants (6.0±0.3 kcal/mol). Such additive effects of the two single mutants in the double mutant are most simply explained by the independent functioning of Asn-119 and Arg-78 in the binding of 8-oxo-dGMP. Independent functioning of these two residues in nucleotide binding is consistent with their locations in the MutT–Mg²⁺-8-oxo-dGMP complex, on opposite sides of the active site cleft, with a distance of 8.4±0.5 Å between their side chain nitrogens.