Keen competition between electrostatic and argentophilic interactions in the formation and behavior of molecular rings

The macrocyclic structures and behavior on the reaction of AgX (X = NO₃ and CF₃SO₃) with bis(nicotinoyl)-4,4′-(9-fluorenylidene)diphenolates (L) have been carried out. Discrete oblong rings and linked rings were constructed via the keen competition between the inter-ring argentophilic (Ag···Ag) interaction and the electrostatic interaction between Ag(I) and its anion, and the interconversion of the two species was attempted by means of anion exchange.     

PLIMSTEX: a novel mass spectrometric method for the quantification of protein–ligand interactions in solution

Protein–ligand interactions by mass spectrometry, titration, and H/D exchange (PLIMSTEX) is a new mass spectrometric method for determining association constants and binding stoichiometry for interactions of proteins with various ligands, as well as for quantifying the conformational changes associated with ligand binding to proteins. The association constants determined with PLIMSTEX agree with literature values within a factor of six, establishing its validity for protein interactions involving metal ions, small organic molecules, peptides, and proteins. PLIMSTEX provides solution, not gas-phase, properties by taking advantage of ESI and MALDI mass spectrometry to measure accurately the mass of a protein as it undergoes amide H/D exchange. The approach sidesteps the problem of relating gas-phase abundances of the protein or protein–ligand complex ions to their solution concentrations. With on-column concentration and desalting, high picomole quantities of proteins are sufficient for reproducible mass detection, and the concentration of the protein can be as low as 10⁻⁸ M. It is amenable to different protein/ligand systems in physiologically relevant media. No specially labeled protein or ligand is needed. PLIMSTEX offers minimal perturbation of the binding equilibrium because it uses no denaturants, no additional spectroscopy or reaction probes, and no physical separation of ligand and protein during binding.     

Principles of electrostatic interactions and self-assembly in lipid/peptide/DNA systems: Applications to gene delivery

Recently, great progress has been achieved in development of a wide variety of formulations for gene delivery in vitro and in vivo, which include lipids, peptides and DNA (LPD). Additionally, application of natural histone–DNA complexes (chromatin) in combination with transfection lipids has been suggested as a potential route for gene delivery (chromofection). However, the thermodynamic mechanisms responsible for formation of the ternary lipid–peptide–DNA supramolecular structures have rarely been analyzed. Using recent experimental studies on LPD complexes (including mixtures of chromatin with cationic lipids) and general polyelectrolyte theory, we review and analyze the major determinants defining the internal structure, particle composition and size, surface charge and ultimately, transfection properties of the LPD formulations.     

Self-consistent reaction field calculation of solvent reorganization energy in electron transfer: a dipole-reaction field interaction model

Based on the continuum dielectric model, this work has established the relationship between the solvent reorganization energy of electron transfer (ET) and the equilibrium solvation free energy. The dipole-reaction field interaction model has been proposed to describe the electrostatic solute-solvent interaction. The self-consistent reaction field (SCRF) approach has been applied to the calculation of the solvent reorganization energy in self-exchange reactions. A series of redox couples, O₂/O⁻ ₂, NO/NO⁺, O₃/O⁻ ₃, N₃/N⁻ ₃, NO₂/NO⁺ ₂, CO₂/CO⁻ ₂, SO₂/SO⁻ ₂, and ClO₂/ClO⁻ ₂, as well as (CH₂)₂C-(-CH₂-) _n -C(CH₂)₂ (n=1 ∼ 3) model systems have been investigated using ab initio calculation. For these ET systems, solvent reorganization energies have been estimated. Comparisons between our single-sphere approximation and the Marcus two-sphere model have also been made. For the inner reorganization energies of inorganic redox couples, errors are found not larger than 15% when comparing our SCRF results with those obtained from the experimental estimation. While for the (CH₂)₂C–(–CH₂–) _n –C(CH₂)₂ (n=1 ∼ 3) systems, the results reveal that the solvent reorganization energy strongly depends on the bridge length due to the variation of the dipole moment of the ionic solute, and that solvent reorganization energies for different systems lead to slightly different two-sphere radii. Received: 19 April 2000 / Accepted: 6 July 2000 / Published online: 27 September 2000     

Theoretical study on the interactions of halogen‐bonds and pnicogen‐bonds in phosphine derivatives with Br2, BrCl,and BrF

The MP2 ab initio quantum chemistry methods were utilized to study the halogen‐bond and pnicogen‐bond system formed between PH₂X (X = Br, CH₃, OH, CN, NO₂, CF₃) and BrY (Y = Br, Cl, F). Calculated results show that all substituent can form halogen‐bond complexes while part substituent can form pnicogen‐bond complexes. Traditional, chlorine‐shared and ion‐pair halogen‐bonds complexes have been found with the different substituent X and Y. The halogen‐bonds are stronger than the related pnicogen‐bonds. For halogen‐bonds, strongly electronegative substituents which are connected to the Lewis acid can strengthen the bonds and significantly influenced the structures and properties of the compounds. In contrast, the substituents which connected to the Lewis bases can produce opposite effects. The interaction energies of halogen‐bonds are 2.56 to 32.06 kcal·mol^?1; The strongest halogen‐bond was found in the complex of PH₂OH???BrF. The interaction energies of pnicogen‐bonds are in the range 1.20 to 2.28 kcal·mol^?1; the strongest pnicogen‐bond was found in PH₂Br???Br₂ complex. The charge transfer of lp(P) ? σ*(Br? Y), lp(F) ? σ*(Br? P), and lp(Br) ? σ*(X? P) play important roles in the formation of the halogen‐bonds and pnicogen‐bonds, which lead to polarization of the monomers. The polarization caused by the halogen‐bond is more obvious than that by the pnicogen‐bond, resulting in that some halogen‐bonds having little covalent character. The symmetry adapted perturbation theory (SAPT) energy decomposition analysis showes that the halogen‐bond and pnicogen‐bond interactions are predominantly electrostatic and dispersion, respectively.     

Organic chlorine as a hydrogen-bridge acceptor: evidence for the existence of intramolecular O--H...Cl--C interactions in some gem-alkynols

The acceptor capabilities of "organic" halogen, CX (X=F, Cl, Br, I), with respect to hydrogen bonding are controversial, and unactivated organic chlorine is generally deemed to be a poor acceptor. Hydrogen bridges of the type O--H...Cl--C are uncommon and occur mainly in an intramolecular situation when the donor group is sterically hindered, so that the formation of intermolecular interactions is difficult. In this paper, intramolecular O--H...Cl--C interactions in a series of chloro-substituted gem-alkynols are studied. We describe various features of this interaction using crystallographic, spectroscopic and computational methods. The O--H...Cl--C interaction occurs in five of the six compounds under consideration here (CDDA, 14DDDA, 15DDDA, 18DDDA, 15MKA). Solution (1)H NMR spectroscopy shows that the interaction is intramolecular and that it is a true hydrogen bond. DFT calculations give a stabilisation energy around 4.0 kcal mol(-1). In the crystal structures of the compounds studied, the intramolecular O--H...Cl--C interactions fit into the overall scheme of cooperative interactions. These structures may be derived from that of the unsubstituted compound DDA by means of synthon exchange and the O--H...Cl--C interaction fares surprisingly well in the presence of competing stronger acceptors. The crystal structures show an unusual degree of modularity for compounds that generally form interactions that are weak and variable. It is noteworthy that the so-called "weak" acceptor, organic chlorine, is able to sustain a good intramolecular hydrogen bridge that is of an attractive and stabilizing nature and which is of potential importance in crystal engineering and supramolecular chemistry.     

Viscosity of sodium carboxymethylcellulose in ethylene glycol–water mixed solvent media: Separation of the influences of polyion conformation and electrostatic interactions on the reduced viscosity

Precise measurements on the viscosities of the solutions of sodium carboxymethylcellulose in water and three ethylene glycol–water mixtures containing 10, 20, and 30 mass % of ethylene glycol have been reported at 35 °C. Isoionic dilutions were performed at total ionic strengths in the range of 0.0002–0.0008 eqv L^?1 using sodium chloride to obtain the intrinsic viscosities along with the Huggins constants. The influence of the medium and the ionic strength on the intrinsic viscosities have been interpreted from the points of view of the counterion condensation and expansion/contraction of the polyion chains in solution. The variations of Huggins constants, on the other hand, provided information on the intermolecular interactions in these solutions. A convenient method has been proposed to decompose the reduced viscosity of a polyelectrolyte solution into its conformational and electrostatic components. The electrostatic reduced viscosities obtained in the present study, purely from experimental considerations, quantitatively corroborates the conclusions derived from the Huggins constants. Using the Hess and Klein theoretical approach, an expression for the reduced viscosity due to the electrostatic interactions as a function of polyelectrolyte concentration could be obtained and the reported experimental electrostatic contributions could be nicely described with the help of this approach. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 1196–1202, 2010     

The multieffects of DMF and DBU on the [5 + 1] benzannulation of nitroethane and α‐alkenoyl ketene‐(S,S)‐acetals: Hydrogen bonding and electrostatic interactions

A density functional theory (DFT) study was performed to elucidate the mechanism for the [5 + 1] benzannulation of nitroethane and α‐alkenoyl ketene‐(S,S)‐acetals. The calculation results are consistent with experimental findings, showing that the reaction proceeds via deprotonation of nitroethane, nucleophilic addition, intramolecular cyclization, elimination of HNO₂, and the keto‐enol tautomerization sequence. It was disclosed that N,N‐dimethylformamide (DMF) and 1,8‐diazabicyclo[5.4.0]undec‐7‐ene (DBU) act as not only solvent and nonnucleophilic base, respectively, but also catalysts in the reaction by stabilizing the transition states (TSs) and intermediates via intermolecular hydrogen bonds and electrostatic interactions. Besides, the effective orbital interaction of the reaction site in TS also contributes to the intramolecular cyclization step. The new mechanistic insights obtained by DFT calculations highlight that the hydrogen bonds and electrostatic interactions are key factors for the [5 + 1] benzannulation of nitroethane and α‐alkenoyl ketene‐(S,S)‐acetals. © 2015 Wiley Periodicals, Inc.     

The influence of spatial limits on the modeling chemical reactivity: The example of CO2 hydration in MeX zeolites (Me = K,Rb, Cs)

Zeolite cell size variations upon cationic exchange are frequently disregarded while calculating chemical reactions with rather bulky reagents. An example of the reaction between the small reagents (H₂O and CO₂) illustrates a necessity to check this assumption for faujasite (FAU) zeolites with large porous space. The interplay of the space for the reaction center and the mobility of alkali cations forces lattice parameters to play a crucial role for the accurate computation of activation barrier of CO₂ hydration. While the CO₂ hydration is modeled in the MeX forms (Me = Rb, or Cs) with a fixed volume of NaX one, barrierless reactions were predicted that is not confirmed by experimental data. When the RbX and CsX cell parameters were optimized with Vienna Ab-initio Simulation Package (VASP), activation energies were obtained in agreement with the experimental data that CO₂ hydration in CsX occurs at room temperature.     

Astragalin identification in graviola pericarp indicates a possible participation in the anticancer activity of pericarp crude extracts: In vitro and in silico approaches

Graviola, soursop, or guanabana (Annona muricata L.), is an ethnomedical fruit consumed to alleviate headache, diarrhea, diabetes, and cancer. Pericarp is the inedible part of graviola least studied in comparison to seeds and leaves, even thought, it contains the highest concentration of graviola total polyphenols. Anticancer effect of graviola pericarp has been demonstrated in crude extracts attributing the effect to acetogenins, however, crude extracts contain several active molecules. Thus, the present work aimed to fractionate and purify an ethanolic crude extract from graviola pericarp. Purified graviola pericarp fraction (PGPF) was evaluated on cancerous and non-cancerous cell lines, and then was identified by NMR, TOF-MS, and HPLC. Finally, an in silico analysis was performed to predict targets cancer-related of the molecule detected. Our results revealed IC₅₀ values for cervix adenocarcinoma (HeLa), hepatocellular carcinoma (HepG2), triple-negative breast cancer (MDA-MB-231), and non-cancerous cell line (HaCaT) of 92.85 ± 1.23, 81.70 ± 1.09, 84.28 ± 1.08, and 170.2 ± 1.12 µg PGPF/mL, respectively. In vitro therapeutic indexes estimated as quantitative relationship between safety and efficacy of PGPF were 1.83, 2.08, and 2.02 for HeLa, HepG2, and MDA-MB-231, respectively. The NMR analysis revealed astragalin (kaempferol-3-O-glucoside) in PGPF, a flavonoid not reported in graviola pericarp until now. Astragalin identity was confirmed by TOF-MS and HPLC. In silico results support previous reports about astragalin modulating proteins such as Bcl-2, CDK2, CDK4, MAPK and RAF1. Also, results suggest that astragalin may interact with other cancer-related proteins not associated previously with astragalin. In conclusion, astragalin may be contributing to the anticancer effect observed in graviola pericarp extracts.