A theoretical study of malonate and formate calcium binding by ab initio techniques

Ab initio calculations at the STO—3G level have been performed on the binding of CA(II) ion to malonate and formate with and without d orbitals in the basis set for the CA(II) ion. The malonate and formate binding results with CA(II) are similar. The addition of d orbitals to CA(II) has little effect on the conformational minimum. The results are qualitatively similar to those from our previous calculations on the Mg²⁺—malonate interaction: a single carboxyl interaction with the metal ion appears to be preferred over a conformation in which two carboxyl groups bind to Ca(II). Moreover, the single carboxyl group interaction with CA(II) appears to be favored over the binding of CA(II) to a single oxygen of a carboxyl group.     

An ab initio SCF study of the rotational isomerism in ethyl formate and propargyl formate

SCF computations using STO/3G orbitals have been made for methyl formate, ethyl formate and propargyl formate in order to investigate rotational isomerism in the last two molecules. The results are in good agreement with those of IR and microwave studies.     

An ab initio study of halogen—olefin molecular complexes

A systematic computational study, using the 3–21G basis set, of the F₂/CH₂H₄ system shows that several molecular complex configurations can exist and that the axial-perpendicular type is not the most stable. Full geometry optimization results for F₂/C₂H₄ and Cl₂/C₂H₄ in axial-perpendicular configurations are reported and shown to be improvements over previous calculations.     

An ab initio investigation of zinc chloro complexes

A series of geometry, frequency, and energy calculations of chloroaquazinc(II) complexes were carried out at up to the MP2/6-31+G* level. A thorough examination of all species up to and including hexacoordinate species, and with up to six chlorides, was carried out. The structures of the complexes are compared with experimental data where available. The solution chemistry of zinc(II) in the presence of chloride is discussed, and Raman spectra of zinc perchlorate with increasing amount of chloride are presented.     

An ab initio study of the stability and electronic structure of univalent magnesium salts

Large basis and well-correlated ab initio electronic structure calculations have been performed on the simple Mg(I) salts, Mg₂F₂ and Mg₂Cl₂. The electron withdrawing power of the halogens gives rise to significant metal-metal bonding and consequently these as yet unobserved, univalent salts are calculated to be 10–12 kcal more stable than if the second magnesium atom were absent from the molecule. With this stability, these species provide an energetically more accessible Mg atom for subsequent reaction than does solid magnesium where the atomization energy is 35 kcal. Thus, formal univalency of magnesium affords a route to activated magnesium.     

An ab initio study of formamide

Calculated energy and molecular properties of the ground and low-energy excited states of formamide are presented at the ground state geometry. Satisfactory results are obtained except for the ¹* energy which remains too high by 1 eV (which is nevertheless a large improvement over previous calculations). The predicted triplet energies lie at 5.4 eV (³ n*) and 5.8 eV (³*).     

An ab initio study of ascorbic acid

The conformations of ascorbic acid and its singly ionized analog are found to agree with the X-ray structures. The calculations are discussed in terms of the known chemistry of ascorbic acid and its metabolites.     

An ab initio study of pyruvic acid

The geometries and vibrational frequencies of two conformers of pyruvic acid have been obtained at the ab initio second order Möller-Plesset level of theory using the 6-311++G^** basis set. While the calculated geometries have been compared to the experimental microwave data, the vibrational frequencies have been assigned, using the experimental gas phase IR spectra of 13 isotopes of pyruvic acid by a recently developed scaling procedure (IRPROG). An attempt has been made to explain the stability of the eclipsed conformation over the staggered conformation of pyruvic acid by taking account of the molecular orbitals.     

A comparative ab initio study of methyl formate, methyl thiolformate and methyl thionoformate

Ab initio SCF-MO calculations have been carried out for HCOOCH₃, HC(=O)SCH₃ and HC(=S)OCH₃. Relative stabilities of s-trans/s-cis conformers are reported and discussed in terms of specific intramolecular interactions. The energy difference between the s-trans and the s-cis form increases in the order methyl thiolformate < methyl thionoformate < methyl formate. The major stabilizing factors of the s-cis forms are the bond dipolar interaction and the mesomeric delocalization through the five member ring involving both the X=C---Y---C (X, Y = O, S) skeleton and the out-of-plane hydrogen atoms. These effects are used to explain the trends mentioned. The non-planarity previously proposed for the thionoester is reinvestigated. Our calculations show that this molecule is planar. Molecular atomic charges, dipole moments and ionisation potentials are determined and compared with available experimental values.     

Possible gas-phase ion pairs in amine-HCl complexes. An ab initio theoretical study

Ab initio MO calculations were performed for complexes between HCl and NH₃, CH₃NH₂, (CH₃)₂NH and (CH₃) ₃N. SCF geometry optimization for the latter three complexes gives double-minimum potential surfaces, which become single- minimum surfaces when electron correlation is considered. It is proposed that (CH₃)₃NHCl may be an ion pair in the gas phase.     

A theoretical study of malonate ion and its metal binding by ab initio and semiempirical techniques

STO-3G and CNDO calculations have been performed on malonate ion and its Mg²⁺ complexes. The parallel carboxyl group arrangement is found to be the single minimum energy conformation with both techniques. In the metal binding studies, the binding of a Mg²⁺ to a single carboxyl is preferred over binding symmetrically to both carboxyls in their parallel conformation. These results are consistent with X-ray structure results on calcium malonate.     

The stability and nature of an SiC double bond. An ab initio mo study for 1,1-dimethylsilaethylene

Several properties of Me₂SiCH₂(I) are calculated for the first time using the ab initio MO method. (I) is found to be substantially more stable than the isomers MeS?iCH₂Me(II) and Me₂HSiC?H(III), in contrast to the case of the parent compound (H₂SiCH₂). The geometry and vibrational frequencies are predicted.     

An ab initio study of electrophilic aromatic substitution

Proton affinities are calculated at all reactive positions for the normal benzenoid hydrocarbons, benzene, naphthalene, phenanthrene and anthracene, a strained benzenoid hydrocarbon, biphenylene, and a nonalternant hydrocarbon, fluoranthene, and the results are compared to experimental protodetritiation rates. Methods used include PM3 and Hartree-Fock calculations at the STO-3G, 3-21G*, 6-31G* and MP2//6-31G* levels. Generally good agreement is found between theory and experiment with 6-31G* giving the best correlations. Received: 11 June 1998 / Accepted: 3 September 1998 / Published online: 23 February 1999     

An ab initio and cryospectroscopic study of the hydrogen chloride and boron trifluoride complexes of cyclopropene

Mid-infrared spectra of cyclopropene (c-C3H4) mixtures with HCl or BF3, dissolved in liquefied argon and in liquefied nitrogen have been examined. Evidence was found for the formation of two different isomers of the 1:1 complexes: a pi-type complex in which the interaction occurs with the pi-bond of cyclopropene, and a sigma-type complex in which the electron acceptors interact with one of the CC single bonds. At lower temperatures, indications for the formation of a 1:2 chain-type complex were found. Using spectra recorded between 90 and 124 K in liquid argon, the complexation enthalpies for the pi- and sigma-complexes with HCl were determined to be -8.8(3) and -7.9(3) kJ mol-1, respectively. For the pi-complex with BF3 a value of -7.4(3)kJ mol-1 was found. Structural and spectral information on the 1:1 complexes was obtained from B3LYP/6-311++G(d,p) and MP2(FC)/6-31+G(d) calculations. Using Free Energy Perturbation Monte Carlo simulations to calculate the solvent influences, and statistical thermodynamics to account for zero-point vibrational and thermal contributions, the solution enthalpies were transformed into complexation energies with values of -15.5(6) and -13.8(8) kJ mol-1 for the pi- and sigma-isomers of c-C3H4.HCl, respectively, and of -12.7(8) kJ mol-1 for the pi-type BF3 complex.     

An ab initio study of the hydrated positron

Ab initio calculations are presented for the hydration energy of the positron. Tetrahedral molecular-dipole-oriented clusters e⁺(H₂O)₄ are considered. In performing these calculations, the Hartree—Fock MO LCAO SCF approximation with the 4-31G split-valence basis set is used. The method was modified to treat the positron problem. It is shown that e⁺ in liquid water, like an electron, can be strongly solvated, with the hydration energy 0.2–0.3 eV greater than that of e⁺.     

An ab initio study of the keto-enol tautomerism

The keto-enol tautomerism is studied using an approximative HF method outlined in the appendix. The following results are obtained: (1) The experimentally observed alternance of G in acyclic monoketones could not be reproduced. (2) The stabilization of C=C double bonds, especially of conjugated double bonds, by CH₃- or -CH₂- groups is responsible for the observed difference between acyclic and cyclic 1.2-diketones, e.g. for the different enol content of diacetyl and cyclopentane-1.2-dione. (3) The enols of 1.2-diketones contain a hydrogen bond which differs from the hydrogen bond in enols of 1.3-diketones. (4) A system of two conjugated C=O double bonds is not favoured compared to a system of two C=O bonds which are separated by one (or more) -CH₂- group. (5) 5-ring enols with a C=C double bond in the ring are more stable than one would expect by an energy estimation from acyclic compounds.     

Genistein complexes with amines. Part II: ab initio study of the complexes with piperazine and triethylamine

The piperazine and triethylamine complexes of genistein, exhibiting high immunosuppressant activity, were ab initio modeled at RHF/6-31G^** level and results were compared with those obtained for genistein–morpholine complexes by X-ray, NMR, and theoretical methods. The most stable genistein–piperazine complex is formed due to hydrogen bonding of genistein's OH group at position C7 to piperazine's nitrogen atom. In the most stable genistein–triethylamine complex genistein's OH group at position C4′ (position para to phenyl substituent) and trimethylamine nitrogen atom are engaged in hydrogen bond formation. The calculations confirmed our previous NMR conclusion that piperazine is more strongly complexed by genistein than is morpholine or triethylamine. The theoretical ¹³C NMR spectra correlate fairly well with the experimental spectra.     

An ab initio SCF and CI study of ketene imine

The electronic structures of the ground and excited states of ketene imine (_H^HCCNH) have been studied by ab initio SCF and CI calculations. The nucleophilic nature of the β carbon with respect to nitrogen has been discussed using calculated electrostatic potentials and by calculated energy differences between the parent and protonated species. The electronically excited ¹A″ and ³A″ states are found to be almost degenerate.     

An ab initio study of ionic liquid silver complexes as carriers in facilitated olefin transport membranes

Liquid phase isoprene/n-pentane mixtures can be separated through the use of facilitated transport membranes containing complexes of silver ions with an ionic liquid (IL). 1-Butyl-3-methyl imidazolium tetrafluoroborate and zwitterion-type imidazolium compounds containing covalently-bound sulfonate groups form complexes with AgX (X = BF₄, NO₃, and ClO₄). Facilitated isoprene transport has been observed with selectivities that depend on the counteranion of the silver salt. The facilitated transport phenomena of the olefin and IL/silver complexes were investigated theoretically by calculating their complexation energies (i.e., the energy of formation of the silver complexes with the olefin) with the density functional theory method. Among polymer/silver salt systems, the polymer/AgBF₄ system has been found to be generally more favorable for facilitated olefin transport than the polymer/AgNO₃ system because of the low lattice energy of AgBF₄. However, there is a different trend for IL/AgX systems. This difference may arise because the positively charged components of the IL can interact with the anions of the silver salt, which changes the olefin complexation activity. For IL/AgX systems, the selectivity varies inversely with the complexation energy, which implies that the diffusion of the carrier may be the significant factor affecting isoprene/n-pentane separation, once the appropriate complexation has occurred between olefin molecules and the ILsilver complexes.