Assignment of the lowest Qy-state and spectral dynamics of the CP29 chlorophyll a/b antenna complex of green plants: a hole-burning study

Low-temperature absorption, fluorescence and persistent non-photochemical hole-burned spectra are reported for the CP29 chlorophyll (Chl) a/b antenna complex of photosystem II of green plants. The absorption-origin band of the lowest Qy-state lies at 678.2 nm and carries a width of approximately 130 cm-1 that is dominated by inhomogeneous broadening at low temperatures. Its absorption intensity is equivalent to that of one of the six Chl a molecules of CP29. The absence of a significant satellite hole structure produced by hole burning, within the absorption band of the lowest state, indicates that the associated Chl a molecule is weakly coupled to the other Chl and, therefore, that the lowest-energy state is highly localized on a single Chl a molecule. The electron-phonon coupling of the 678.2 nm state is weak with a Huang-Rhys factor S of 0.5 and a peak phonon frequency (omega m) of approximately 20 cm-1. These values give a Stokes shift (2S omega m) in good agreement with the measured positions of the absorption band at 678.2 nm and a fluorescence-origin band at 679.1 nm. Zero-phonon holes associated with the lowest state have a width of approximately 0.05 cm-1 at 4.2 K, corresponding to a total effective dephasing time of approximately 400 ps. The temperature dependence of the zero-phonon holewidth indicates that this time constant is dominated at temperatures below 8 K by pure dephasing/spectral diffusion due to coupling of the optical transition to the glass-like two-level systems of the protein. Zero-phonon hole-widths obtained for the Chl b bands at 638.5 and 650.0 nm, at 4.2 K, lead to lower limits of 900 +/- 150 fs and 4.2 +/- 0.3 ps, respectively, for the Chl b-->Chl a energy-transfer times. Downward energy transfer from the Chl a state(s) at 665.0 nm occurs in 5.3 +/- 0.6 ps at 4.2 K.     

Effects of acid and alkali on the light absorption, energy transfer and protein secondary structures of core antenna subunits CP43 and CP47 of photosystem II

The effects of acid and alkali treatment on the light absorption, energy transfer and protein secondary structure of the photosystem II core antenna CP43 and CP47 of spinach were investigated by the absorption spectra, fluorescence emission spectra and ciruclar dichroism spectra. It has been found that acid treatment caused the appearance of absorption characteristic of pheophytin a (Pheo a), whereas alkali treatment induced a new absorption peak at 642 nm. The energy transfer between β-carotene and chlorophyll a (Chl a) in CP43 was easily disturbed by alkali, whereas in CP47 was readily affected by acid. As to the effects on the secondary structure of proetins in CP43 and CP47, effects of acid were far less than those of alkali. Both acid and alkali disturbed the microenvironment of Chl a and interfered exciton interaction between Chl a molecules. It was suggested that acid and alkali affect the light absorption, energy transfer and protein secondary structure of CP43 and CP47 in a differenty way. H⁺ can permeate into the internal space of α-helix, change Chl a into Pheo a and disturb the microenvironment of pgiments without damaging the secondary structure of protein, whereas OH⁻ can induce the protein unfolding at first, then saponify Chl a to chlorophyllide and disturb the microenvironment of pigments.     

Excitation dynamics in the LHCII complex of higher plants: modeling based on the 2.72 Angstrom crystal structure

We have modeled steady-state spectra and energy-transfer dynamics in the peripheral plant light-harvesting complex LHCII using new structural data. The dynamics of the chlorophyll (Chl) b-->Chl a transfer and decay of selectively excited "bottleneck" Chl a and b states have been studied by femtosecond pump-probe spectroscopy. We propose an exciton model of the LHCII trimer (with specific site energies) which allows a simultaneous quantitative fit of the absorption, linear-dichroism, steady-state fluorescence spectra, and transient absorption kinetics upon excitation at different wavelengths. In the modeling we use the experimental exciton-phonon spectral density and modified Redfield theory. We have found that fast b-->a transfer is determined by a good connection of the Chls b to strongly coupled Chl a clusters, i.e., a610-a611-a612 trimer and a602-a603 and a613-a614 dimers. Long-lived components of the energy-transfer kinetics are determined by a quick population of red-shifted Chl b605 and blue-shifted Chl a604 followed by a very slow (3 ps for b605 and 12 ps for a604) flow of energy from these monomeric bottleneck sites to the Chl a clusters. The dynamics within the Chl a region is determined by fast (with time constants down to sub-100 fs) exciton relaxation within the a610-a611-a612 trimer, slower 200-300 fs relaxation within the a602-a603 and a613-a614 dimers, even slower 300-800 fs migration between these clusters, and very slow transfer from a604 to the quasi-equilibrated a sites. The final equilibrium is characterized by predominant population of the a610-a611-a612 cluster (mostly the a610 site). The location of this cluster on the outer side of the LHCII trimer probably provides a good connection with the other subunits of PSII.     

New Insight into the Water‐Soluble Chlorophyll‐Binding Protein from Lepidium virginicum

This study describes new recombinant water‐soluble chlorophyll (Chl)‐binding proteins (WSCP) from Lepidium virginicum (LvWSCP). This complex binds four Chls (i.e. two dimers of Chls) per protein tetramer. We show that absorption, emission, hole‐burned (HB) spectra and the shape of the zero‐phonon hole (ZPH) action spectrum are consistent with the presence of uncorrelated excitation energy transfer between two Chl dimers. Thus, there is no need to include slow protein relaxation within the lowest excited state (as suggested in a previous analysis of cauliflower WSCP [Schmitt, F.‐J. et al. (2008) J. Phys. Chem. B, 112, 13951; Pieper, J. et al. (2011) J. Phys. Chem. B, 115, 4053]) in order to explain the large shift observed between the maxima of the ZPH action and emission spectra. Experimental evidence is provided which shows that electron exchange between lowest energy Chls and the protein may occur, i.e. electrons can be trapped at low temperature by nearby aromatic amino acids. The latter explains the shape of nonresonant HB spectra (i.e. the absence of antihole), demonstrating that the hole‐burning process in LvWSCP is largely photochemical in nature, though a small contribution from nonphotochemical hole burning (in resonant holes) is also observed.     

Redox potentials of chlorophylls and beta-carotene in the antenna complexes of photosystem II

Electron transfer (ET) processes in reaction centers (RC) of photosystem II (PSII) are prerequisites of oxygen generation. They are promoted by energy transfer from antenna to RC. Here, we calculated the redox potentials of chlorophylla/beta-carotene (Chla/Car) in PSII CP43/CP47 antenna complexes, solving the linearized Poisson-Boltzmann (LPB) equation based on the PSII crystal structure. The majority of antenna Chla redox potentials for reduction/oxidation were lower than those of RC Chla. Hence, ET events with excess electrons remain localized in the RC. Simultaneously antenna Chla can serve as an efficient cation sink to rereduce RC Chla if normal PSII function is inhibited. Especially three antenna Chla (Chl-47, Chl-18, and Chl-12) and two Car bridging the space between Chl(Z(D1)) and cytochrome (cyt) b559 have the same level of oxidation redox potential. Together with Chl(Z(D2)) they form an electron hole transfer pathway and temporary storage device guiding from the oxidized P680(+.) Chla to the cyt b559. This path may play a photoprotective role as efficient electron hole quencher.     

Pigment-pigment and pigment-protein interactions in recombinant water-soluble chlorophyll proteins (WSCP) from cauliflower

Plants contain water-soluble chlorophyll-binding proteins (WSCPs) that function neither as antennas nor as components of light-induced electron transfer of photosynthesis but are likely constituents of regulatory protective pathways in particular under stress conditions. This study presents results on the spectroscopic properties of recombinant WSCP from cauliflower reconstituted with chlorophyll b (Chl b) alone or with mixtures of Chl a and Chl b. Two types of experiments were performed: (a) measurements of stationary absorption spectra at 77 and 298 K and CD spectra at 298 K and (b) monitoring of laser flash-induced transient absorption changes with a resolution of 200 fs in the time domain of up to 100 ps. On the basis of a theoretical analysis outlined by Renger et al. (J. Phys. Chem. B 2007, 111, 10487) the data obtained in part (a) are interpreted within a model where tetrameric WSCP binds predominantly two Chl molecules in the form of an excitonically coupled "open sandwich" dimer with a tilt angle of about 30 degrees between the chlorin planes. The time-resolved measurements on Chl a/Chl b heterodimers are described by two exponential kinetics with time constants of 400 fs and 7 ps. These kinetics are assumed to reflect a heterogeneous population of WSCPs with Chl dimers either in excitonic coupled "open sandwich" or weakly coupled geometric arrays. The 400 fs component is assigned to excited-state relaxations from the upper to the lower excitonic level of the strongly coupled "open sandwich" dimer, while the 7-8 ps component probably indicates excitation energy transfer from 1Chl b* to Chl a in a dimer array with weak coupling due to significantly longer mutual distances between the chlorin rings.     

Application of non-photochemical hole burning to the two-photon spectroscopy of impurity molecules in low temperature glasses

One-photon non-photochemical hole burning (NPHB) is shown to be a viable method for producing narrow-line two-photon spectra of molecules in solution at low temperature. The TPE spectrum of phenanthrene at 2 K in a glassy medium is presented and is shown to manifest one-photon NPHB effects.     

POLARIZED SITE-SELECTION SPECTROSCOPY OF CHLOROPHYLL a IN DETERGENT

Monomeric chlorophyll a (Chl a ) was obtained from the isolated core antenna complex CP47 of photo-system II after incubation with the detergent triton X-100 and was studied by low-temperature polarized light spectroscopy with the aim to obtain model spectra for Chi a in intact photosynthetic complexes. Evidence is presented by circular dichroism and anisotropy measurements that the isolated chlorophyll is monomeric. The absorption bandwidths are relatively large compared to those found in photosynthetic complexes due to inhomogeneous broadening introduced by the detergent. By selective laser excitation at low temperature, considerable narrowing can be achieved. A number of vibrational bands are resolved in the site-selected, polarized absorption and fluorescence emission spectra. The emission spectrum of Chi a in detergent-damaged CP47 is compared with that of Chi a in the intact light-harvesting complex of photosystem II (LHC-II) from green plants. The spectra are remarkably similar indicating that the low-temperature thermal emitter in LHC-II has spectral properties that are very similar to those of monomeric Chl a .     

Chlorophyll excitation energies and structural stability of the CP47 antenna of photosystem II: a case study in the first-principles simulation of light-harvesting complexes

Natural photosynthesis relies on light harvesting and excitation energy transfer by specialized pigment–protein complexes. Their structure and the electronic properties of the embedded chromophores define the mechanisms of energy transfer. An important example of a pigment–protein complex is CP47, one of the integral antennae of the oxygen-evolving photosystem II (PSII) that is responsible for efficient excitation energy transfer to the PSII reaction center. The charge-transfer excitation induced among coupled reaction center chromophores resolves into charge separation that initiates the electron transfer cascade driving oxygenic photosynthesis. Mapping the distribution of site energies among the 16 chlorophyll molecules of CP47 is essential for understanding excitation energy transfer and overall antenna function. In this work, we demonstrate a multiscale quantum mechanics/molecular mechanics (QM/MM) approach utilizing full time-dependent density functional theory with modern range-separated functionals to compute for the first time the excitation energies of all CP47 chlorophylls in a complete membrane-embedded cyanobacterial PSII dimer. The results quantify the electrostatic effect of the protein on the site energies of CP47 chlorophylls, providing a high-level quantum chemical excitation profile of CP47 within a complete computational model of “near-native” cyanobacterial PSII. The ranking of site energies and the identity of the most red-shifted chlorophylls (B3, followed by B1) differ from previous hypotheses in the literature and provide an alternative basis for evaluating past approaches and semiempirically fitted sets. Given that a lot of experimental studies on CP47 and other light-harvesting complexes utilize extracted samples, we employ molecular dynamics simulations of isolated CP47 to identify which parts of the polypeptide are most destabilized and which pigments are most perturbed when the antenna complex is extracted from PSII. We demonstrate that large parts of the isolated complex rapidly refold to non-native conformations and that certain pigments (such as chlorophyll B1 and β-carotene h1) are so destabilized that they are probably lost upon extraction of CP47 from PSII. The results suggest that the properties of isolated CP47 are not representative of the native complexed antenna. The insights obtained from CP47 are generalizable, with important implications for the information content of experimental studies on biological light-harvesting antenna systems.

Advanced QM/MM simulations explore the excited states of a photosynthetic light-harvesting antenna in its physiologically complexed state and model the consequences of extraction on conformational and electronic properties.     

LIGHT-ABSORPTION AND ELECTRON-TRANSPORT BALANCE BETWEEN PHOTOSYSTEM II AND PHOTOSYSTEM I IN SPINACH CHLOROPLASTS

Abstract— The distribution of absorbed light and the turnover of electrons by the two photosystems in spinach chloroplasts was investigated. This was implemented upon quantitation of photochemical reaction centers, chlorophyll antenna size and composition of each photosystem (PS), and rate of light absorption in situ. In spinach chloroplasts, the photosystem stoichiometry was PSIIJPSII_α/PSII_β/PSI= 1.3/0.4/1.0. The number (N) of chlorophyll (a+b) molecules associated with each PS was N(PSII_α)/N(PSII_β)/N(PSI)=230/100/200, i.e. about 65% of all Chl is associated with PSII and about 35% with PSI. Light absorption by PSII in vivo is selectively attenuated at the molecular, membrane and leaf levels, (a) The rate of light absorption by PSII was only 0.85 that of PSI because of the lower rate of light absorption by Chl b as compared to Chl a (approximately 80% of all Chl b in the chloroplast is associated with PSII). (b) The exclusive localization of PSII_α in the membrane of the grana partition regions and of PSI in intergrana lamellae resulted in a differential “sieve effect” or “flattening of absorbance” by the photosystems in the two membrane regions. Due to this phenomenon, the rate of light absorption by PSII was lower than that of PSI by 15-20%. (c) Selective filtering of sunlight through the spinach leaf results in a substantial distortion of the effective absorbance spectra and concomitant attenuation of light absorption by the two photosystems. Such attenuation was greater for PSII than for PSI because the latter benefits from light absorption in the 700-730 nm region. It is concluded that, in spite of its stoichiometric excess in spinach chloroplasts, light absorption by PSII is not greater than that by PSI due to the different molecular composition of the two light-harvesting antenna systems, due to the localization of PSII in the grana, and also because of the light transmission properties through the leaf. The elevated PSII/PSI reaction center ratio of 1.7 and the association of 65% of all Chl with PSII help to counter the multilevel attenuation of light absorption by PSII and ensure a balanced PSII/PSI electron turnover ratio of about 1:1.     

Allowed and forbidden d-d transitions in poly(3,5-dimethylpyrazolyl)methane complexes of nickel(II)

Absorption spectra of four nickel(II) complexes with poly(pyrazolyl)methane ligands are presented in the NIR-VIS-UV region and the band system corresponding to the lowest-energy spin-allowed and spin-forbidden transitions is analyzed. A quantitative theoretical model involving coupled electronic states provides precise energies for the lowest-energy triplet and singlet excited states and allows comparisons between complexes with a variable number of nitrogen and oxygen ligator atoms. Singlet energies between 12,840 and 13,000 cm(-1) are determined for heteroleptic complexes. These energies are in an intermediate range between those for homoleptic complexes with either nitrogen or oxygen ligator atoms with singlet states at approximately 12,000 and 14,000 cm(-1), respectively. The new theoretical approach is compared to the traditional ligand-field parameters obtained from the maxima of the broad, spin-allowed absorption bands.     

Ultrafast excitation relaxation in light-harvesting complex LH2 from <Emphasis Type="Italic">Rb. sphaeroides</Emphasis> 601

The energy relaxation and kinetic evolution of transient spectra of bacteriochlorophylls (BChls) in light-harvesting complex LH2 from Rb. sphaeroides 601 were investigated using femtosecond pump-probe technique. Upon 783 nm excitation, the energy at B800 BChls experiences an intramolecular redistribution with 0.35 ps time constant before transferring to B850 BChls. With tuning the excitation wavelength, the dynamical evolution of excited BChls was clearly observed, which indicates an obvious competition between the ground state bleaching and excited state absorption (ESA) of BChls involved and an isosbestic point near 818 nm, and also demonstrates that from the lower electronic excited state of B800 BChls to the higher excitonic state of B850 BChls is an efficient routine for energy transfer. The excitation energy in higher excitonic states of B850 BChls relaxes rapidly to the next lowest excitonic state by interconversion, delocalization to adjacent molecular, populating the lowest excitonic state and the change of molecular conformation.     

Intense non-photochemical hole-burning spectra with discrete phonon structure in an aromatic organic glass (diphenylanthracene)

Hole burning in a tetracene-doped 9,10-diphenylanthracene glass deposited at 4.2 K occurs at an initial efficiency of 0.2 ± 0.1. The hole depth in the saturation limit is 0.6. The spectra show sharp phonon structures. The role of the phenyl rings for non-photochemical hole burning (NPHB) is emphasized.     

Optical spectra of synechocystis and spinach photosystem II preparations at 1.7 K: identification of the D1-pheophytin energies and stark shifts

We report and compare highly resolved, simultaneously recorded absorption and CD spectra of active Photosystem II (PSII) samples in the range 440-750 nm. From an appropriately scaled comparison of spinach membrane fragment (BBY) and PSII core spectra, we show that key features of the core spectrum are quantitatively represented in the BBY data. PSII from the cyanobacterium Synechocystis 6803 display spectral features in the Qy region of comparable width (50-70 cm(-1) fwhm) to those seen in plant PSII but the energies of the resolved features are distinctly different. A comparison of spectra taken of PSII poised in the S1QA and S2QA(-) redox states reveals electrochromic shifts largely attributable to the influence of QA(-) on Pheo(D1). This allows accurate determinations of the Pheo(D1) Qy absorption positions to be at 685.0 nm for spinach cores, 685.8 nm for BBY particles, and 683.0 nm for Synechocystis. These are discussed in terms of earlier reports of the Pheo(D1) energies in PSII. The Qx transition of Pheo(D1) undergoes a blue shift upon Q(A) reduction, and we place a lower limit of 80 cm(-1) on this shift in plant material. By comparing the magnitude of the Stark shifts of the Qx and Qy bands of Pheo(D1), the directions of the transition-induced dipole moment changes, Deltamu(x) and Deltamu(y), for this functionally important pigment could be determined, assuming normal magnitudes of the Deltamu's. Consequently, Deltamu(x) and Deltamu(y) are determined to be approximately orthogonal to the directions expected for these transitions. Low-fluence illumination experiments at 1.7 K resulted in very efficient formation of QA(-). This was accompanied by cyt b(559) oxidation in BBYs and carotenoid oxidation in cores. No chlorophyll oxidation was observed. Our data allow us to estimate the quantum efficiency of PSII at this temperature to be of the order 0.1-1. No Stark shift associated with the S1-to-S2 transition of the Mn cluster is evident in our samples. The similarity of Stark data in plants and Synechocystis points to minimal interactions of Pheo(D1) with nearby chloropyll pigments in active PSII preparations. This appears to be at variance with interpretations of experiments performed with inactive solubilized reaction-center preparations.     

Efficient energy transfer from the long-wavelength antenna chlorophylls to P700 in photosystem I complexes from Spirulina platensis

To study the role of the long-wavelength chlorophylls (Chl) in photosystem I (PSI), the action spectra of P700 photooxidation at 293 and 77 K have been measured for PSI trimeric and monomeric complexes isolated from Spirulina platensis. The long-wavelength Chls which absorb in the region 710dash740 nm transfer excitation energy to the reduced P700 with the same efficiency as bulk antenna Chls, causing the oxidation of P700. The relative quantum yield of P700 photooxidation is about unity (293-77 K) even under the direct excitation of Chl absorbing at 735 nm (Chl735). At 77 K Chl735 exhibits a fluorescence band at 760 nm (F760) whose intensity is quenched under illumination of the PSI trimeric complexes from Spirulina. The relative quantum yield of F760 quenching is not dependent on the wavelength of excitation in the region 620–750 nm. Since the value of the overlap integral between the band of F760 and the absorption band of the cation radical of P700 (P700⁺) is higher than that of the P700 band, it is suggested that Chl735 transfers energy to P700⁺ more efficiently than to reduced P700; energy transfer to P700⁺ causes the quenching of F760. A linear relationship between the photooxidation rate of P700 and the fraction of P700⁺ at 293 K indicates that the energy exchange between PSI subunits of the trimer is negligible. Thus, the antenna of PSI trimers of Spirulina is organized in separate photosynthetic units.     

Ultrafast excitation relaxation in light-harvesting complex LH2 from Rb.sphaeroides 601

The light-driven reactions of photosynthesis are the means by which nature converts solar energy into electrochemical potential, which is eventually stored as chemical energy. These initial reactions occur in two closely coupled pigment systems, the network of so-called antenna system in which the excitation en-ergy is absorbed by the pigments and efficiently transported to another system, the photosynthetic reac-tion center where the energy is converted into a stable trans-membrane charge sepa…     

Immobilization of Photosynthetic Pigments into Silica-Surfactant Nanocomposite Films

Highly transparent silica-surfactant nanocomposite films containing photosynthetic pigments have been successfully formed through the solubilization of chlorophyll a (Chl a) into surfactant micelles. The UV-vis absorption spectra indicated that a large amount of Chl a were transformed into pheophytin a in the films. These photosynthetic pigments were well dispersed in the surfactant assemblies and their chlorin rings were exposed to the surface of silica layers. Even under an air atmosphere, the photostability of immobilized pigments was largely improved in comparison with that in a homogeneous Chl a solution. Because both Chl a and pheophytin a molecules are effective for the photosensitive charge separation, the present film system is very suitable for heterogeneous immobilizing media for photosynthetic pigments from the viewpoint of in vitro biomimetic devices for solar energy conversion.     

Theoretical studies of the spectroscopic properties of [Pt(trpy)C[triple bond]CR]+ (trpy = 2,2',6',2"-terpyridine; R = H, CH2OH, and C6H5)

Electronic structures and spectroscopic properties of [Pt(trpy)C[triple bond]CR](+) (trpy = 2,2', 6',2' '-terpyridine; R = H (1), CH(2)OH (2), and C(6)H(5) (3) ) are studied by ab initio and DFT methods. The ground- and excited-state structures are optimized by the MP2 and CIS methods, respectively. The absorption and emission spectra in the dichloromethane solution are obtained by using TD-DFT (B3LYP) method associated with the PCM model. The calculations indicate that, for 1-3, the variation of the substituents on the acetylide ligand only slightly changes their structures in ground and excited states but leads to a sizable difference in the electronic structures. In both cases of absorption and emission, the energy levels of HOMOs for 1-3 are sensitive to the substituents on acetylide ligand and increase obviously with the introduction of the electron-donating groups; however, those of trpy-based LUMOs vary slightly. The lowest-energy emissions are attributed to triplet acetylide/Pt --> trpy charge transfer ((3)LLCT/(3)MLCT) transitions and the lowest-energy absorptions and emissions for 1-3 are red-shifted on the order of 1 < 2 < 3 when the electron-donating groups are introduced into the acetylide ligand. By comparison of the results obtained by using different functionals in TD-DFT method, the calculations indicate that the exchange-correlation functionals (B3LYP, B3P86 and B3PW91) involving Becke three parameter hybrid functionals are appropriate for the terpyridyl platinum(II) acetylide complexes to get the relatively satisfactory results for the absorption spectra. The underestimated excitation energies of lowest-lying absorption bands are probably due to insufficient flexibility in TD-DFT method to describe states with large charge transfer.     

Excitonic states in photosystem II reaction center

The excited states of a structurally well-determined photosystem II (PSII) reaction center are obtained using an effective Hamiltonian for the interaction between the Q(y) states. The latter are calculated using the time-dependent density functional theory (DFT) method in DFT-optimized geometries, but with conserved side group orientations. Of particular importance is the orientation of the vinyl group of ring I. Couplings are calculated using actual transition charge distributions via the INDO/S model. Good agreement with experimental spectra is obtained. The lowest excited state is mainly located on the inactive B-side, but with a large component on P(A) too, making charge separation to H(A) possible at low temperature. The "trap state" and triplet state are localized on the inactive B-side. Since the spin singlet Q(y) states of the reaction center are all within a rather small energy range, the state with the highest component of B(A)*, on the blue side of the Q(y) absorption, has a rather high Boltzmann population at room temperature. The charge-transfer states, however, have a rather large spread and cannot be calculated accurately at present. The orientation of the phytyl chains is important and has as a consequence that the energy for the charge-separated B(A)+ H(A)- state is significantly lower than the corresponding state on the B-side. It follows that the B(A)* and P(A)* states are both possible origins for a fast charge separation in PSII.