Gas-phase heats of formation for alkylimmonium cations by photoionization mass spectrometry

Photoionization mass spectrometry has been used to measure appearance energies for immonium cation formation from 25 alkyl amine precursors. A number of the unimolecular fragmentation processes are shown to involve excess energy at threshold so that, of the 11 different cations investigated, it is only possible to derive reliable 298 K heats of formation for CH2=NH2+ (749.0 +/- 0.9 kJ mol(-1)), CH(3)CH=NH2+ (666.1 +/- 1.1 kJ mol(-1)), C(2)H(5)CH=NH2+ (636.8 +/- 2.5 kJ mol(-1)), CH2=NH(CH3)+ (706.1 +/- 1.0 kJ mol(-1)), CH2=NH(C(2)H(5))+ (668.4 +/- 1.3 kJ mol(-1)), and CH2=N(CH3)2+ (668.0 +/- 2.5 kJ mol(-1)). When these are compared to those calculated by the G3, G3B3, G2, G2(MP2), CBS-APNO, and W1U composite ab initio methods, it is found that the smallest mean absolute deviation of 1.2 +/- 0.8 kJ mol(-1) is obtained from the G2 calculations.     

Competition between NH.HIr Intramolecular Proton-Hydride Interactions and NH.FBF(3)(-) or NH.O Intermolecular Hydrogen Bonds Involving [IrH(2-thiazolidinethione)(4)(PCy(3))](BF(4))(2) and Related Complexes

The reaction of IrH(5)(PCy(3))(2) in acetone with 2 equiv of HBF(4) results in the formation of the air-stable complex [Ir(H)(2)(PCy(3))(2)(acetone)(2)]BF(4), 1. The reaction of 1 with an excess of 2-thiazolidinethione or 2-benzothiazolethione in the presence of 2 equiv of HBF(4) gives the complexes [Ir(H)(PCy(3))(L)(4)](BF(4))(2) (2a, L = 2-thiazolidinethione; 2b, L = 2-benzothiazolethione). Complex 2a has an intramolecular NH.H(Ir).HN interaction both in the crystalline solid as determined by X-ray diffraction and in a CD(2)Cl(2) solution as determined by the T(1) method. The d(HH) were determined to be 2.2 +/- 0.1 ? in the solid state and 1.9 +/- 0.1 ? in solution. The NH.H(Ir).HN interactions and NH.F.HN hydrogen bonds which involve FBF(3)(-) form a four-member ring in a butterfly conformation. The nOe effect of the hydride on the NH proton is around 10%. A crystal of 2a is in the triclinic space group P&onemacr; with a = 11.426(3), b = 11.922(3), c = 19.734(4) ?, alpha = 87.05(1) degrees, beta = 88.23(1) degrees, gamma = 75.50(1) degrees, V = 2599(1) ?(3), and Z = 2 at T = 173 K; full-matrix least-squares refinement on F(2) was performed for 10 198 independent reflections; R[F(2)>2sigma(F(2))] = 0.0480, R(w)(F(2)) = 0.099. The formation of the NH.HIr proton-hydride interaction is as favorable as the formation of intermolecular hydrogen bonds NH.FBF(3)(-) or NH.O hydrogen bonds with OPPh(3) or H(2)O in CD(2)Cl(2). A similar NH.HIr interaction also has been observed in the complexes [Ir(H)(2)(PCy(3))(2)(L)(2)]BF(4) (3a, L = 2-thiazolidinethione; 3b, L = 2-benzothiazolethione) but not in the complexes with L = NH(2)NH(2) (3c) and L = NH(3) (3d). Both the NH and IrH protons are deuterated when a solution of 2 or 3 in C(6)D(6) is exposed to 1 atm of D(2) gas or D(2)O.     

Selective binding of monovalent cations to the stacking G-quartet structure formed by guanosine 5'-monophosphate: a solid-state NMR study

We report a solid-state multinuclear ((23)Na, (15)N, (13)C, and (31)P) NMR study on the relative affinity of monovalent cations for a stacking G-quartet structure formed by guanosine 5'-monophosphate (5'-GMP) self-association at pH 8. Two major types of cations are bound to the 5'-GMP structure: one at the surface and the other within the channel cavity between two G-quartets. The channel cation is coordinated to eight carbonyl oxygen atoms from the guanine bases, whereas the surface cation is close to the phosphate group and likely to be only partially hydrated. On the basis of solid-state (23)Na NMR results from a series of ion titration experiments, we have obtained quantitative thermodynamic parameters concerning the relative cation binding affinity for each of the two major binding sites. For the channel cavity site, the values of the free energy difference (Delta G degrees at 25 degrees C) for ion competition between M(+) and Na(+) ions are K(+) (-1.9 kcal mol(-1)), NH(4)(+) (-1.8 kcal mol(-1)), Rb(+) (-0.3 kcal mol(-1)), and Cs(+) (1.8 kcal mol(-1)). For the surface site, the values Delta G degrees are K(+) (2.5 kcal mol(-1)), NH(4)(+) (-1.3 kcal mol(-1)), Rb(+) (1.1 kcal mol(-1)), and Cs(+) (0.9 kcal mol(-1)). Solid-state NMR data suggest that the affinity of monovalent cations for the 5'-GMP structure follows the order NH(4)(+) > Na(+) > Cs(+) > Rb(+) > K(+) at the surface site and K(+) > NH(4)(+) > Rb(+) > Na(+) > Cs(+) > Li(+) at the channel cavity site. We have found that the cation-induced stability of a 5'-GMP structure is determined only by the affinity of monovalent cations for the channel site and that the binding of monovalent cations to phosphate groups plays no role in 5'-GMP self-ordered structure. We have demonstrated that solid-state (23)Na and (15)N NMR can be used simultaneously to provide mutually complementary information about competitive binding between Na(+) and NH(4)(+) ions.     

Theoretical investigation of hydrogen bonds between CO and HNF2, H2NF, and HNO

Ab initio quantum mechanics methods were applied to investigate the hydrogen bonds between CO and HNF2, H2NF, and HNO. We use the Hartree-Fock, MP2, and MP4(SDQ) theories with three basis sets 6-311++G(d,p), 6-311++G(2df,2p), and AUG-cc-pVDZ, and both the standard gradient and counterpoise-corrected gradient techniques to optimize the geometries in order to explore the effects of the theories, basis sets, and different optimization methods on this type of H bond. Eight complexes are obtained, including the two types of C...H-N and O...H-N hydrogen bonds: OC...HNF2(C(s)), OC...H2NF(C(s) and C1), and OC...HNO(C(s)), and CO...HNF2(C(s)), CO...H2NF(C(s) and C1), and CO...HNO(C(s)). The vibrational analysis shows that they have no imaginary frequencies and are minima in potential energy surfaces. The N-H bonds exhibit a small decrease with a concomitant blue shift of the N-H stretch frequency on complexation, except for OC...HNF2 and OC...H2NF(C1), which are red-shifting at high levels of theory and with large basis sets. The O...H-N hydrogen bonds are very weak, with 0 K dissociation energies of only 0.2-2.5 kJ/mol, but the C...H-N hydrogen bonds are stronger with dissociation energies of 2.7-7.0 kJ/mol at the MP2/AUG-cc-pVDZ level. It is notable that the IR intensity of the N-H stretch vibration decreases on complexation for the proton donor HNO but increases for HNF2 and H2NF. A calculation investigation of the dipole moment derivative leads to the conclusion that a negative permanent dipole moment derivative of the proton donor is not a necessary condition for the formation of the blue-shifting hydrogen bond. Natural bond orbital analysis shows that for the C...H-N hydrogen bonds a large electron density is transferred from CO to the donors, but for the O...H-N hydrogen bonds a small electron density transfer exists from the proton donor to the acceptor CO, which is unusual except for CO...H2NF(C(s)). From the fact that the bent hydrogen bonds in OC(CO)...H2NF(C(s)) are quite different from those in the others, we conclude that a greatly bent H-bond configuration shall inhibit both hyperconjugation and rehybridization.     

A study of C-F.M+ interaction: alkali metal complexes of the fluorine-containing cage compound

The C-F.M(+) interaction was investigated by employing a cage compound 1 that has four fluorobenzene units. The NMR ((1)H, (13)C, and (19)F) spectra and X-ray crystallographic analyses of 1 and its metal complexes showed clear evidence of the interaction. Short C-F.M(+) distances (C-F.K(+), 2.755 and 2.727 A; C-F.Cs(+), 2.944 and 2.954 A) were observed in the crystalline state of K(+) subset 1 and Cs(+) subset 1. Furthermore, the C-F bond lengths were elongated by the interaction with the metal cations. By calculating Brown's bond valence, it is shown that the contribution of the C-F unit to cation binding is comparable or greater than the ether oxygen in the crystalline state. Representative spectroscopic changes implying the C-F.M(+) interaction were observed in the NMR ((1)H, (13)C, and (19)F) spectra. In particular, (133)Cs-(19)F spin coupling (J = 54.9 Hz) was observed in the Cs(+) complex.     

A study of C-F...M(+) interaction: metal complexes of fluorine-containing cage compounds

The C-F...M(+) interaction was investigated by observation of the NMR spectroscopic changes and complexation studies between metal cations and the cage compounds 1 and 2 which have fluorobenzene units as donor atoms. As a result, the interaction was detected with all of the metal cations which form complexes with 1 and 2. The stability of the complexes of 1 and 2 was determined by the properties of the metal cations (ionic radii and degree of hydrolysis), not by the hard-soft nature of the cations. Crystallographic analyses of Tl(+) subset 1 and La(3+) subset 2 provided structural information (interatomic distances and bond angles), and the bond strengths, C-F...M(+), O...M(+), and N...M(+), were estimated by Brown's equation based on the structural data. Short C-F...Tl(+) (2.952-3.048 A) distances were observed in the complex Tl(+) subset 1. The C-F bond lengths in the complexes, Tl(+) subset 1 and La(3+) subset 2, are elongated compared to those of the metal-free compounds. Interestingly, no solvent molecules including water molecules were coordinated to La(3+) in the La(3+) subset 2. The stabilization energy of cation-dipole interaction was calculated on the basis of the data from X-ray crystallographic analysis, and it is roughly consistent with the (-)Delta H values estimated in solution. Thus, the C-F...M(+) interaction can be expressed by the cation-dipole interaction. This result explains the fact that compound 1 which has fluorine atom as hard donor strongly binds soft metals such as Ag(+) and Tl(+). Furthermore, it was concluded that the fluorobenzene unit has a poor electron-donating ability compared to that of ether oxygen or amine nitrogen, and thus the ratio of the coordination bond in C-F...M(+) is small. The specific and remarkable changes in the (1)H, (13)C, and (19)F NMR spectra were observed accompanied by the complexation between M(+) and the hosts 1 and 2. These spectral features are important tools for the investigation of the C-F...M(+) interaction. Furthermore, F.Tl(+) spin couplings were observed at room temperature in the Tl(+) subset 1, 2 (J(F-Tl) = 2914 Hz for Tl(+) subset 1 and 4558 Hz for Tl(+) subset 2), and these are clear and definitive evidence of the interaction.     

A solid-state 23Na NMR study of monovalent cation binding to double-stranded DNA at low relative humidity

We report a solid-state (23)Na NMR study of monovalent cation (Li(+), Na(+), K(+), Rb(+), Cs(+) and NH(4) (+)) binding to double-stranded calf thymus DNA (CT DNA) at low relative humidity, ca 0-10%. Results from (23)Na--(31)P rotational echo double resonance (REDOR) NMR experiments firmly establish that, at low relative humidity, monovalent cations are directly bound to the phosphate group of CT DNA and are partially dehydrated. On the basis of solid-state (23)Na NMR titration experiments, we obtain quantitative thermodynamic parameters concerning the cation-binding affinity for the phosphate group of CT DNA. The free energy difference (DeltaG degrees ) between M(+) and Na(+) ions is as follows: Li(+) (-1.0 kcal mol(-1)), K(+) (7.2 kcal mol(-1)), NH(4) (+) (1.0 kcal mol(-1)), Rb(+) (4.5 kcal mol(-1)) and Cs(+) (1.5 kcal mol(-1)). These results suggest that, at low relative humidity, the binding affinity of monovalent cations for the phosphate group of CT DNA follows the order: Li(+) > Na(+) > NH(4) (+) > Cs(+) > Rb(+) > K(+). This sequence is drastically different from that observed for CT DNA in solution. This discrepancy is attributed to the different modes of cation binding in dry and wet states of DNA. In the wet state of DNA, cations are fully hydrated. Our results suggest that the free energy balance between direct cation-phosphate contact and dehydration interactions is important. The reported experimental results on relative ion-binding affinity for the DNA backbone may be used for testing theoretical treatment of cation-phosphate interactions in DNA.     

A photometric study of the complexation reaction between Alizarin complexan and zinc(II), nickel(II), lead(II), cobalt(II) and copper(II)

The complexation reaction between Alizarin complexan ([3-N,N-di(carboxymethyl)aminomethyl]-1,2-dihydroxyanthraquinone; H(4)L) and zinc(II), nickel(II), lead(II), cobalt(II) and copper(II) has been studied by a spectrophotometric method. All these metal ions form 1:1 complexes with HL; 2:1 metal:ligand complex were found only for Pb(II) and Cu(II). The stability constants are (ionic strength I = 0.1, 20 degrees C): Zn(2+) + HL(3-) right harpoon over left harpoon ZnHL(-) log K +/- 3sigma(log K) = 12.19 +/- 0.09 (I = 0.5) Ni(2+) + HL(3-) right harpoon over left harpoon NiHL(-) log K +/- 3sigma(log K) = 12.23 +/- 0.21 Pb(2+) + HL(3-) right harpoon over left harpoon PbHL(-) log K +/- 3sigma(log K) = 11.69 +/- 0.06 PbHL(-) + Pb(2+) right harpoon over left harpoon Pb(2)L + H(+) log K approximately -0.8 Co(2+) + HL(3-) right harpoon over left harpoon CoHL(-) log K 3sigma(log K) = 12.25 + 0.13 Cu(2+) + HL(3-) right harpoon over left harpoon CuHL(-) log K 3sigma(log K) = 14.75 +/- 0.07 Cu(2+) + CuHL(-) right harpoon over left harpoon Cu(2)L + H(+) log K approximately 3.5 The solubility and stability of both the reagent and the complexes and the closenes of the values of the stability constants make this reagent suitable for the photometric detection of several metal ions in the eluate from an ion-exchange column.     

The dynamical properties of the aromatic hydrogen bond in NH4(C6H5)4B from quasielastic neutron scattering

NH(4)(C(6)H(5))(4)B represents a prototypical system for understanding aromatic H bonds. In NH(4)(C(6)H(5))(4)B an ammonium cation is trapped in an aromatic cage of four phenyl rings and each phenyl ring serves as a hydrogen bond acceptor for the ammonium ion as donor. Here the dynamical properties of the aromatic hydrogen bond in NH(4)(C(6)H(5))(4)B were studied by quasielastic incoherent neutron scattering in a broad temperature range (20< or =T< or =350 K). We show that in the temperature range from 67 to 350 K the ammonium ions perform rotational jumps around C(3) axes. The correlation time for this motion is the lifetime of the "transient" H bonds. It varies from 1.5 ps at T=350 K to 150 ps at T=67 K. The activation energy was found to be 3.14 kJ mol, which means only 1.05 kJ mol per single H bond for reorientations around the C(3) symmetry axis of the ammonium group. This result shows that the ammonium ions have to overcome an exceptionally low barrier to rotate and thereby break their H bonds. In addition, at temperatures above 200 K local diffusive reorientational motions of the phenyl rings, probably caused by interaction with ammonium-group reorientations, were found within the experimental observation time window. At room temperature a reorientation angle of 8.4 degrees +/-2 degrees and a correlation time of 22+/-8 ps were determined for the latter. The aromatic H bonds are extremely short lived due to the low potential barriers allowing for molecular motions with a reorientational character of the donors. The alternating rupture and formation of H bonds causes very strong damping of the librational motion of the acceptors, making the transient H bond appear rather flexible.     

Complexation of polyvalent cyclodextrin ions with oppositely charged guests: entropically favorable complexation due to dehydration

Thermodynamic parameters for complexation of polyvalent cyclodextrin (CD) cation and anion with oppositely charged guests have been determined in D2O containing 0.02 M NaCl by means of 1H-NMR spectroscopy. Protonated heptakis(6-amino-6-deoxy)-beta-CD (per-NH3+-beta-CD) forms stable inclusion complexes with monovalent guest anions. The enthalpy (deltaH) and entropy changes (deltaS) for complexation of per-NH3+-beta-CD with p-methylbenzoate anion (p-CH3-Ph-CO2-) are 3.8 +/- 0.7 kJ mol(-1) and 88.6 +/- 2.2 J mol(-1) K(-1), respectively. The deltaH and deltaS values for the native beta-CD-p-CH3-Ph-CO2- system are -8.6 +/- 0.1 kJ mol(-1) and 15.3 +/- 0.7 J mol(-1) K(-1), respectively. The thermodynamic parameters clearly indicate that dehydration from both the host and guest ions accounts for the entropic gain in inclusion process of p-CH3-Ph-CO2- into the per-NH3+-beta-CD cavity. The fact that the neutral guests such as 2,6-dihydroxynaphthalene and p-methylbenzyl alcohol hardly form the complexes with per-NH3+-beta-CD exhibits that van der Waals and/or hydrophobic interactions do not cause the complexation of the polyvalent CD cation with the monovalent anion. The acetate anion is not included into the per-NH3+-beta-CD cavity, while the butanoate and hexanoate anions form the inclusion complexes. The complexation of the alkanoate anions is entropically dominated. Judging from these results, it may be concluded that Coulomb interactions cooperated with inclusion are required for realizing the large entropic gain due to extended dehydration. Entropically favorable complexation was also observed for the anionic CD-cationic guest system. The present study might present a general mechanism for ion pairing in water.     

Computational evidence for methyl-donated hydrogen bonds and hydrogen-bond networking in 1,2-ethanediol-dimethyl sulfoxide

The 1:1 complex of 1,2-ethanediol with dimethyl sulfoxide was studied using density functional theory. A network of three hydrogen bonds holds the complex together, including two in which each methyl group donates to the same hydroxyl oxygen. Four lines of evidence support the existence of methyl-donated hydrogen bonds. The interaction energy is 36 +/- 5 kJ/mol using Becke's three parameter hybrid theory with the 1991 nonlocal correlation functional of Perdew and Wang, and a moderately large basis set (B3PW91/6-311++G**//B3PW91/6-31+G**). To determine the energy of each hydrogen bond, a relaxed potential energy scan was performed in a smaller basis set to break the weaker hydrogen bonds by forced systematic rotation of the methyl groups. Two cross-checking analyses show cooperative effects that cause individual hydrogen bond energies in the network to be nonadditive. When one methyl hydrogen bond is broken, the remaining interactions stabilize the complex by storing an additional 2-3 kJ/mol. With all hydrogen bonds intact, the O[bond]H...O[bond]S hydrogen bond contributes 26 +/- 2 kJ/mol stability, and each weak methyl bond stores 5 +/- 2 kJ/mol.     

Ab initio study of complexes with two cations as N-H donors to F-: structures and spin-spin coupling constants across N-H-F hydrogen bonds

A systematic ab initio study has been carried out to determine the MP2/6-31+G(d,p) structures and EOM-CCSD coupling constants across N-H-F-H-N hydrogen bonds for a series of complexes F(H(3)NH)(2)(+), F(HNNH(2))(2)(+), F(H(2)CNH(2))(2)(+), F(HCNH)(2)(+), and F(FCNH)(2)(+). These complexes have hydrogen bonds with two equivalent N-H donors to F(-). As the basicity of the nitrogen donor decreases, the N-H distance increases and the N-H-F-H-N arrangement changes from linear to bent. As these changes occur and the hydrogen bonds between the ion pairs acquire increased proton-shared character, (2h)J(F)(-)(N) increases in absolute value and (1h)J(H)(-)(F) changes sign. F(H(3)NH)(2)(+) complexes were also optimized as a function of the N-H distance. As this distance increases and the N-H...F hydrogen bonds change from ion-pair to proton-shared to traditional F-H...N hydrogen bonds, (2h)J(F)(-)(N) initially increases and then decreases in absolute value, (1)J(N)(-)(H) decreases in absolute value, and (1h)J(H)(-)(F) changes sign. The signs and magnitudes of these coupling constants computed for F(H(3)NH)(2)(+) at short N-H distances are in agreement with the experimental signs and magnitudes determined for the F(collidineH)(2)(+) complex in solution. However, even when the N-H and F-H distances are taken from the optimized structure of F(collidineH)(2)(+), (2h)J(F)(-)(N) and (1h)J(H)(-)(F) are still too large relative to experiment. When the distances extracted from the experimental NMR data are used, there is excellent agreement between computed and experimental coupling constants. This suggests that the N-H-F hydrogen bonds in the isolated gas-phase F(collidineH)(2)(+) complex have too much proton-shared character relative to those that exist in solution.     

Infrared spectra of C(3)H(3)(+)-N(2) dimers: identification of proton-bound c-C(3)H(3)(+)-N(2) and H(2)CCCH(+)-N(2) isomers.

Mid-infrared photodissociation spectra of mass selected C(3)H(3)(+)-N(2) ionic complexes are obtained in the vicinity of the C-H stretch fundamentals (2970-3370 cm(-1)). The C(3)H(3)(+)-N(2) dimers are produced in an electron impact cluster ion source by supersonically expanding a gas mixture of allene, N(2), and Ar. Rovibrational analysis of the spectra demonstrates that (at least) two C(3)H(3)(+) isomers are produced in the employed ion source, namely the cyclopropenyl (c-C(3)H(3)(+)) and the propargyl (H(2)CCCH(+)) cations. This observation is the first spectroscopic detection of the important c-C(3)H(3)(+) ion in the gas phase. Both C(3)H(3)(+) cations form intermolecular proton bonds to the N(2) ligand with a linear -C-H...N-N configuration, leading to planar C(3)H(3)(+)-N(2) structures with C(2v) symmetry. The strongest absorption of the H(2)CCCH(+)-N(2) dimer in the spectral range investigated corresponds to the acetylenic C-H stretch fundamental (v(1) = 3139 cm(-1)), which experiences a large red shift upon N(2) complexation (Delta(v1) approximately -180 cm(-1)). For c-C(3)H(3)(+)-N(2), the strongly IR active degenerate antisymmetric stretch vibration (v4)) of c-C(3)H(3)(+) is split into two components upon complexation with N(2): v4)(a(1)) = 3094 cm(-1) and v4)(b(2)) = 3129 cm(-1). These values bracket the yet unknown v4) frequency of free c-C(3)H(3)(+) in the gas phase, which is estimated as 3125 +/- 4 cm(-1) by comparison with theoretical data. Analysis of the nuclear spin statistical weights and A rotational constants of H(2)CCCH(+)-N(2) and c-C(3)H(3)(+)-N(2) provide for the first time high-resolution spectroscopic evidence that H(2)CCCH(+) and c-C(3)H(3)(+) are planar ions with C(2v) and D(3h) symmetry, respectively. Ab initio calculations at the MP2(full)/6-311G(2df,2pd) level confirm the given assignments and predict intermolecular separations of R(e) = 2.1772 and 2.0916 A and binding energies of D(e) = 1227 and 1373 cm(-1) for the H-bound c-C(3)H(3)(+)-N(2) and H(2)CCCH(+)-N(2) dimers, respectively.     

Protonation of gas-phase aromatic molecules: IR spectrum of the fluoronium isomer of protonated fluorobenzene

The IR spectrum of the fluoronium isomer of protonated fluorobenzene (F-C(6)H(6)F(+), phenylfluoronium) is recorded in the vicinity of the C-H and F-H stretch fundamentals to obtain the first structured spectrum of an isolated protonated aromatic molecule in the gas phase. Stable F-C(6)H(6)F(+) ions are produced via proton transfer from CH(5)(+) to fluorobenzene (C(6)H(5)F) in a supersonic plasma expansion. The F-C(6)H(6)F(+) spectrum recorded between 2,540 and 4,050 cm(-1) is consistent with a weakly bound ion-dipole complex composed of HF and the phenyl cation, HF-C(6)H(5)(+). The strongest transition occurs at 3,645 cm(-1) and is assigned to the F-H stretch (sigma(FH)). The antisymmetric C-H stretch of the two ortho hydrogen atoms, sigma(CH) = 3,125 cm(-1), is nearly unshifted from bare C(6)H(5)(+), indicating that HF complexation has little influence on the C-H bond strength of C(6)H(5)(+). Despite the simultaneous production of the more stable ring protonated carbenium isomers of C(6)H(6)F(+) (fluorobenzenium) in the electron ionization source, F-C(6)H(6)F(+) can selectively be photodissociated into C(6)H(5)(+) and HF under the present experimental conditions, because it has a much lower dissociation energy than all carbenium isomers. Quantum chemical calculations at the B3LYP and MP2 levels of theory using the 6-311G(2df,2pd) basis support the interpretation of the experimental data and provide further details on structural, energetic, and vibrational properties of F-C(6)H(6)F(+), the carbenium isomers of C(6)H(6)F(+), and other weakly bound HF-C(6)H(5)(+) ion-dipole complexes. The dissociation energy of F-C(6)H(6)F(+) with respect to dehydrofluorination is calculated as D(0) = 4521 cm(-1) (approximately 54 kJ/mol). Analysis of the charge distribution in F-C(6)H(6)F(+) supports the notation of a HF-C(6)H(5)(+) ion-dipole complex, with nearly the whole positive charge of the added proton distributed over the C(6)H(5)(+) ring. As a result, protonation at the F atom strongly destabilizes the C-F bond in C(6)H(5)F.     

A molecular shuttle for driving a multilevel fluorescence switch

A [2]rotaxane-based molecular shuttle comprised a macrocycle mechanically interlocked to a chemical "dumbbell" has been prepared in high yields by a thermodynamically controlled, template-induced clipping procedure. This molecular shuttle has two different recognition sites, namely, -NH2 +- and amide, separated by a phenyl unit. The macrocycle exhibits high selectivity for the -NH2+- recognition sites in the protonated form through noncovalent interactions, which include 1) N+-H...O hydrogen bonds; 2) C-H...O interactions between the CH2NH2+CH2 protons on the thread and the oligo(ethylene glycol) unit in the macrocycle; 3) pi...pi stacking interaction between macrocycle and aromatic unit. Upon deprotonation of the [2]rotaxane the macrocycle glides to the amide recognition site due to the hydrogen bonds between the -CONH- group and the oligo(ethylene glycol) unit in the macrocycle. The deprotonation process requires about 10 equivalents of base (iPr2NEt) in polar acetone, while the amount of base is only 1.2 equivalents in apolar tetrachloroethane. Upon addition of Li+, the conformation of the [2]rotaxane was altered as a result of the collective interactions of 1) hydrogen bonds between pyridine nitrogen and amide hydrogen atoms; 2) coordination between the oligo(ethylene glycol) unit, amide oxygen atom and Li+ cation. Then, when Zn2+ ions are added, the macrocycle returns to the deprotonated -NH- recognition site owing to coordination of the macrocycle and -NH- from the axle with the Zn2+ ion. All the above-mentioned movement processes are reversible through the alternate addition of TFA/iPr2NEt, Li/[12]-crown-4 and Zn2+/ethylenediaminetetraacetate (EDTA), by virtue of hydrogen bonding and metal-ion complexation. Significantly, the three independent movement processes are all accompanied by fluorescent responses: 1) complete repression in the protonated form; 2) low-level expression in the deprotonated form; 3) medium-level expression following addition of Li+; 4) high-level expression on complexation with Zn2+.     

The complex formation of tetracyclohexylammonium C1-resorcinarene with various guests - an electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry study

The complex formation of a tetraammonium C1-resorcinarene (R+4HCl) was studied using electrospray ionization Fourier transform ion cyclotron resonance (ESI-FTICR) mass spectrometry. Although R+4HCl easily loses its counter ions in the ESI process, a neutral self-assembled structure with an intramolecular circular hydrogen-bonded 16-membered -N(+)-H ... X(-) ... H-N(+)- array with ammonium ion as the charge-giving species was observed in the gas phase. In addition to chloride, several other counter ions were also studied. The size and basicity of the counter ion as well as the size of the charge-giving cation strongly affected the gas-phase stability of the self-assembled system. H/D exchange experiments showed that the ammonium substituents in the apical position of R affect the hydrogen-bonding system in the resorcinarene. The complexation of the saturated dicarboxylic acids was found to depend on the length of the carbon chain. The rigidity of the molecular skeleton of the acid improved the complexation considerably. The orientation and position of the carboxylic groups also had an effect on the complexation and consequently enabled stereochemical differentiation of the acids. Mass spectrometric observations were supported by theoretical calculations.     

Tunable supramolecular synthons and versatile, water-soluble building blocks for crystal engineering:

It is shown that the water-soluble dicarboxylic cationic acid [(eta5-C5H4COOH)2Co(III)]+ (1) is an extremely versatile building block for the construction of organometallic crystalline edifices. Removal of one proton from 1 leads to formation of the neutral zwitterion [(eta5-C5H4COOH)(eta5-C5H4COO)Co(III)] (2), while further deprotonation leads to formation of the dicarboxylate monoanion [(eta5-C5H4COO)2Co(III)]- (3). Compounds 1. 2 and 3 possess different hydrogen-bonding capacity and participate in a variety of hydrogen-bonding networks. The cationic form 1 has been characterised as its [PF6]- and Cl- salts 1-[PF6] and 1-Cl.H2O, as well as in its co-crystal with urea, 1-Cl.3(NH2)2CO, and with the zwitterionic form 2, [(eta5-CH4COOH)(eta5-C5H4COO)Co(III)][(eta5-C5H4COOH)2Co(III)]+[PF6]-, 2.1-[PF6]. The neutral zwitterion 2 behaves as a supramolecular crown ether: it encapsulates the alkali cations K+, Rb+ and Cs+ as well as the ammonium cation NH4+ in cages sustained by O-H...O and C-H...O hydrogen bonds to form co-crystalline salts of the type 2(2)-M[PF6] (M = K, Rb, Cs) and 2(2)-[NH4][PF6]. The deprotonated acid 3 has been characterised as its Cs+ salt, Cs+-3.3H2O.     

Comparison of the performance of dispersion-corrected density functional theory for weak hydrogen bonds

Potential energy curves for five complexes with weak to medium strong hydrogen bonds have been computed with dispersion corrected DFT methods. The electronic density based vdW-DF2 and VV10 van der Waals density functionals have been tested, as well as an atom pair-wise correction method (DFT-D3). The short-range exchange-correlation components BLYP and rPW86-PBE together with the extended aug-cc-pVQZ basis sets have been employed. Reference data have been computed at the estimated CCSD(T)/CBS(aQ-a5) level of theory. The investigated systems are CH(4)·NH(3), Cl(3)CH·NH(3), NH(3)·NH(3), CH(3)F·C(2)H(2) and CH(3)F·H(2)O with binding energies ranging from -0.7 kcal mol(-1) to -5.5 kcal mol(-1). We find that all dispersion corrected methods perform reasonably well for these hydrogen bonds, but also observe distinct differences. The BLYP-D3 method provides the best results for three out of five systems. For the fluorinated complexes, the VV10 method gives remarkably good results. The vdW-DF2 method yields good interaction energies similar to the other methods (mean average deviation of 0.2-0.3 kcal mol(-1)), but fails to provide accurate equilibrium separations. Based on these results and previous experience with the computation of non-covalent interactions, for large-scale applications we can recommend DFT-D3 based structure optimizations with subsequent checking of interaction energies by single-point VV10 computations. Comparison of the DFT-D3 and VV10 results leads to the conclusion that the short-range exchange-correlation functional and not the dispersion correction mainly determines the achievable accuracy.     

Unimolecular reactivity of strong metal-cation complexes in the gas phase: ethylenediamine-Cu(+)

The gas-phase reactions between ethylenediamine (en) and Cu(+) have been investigated by means of mass spectrometry techniques. The MIKE spectrum reveals that the adduct ions [Cu(+)(H(2)NCH(2)CH(2)NH(2))] spontaneously decompose by loosing H(2), NH(3) and HCu, the loss of hydrogen being clearly dominant. The spectra of the fully C-deuterated species show the loss of HD, NH(3) and CuD but no losses of H(2), D(2), NH(2)D, NHD(2), ND(3) or CuH are observed. This clearly excludes hydrogen exchange between the methylene and the amino groups as possible mechanisms for the loss of ammonia. Conversely, methylene hydrogen atoms are clearly involved in the loss of molecular hydrogen. The structures and bonding characteristics of the Cu(+)(en) complexes as well as the different stationary points of the corresponding potential energy surface (PES) have been theoretically studied by DFT calculations carried out at B3LYP/6-311+G(2df,2p)//B3LYP/6-311G(d,p) level. Based on the topology of this PES the most plausible mechanisms for the aforementioned unimolecular fragmentations are proposed. Our theoretical estimates indicate that Cu(+) strongly binds to en, by forming a chelated structure in which Cu(+) is bridging between both amino groups. The binding energy is quite high (84 kcal mol(-1)), but also the products of the unimolecular decomposition of Cu(+)(en) complexes are strongly bound Cu(+)-complexes.