Synthesis,Structure and Properties of C(X)NHP(Y) Fragment Containing Compounds

Abstract

N-(thio)carbonyl(thio)amidophosphate, their open-chain and crown-containing analogues with a C (X) NHP (Y) fragments are associated with intermolecular hydrogen bonds as C=X…H-N and P=Y…H-N or intramolecular hydrogen bonds of N-H…O(macrocycle). These compounds easily enter into alkylation reaction, are added according to C=N bonds of activated imines, take part in O → S and S → O exchanging reactions.     

(CuI)3P4S4: preparation,structural, and NMR spectroscopic characterization of a copper(I) halide adduct with beta-P4S4

(CuI)(3)P(4)S(4) is obtained by reaction of stoichiometric amounts of CuI, P, and S in evacuated silica ampoules. The yellow compound consists of monomeric beta-P(4)S(4) cage molecules that are separated by hexagonal columns of CuI. (CuI)(3)P(4)S(4) crystallizes isotypic to (CuI)(3)P(4)Se(4) in the hexagonal system, space group P6(3)cm (no. 185) with a=19.082(3), c=6.691(1) A, V=2109.9(6) A(3), and Z=6. Three of the four phosphorus atoms are bonded to copper, whereas no bonds between copper and sulfur are observed. The two crystallographically distinct copper sites are clearly differentiated by (65)Cu magic-angle spinning (MAS) NMR spectroscopy. Furthermore, an unequivocal assignment of the (31)P MAS-NMR spectra is possible on the basis of homo- and heteronuclear dipole-dipole and scalar interactions. Dipolar coupling to the adjacent quadrupolar spins (63, 65)Cu generates a clear multiplet structure of the peaks attributable to P1 and P2, respectively. Furthermore, the utility of a newly developed two-dimensional NMR technique is illustrated to reveal direct connectivity between P atoms based on ((31)P-(31)P) scalar interactions.     

Accounting for the differences in the structures and relative energies of the highly homoatomic np pi-np pi (n > or = 3)-bonded S2I4 2+, the Se-I pi-bonded Se2I4 2+, and their higher-energy isomers by AIM, MO, NBO, and VB methodologies

The bonding in the highly homoatomic np pi-np pi (n > or = 3)-bonded S2I42+ (three sigma + two pi bonds), the Se-I pi-bonded Se2I42+ (four sigma + one pi bonds), and their higher-energy isomers have been studied using modern DFT and ab initio calculations and theoretical analysis methods: atoms in molecules (AIM), molecular orbital (MO), natural bond orbital (NBO), and valence bond (VB) analyses, giving their relative energies, theoretical bond orders, and atomic charges. The aim of this work was to seek theory-based answers to four main questions: (1) Are the previously proposed simple pi*-pi* bonding models valid for S2I42+ and Se2I42+? (2) What accounts for the difference in the structures of S2I42+ and Se2I42+? (3) Why are the classically bonded isolobal P2I4 and As2I4 structures not adopted? (4) Is the high experimentally observed S-S bond order supported by theoretical bond orders, and how does it relate to high bond orders between other heavier main group elements? The AIM analysis confirmed the high bond orders and established that the weak bonds observed in S2I42+ and Se2I42+ are real and the bonding in these cations is covalent in nature. The full MO analysis confirmed that S2I42+ contains three sigma and two pi bonds, that the positive charge is essentially equally distributed over all atoms, that the bonding between S2 and two I2+ units in S2I42+ is best described by two mutually perpendicular 4c2e pi*-pi* bonds, and that in Se2I42+, two SeI2+ moieties are joined by a 6c2e pi*-pi* bond, both in agreement with previously suggested models. The VB treatment provided a complementary approach to MO analysis and provided insight how the formation of the weak bonds affects the other bonds. The NBO analysis and the calculated AIM charges showed that the minimization of the electrostatic repulsion between EI2+ units (E = S, Se) and the delocalization of the positive charge are the main factors that explain why the nonclassical structures are favored for S2I42+ and Se2I42+. The difference in the structures of S2I42+ and Se2I42+ is related to the high strength of the S-S pi bond compared to the weak S-I sigma bond and the additional stabilization from increased delocalization of positive charge in the structure of S2I42+ compared to the structure of Se2I42+. The investigation of the E2X42+ series (E = S, Se, Te; X = Cl, Br, I) revealed that only S2I42+ adopts the highly np pi-np pi (n > or = 3)-bonded structure, while all other dications favor the pi-bonded Se2I42+ structure. Theoretical bond order calculations for S2I42+ confirm the previously presented experimentally based bond orders for S-S (2.1-2.3) and I-I (1.3-1.5) bonds. The S-S bond is determined to have the highest reported S-S bond order in an isolated compound and has a bond order that is either similar to or slightly less than the Si-Si bond order in the proposed triply bonded [(Me3Si)2CH]2(iPr)SiSi triple bond SiSi(iPr)[CH(SiMe3)2]2 depending on the definition of bond orders used.     

Zinc, cadmium, and mercury 1,2-benzenedithiolates with intramolecular NH...S hydrogen bonds

Mononuclear Zn, Cd, and Hg 1,2-benzenedithiolates with intramolecular NH...S hydrogen bonds, [M(II){1,2-S2-3,6-(RCONH)2C6H2}2](2-) (R = CH 3, t-Bu; M = Zn, Cd, Hg), were synthesized and characterized by X-ray analysis and spectral measurements. The presence of intramolecular NH...S hydrogen bonds was established by the IR spectra. (199)Hg and (113)Cd nuclear magnetic resonance showed a stabilized four-thiolate coordinated structure and suggested the influence of the NH...S hydrogen bonds to ppi(Hg)-ppi(S) interactions. The NH stretching bands show that the NH...S hydrogen bonds in Cd and Hg complexes are stronger than those in the corresponding Zn complex. These results are supported by theoretical calculations. The experimental and theoretical results suggested that the NH...S hydrogen bond influences the efficient capture of toxic Cd and Hg ions by metallothioneins.     

Fourier-transform infrared and Raman difference spectroscopy studies of the phosphorus-containing dendrimers

FT IR and Raman spectra of 12 generations of the phosphorus-containing starburst dendrimers containing P=S and P=O bonds with terminal aldehyde and P-Cl groups were compared. The influence of the encirclement on the band frequencies and intensity is studied and due to the predictable, controlled and reproducible structure of the dendrimers the information usually inaccessible is obtained. Bands in the IR difference (G2'(P=O)-G2'(P=S)) spectra have characteristic EPR-like form. The strong band at 1600 cm(-1) show marked changes of the optical density in dependence of the aldehyde (-CH=O) or azomethyne (-CH=N-) substituents in the aromatic ring. The analysis of difference spectra enables one to assign the characteristic bands nu(P=S) and nu(P=O) for the bonds in the core, in the repeating unit and in the terminal groups of the dendrimers. This assignment is supported by the calculation of the absorption curves of the different fragments of dendrimer with the force constants and electro-optical parameters. The IR and Raman spectra of dendrimers are depended on the ratio of number terminal groups to a number of repeating units, which in its turn is strictly determined by the generation number. Thus, the marked differences in the vibrational spectra of the first successive generations aspire to zero for the higher ones. The rather rigid repeated units with little conformational flexibility define the perfect microstructure of the studied phosphorus-containing dendrimers up to the eleventh generation.     

X-H (X = C, N, O, P, S) bond activations induced by beta-heterosubstituted zirconaindenes

The azazirconacyclopentene-substituted phosphines 3 and 4 have been found to activate the C-H bonds of acetylenic systems, such as methylpropiolate, diphenylphosphinoacetylene and phenylacetylene, or of methylene compounds, such as malonitrile and diethylmalonate, to give complexes 5a-c, 6a and 6b. C-H bond activation also takes place with vinylacetate. Similar reactions with amines, alcohols, enolisable ketones, phenols, phosphonates, thiols and a second-generation SH-terminated dendrimer lead through X-H bond activation (X = N, O, P, S) to new complexes 8a-c, 9, 12 a,b, 13, 14a-c, 15, 16a and 16b. The azazirconacyclopentene-substituted amine 20 reacts to form analogous complexes. Zr-X bonds of these complexes (X = C, N, O, S) can be cleaved with diphenylchlorophosphine to give P-X phosphorus derivatives in high yield.     

反式和顺式含磷稠环6,13-二硫丙基-5,12-二氧-6,13-二硫羰基-6a,7,13a,14-四氮-6,13-二磷杂二苯并(a,h)蒽烷的晶体结构

采用X射线分析测定了标题化合物的晶体结构和分子结构。化合物C_(20)H_(22)-O_2N_4P_2S4(1)为反式构型,M_r=540.63,正交晶系,空间群Pcab,a=7.255(2),b=18.297(3),c=18.576(2),V=2465.9 ~3,Z=4,D_c=1.456g/cm~(-3),最终偏离因子R=0.058,R_ω=0.049;化合物(2)为顺式构型,单斜晶系,空间群Ic,a=14.649(5),b=7.009(2),c=22.694(8),β=100.60(3)°,V=2290.1 ~3,Z=4,D_c=1.643g/cm~(-3),最终偏离因子R=0.061,R_ω=0.065。晶体结构测定结果表明,这对顺反异构体的构象明显不同:反式异构体的分子本身有对称中心且与晶体学对称中心重合,氧,氮,磷杂六员环为椅式构象,磷硫单键为轴向键,磷硫双键为平伏键;顺式异构体的分子本身无对称中心,两个氧氮磷杂六员环分别为椅式和船式构象,环上的磷硫单键为平伏键,磷硫双键为轴向键,与反式异构体恰恰相反。     

Synthesis and Crystal Structure of (2S,2'S,4'R)-2-(1-Hydroxy-1-ethylpropyl)-1-[(1'-p-tosyl-4'-hydroxypyrrolidin-2'-yl)methyl]pyrrolidine

1 INTRODUCTION In recent years, chiral β-amino alcohols have attracted much attention due to their special bio- logical functions and catalytic activities. Chiral β- amino alcohol moieties are usually found not only in natural products (e.g., cinchona alkaloids, ephe- drine, toxal, etc.) with special biological activities[1, 2], but also critical structural segments of some syn- thesized biologically active compounds, such as adrenergic agonists or antagolist[3, 4] and inhibitors for HI…     

Preparation and structural characterization of (Me(3)SiNSN)(2)Se, a new synthon for sulfur-selenium nitrides

The reaction of (Me(3)SiN)(2)S with SeCl(2) (2:1 ratio) in CH(2)Cl(2) at -70 degrees C provides a route to the novel mixed selenium-sulfur-nitrogen compound (Me(3)SiNSN)(2)Se (1). Crystals of 1 are monoclinic and belong the space group P2(1)/c, with a = 7.236(1) A, b = 19.260(4) A, c = 11.436(2) A, beta = 92.05(3) degrees, V = 1592.7(5) A(3), Z = 4, and T = -155(2) degrees C. The NSNSeNSN chain in 1 consists of Se-N single bonds (1.844(3) A) and S=N double bonds (1.521(3)-1.548(3) A) with syn and anti geometry at the N=S=N units. The N-Se-N bond angle is 91.8(1) degrees. The EI mass spectrum shows a molecular ion with good agreement between the observed and calculated isotopic distributions. The (14)N NMR spectrum exhibits two resonances at -65 and -77 ppm. Both (13)C and (77)Se NMR spectra show single resonances at 0.83 and 1433 ppm, respectively. The reaction of 1 with an equimolar amount of SeCl(2) produces 1,5-Se(2)S(2)N(4) (2) in a good yield, and that of (Me(3)SiNSN)(2)S with SCl(2) affords S(4)N(4) (3), but the reactions of (Me(3)SiNSN)(2)Se with SCl(2) and (Me(3)SiNSN)(2)S with SeCl(2) result in the formation of a mixture of 2 and 3. A likely reaction pathway involves the intermediate formation of E(2)N(2) fragments (E = S, Se).     

THE CRYSTAL STRUCTURE OF TR1S (μ-SULFJDO)-(U3-SULFJDO)-TETRAKTS (O,O-DIETHYLPHOSPHORODITHIOATO-S,S)-OXAZOLE-TRI-MOLYBDENUM-ANTIMONOUSCHLORID {Mo_3(U3-S)[u-S)_3·SbCl_3][S_2P(OEt)_2]_4·(C_3H_3ON)}

<正> Mr = 1445.67, triclinic. The space group is P1 with the unit cell parameters: a = 10.342(3), b = 11.994(3), c = 21.352(4) A; (?)= 76.27(2), β - 88.55(2)°, r = 73.26(2)°; V = 246lA3, Z = 2, DC = 1.959 g.cm-3. The final R factor is 0.068 based on 4053 reflectioons with I≥3(?)(Ⅰ). The title compound may be regarded as the result of that a molecule of trinuclear Mo cluster {Mo3S4[S2P(OEt)2]4·(C3H3ON)}[1] connects with a molecule of SbCl3 by three bridging S atoms. The skeleton {Mo3SbS4} is a distorted cube. The distances of Mo-Mo bonds are 2.728(2), 2,743(2) and 2.751(2) A, respectively, and the distances between Sb and Mo atoms are 3.814(2), 3.815(2) and 3.847(2) A, respectively.     

Synthesis, Crystal Structure and Spectrometry Study of Chiral N-Ethyl-N''''-(2'''',3'''',4'''',6''''-tetra-O-acetyl-β-D-glycosyl)-thiocarbamide

1INTRODUCTIONManynomadicsugarsperformimportantbio-logicalfunctions[1].Theycancontrolvariousgeneexpressionstoadjusttheupgrowth,developmentandreactionoforgans[2].Glycosylisothiocyanateshavebeenwidelyusedasvaluableintermediatesinthesynthesisofglycosylderivatives[3].Theiso-thiocyanatesandglycosylisothiocyanateshavebeenthefocusofsyntheticattentionduringrecentyearsbecauseoftheirpotentialpharmacologicalproperties[4].Theyhavealsoattractedconsiderableinterestduetotheanti-HIVactivityshownby1-deoxy…     

Synthesis and Crystal Structure of Dehydroandrographolide Dipolycyclophosphate

1 INTRODUCTION Andrographolide 1 is the major labdane diter- penoidal constituent of Andrographis panicutate (Burm) Nees used extensively in the traditional Chinese and Indian medicine, and reported to exhibit a wide spectrum of biological activities such as anti- inflammatory[1～3], anti-allergic[4, 5], anti-platelet aggregation[6], hepatoprotective[7, 8] and anti-human immunodeficiency virus (HIV) activities[9, 10]. Addi- tionally due to the wide applications in clinic for the treat…     

Comparison between Hydrogen and Halogen Bonds in Complexes of 6-OX-Fulvene with Pnicogen and Chalcogen Electron Donors

Quantum chemical calculations are applied to complexes of 6-OX-fulvene (X=H, Cl, Br, I) with ZH₃/H₂Y (Z=N, P, As, Sb; Y=O, S, Se, Te) to study the competition between the hydrogen bond and the halogen bond. The H-bond weakens as the base atom grows in size and the associated negative electrostatic potential on the Lewis base atom diminishes. The pattern for the halogen bonds is more complicated. In most cases, the halogen bond is stronger for the heavier halogen atom, and pnicogen electron donors are more strongly bound than chalcogen. Halogen bonds to chalcogen atoms strengthen in the order O<S<Se<Te, whereas the pattern is murkier for the pnicogen donors. In terms of competition, most halogen bonds to pnicogen donors are stronger than their H-bond analogues, but there is no clear pattern with respect to chalcogen donors. O prefers a H-bond, while halogen bonds are favored by Te. For S and Se, I-bonds are strongest, followed Br, H, and Cl-bonds in that order.     

含杂三元环化合物键强变化规律

用键强参数f~i, ~A~-B, f~A~-~B可定量地表达含杂三元环化合物CH2-CH2-X(X=Be, BH, CH2, NH, O及S)中成键情况及键强变化规律: 1. 无论在三元环中, 还是在C-X-C中, X=Be→O时, f~c~-~x随X中重原子的核电荷数Z递增而增大。其原因: X中重原子实对于价电子的有效核电荷数随其核电荷数Z的增大而增大。C-X的"键电荷"也随X的Z值递增。2. 当X=Be→O, 在形成CH2-CH2-X时, 较强键被削弱, 较弱键则增强, 致环内各-键键强和键长都有平均化的趋势。其原因为: 三元环分子中形成σ共轭的三中心键, C-X与C-C键共享"键电荷"。这种"σ-共轭效应"与π-共轭效应有相似处。3.由于硫的价电子云平均半径较大, 可向c-C提供更多共享电荷, 故在含S三元环化合物CH2-CH2-S中C-S键受到更大程度的削弱, C-C则更被增强。     

Doping Sumanene with Both Chalcogens and Phosphorus(V): One‐Step Synthesis,Coordination, and Selective Response Toward AgI

Heterasumanenes 4 – 6 containing chalcogen (S, Se, and Te) and phosphorus atoms have been synthesized in a one‐pot reaction from trichalcogenasumanenes 1 – 3 by replacing one chalcogen atom with a P=S unit. The P=S unit makes 4 – 6 almost planar and shrinks the HOMO–LUMO gap as compared to 1 – 3 . The bonding between Ag⁺ and S atom on P=S brings about a distinct change to the optical properties of 4 – 6 ; 4 in particular shows a selective fluorescence response toward Ag⁺ with LOD of 0.21 μm . Compounds 4 – 6 form complexes with AgNO₃ to be ( 4 )₂?AgNO₃, ( 5 )₂?AgNO₃, and ( 6 )₂?(AgNO₃)₃. In complexes, the coordination between Ag⁺ and P=S is observed, which leads to shrinkage of C?P and C?X (X=S, Se, Te) bond lengths. As a result, 4 , 5 , and 6 are all bowl‐shaped in complexes with bowl‐depths reaching to 0.66 Å, 0.42 Å, and 0.40 Å, respectively. There are Ag?Te dative bonds between Ag⁺ and Te atom on telluorophene in ( 6 )₂?(AgNO₃)₃.     

Relationship between force constants and bond lengths for CX (X = C, Si, Ge, N, P, As, O, S, Se, F, Cl and Br) single and multiple bonds: formulation of Badger's rule for universal use

Geometries and harmonic vibrational wave numbers were calculated on a series of simple compounds that contain the atoms of elements in the groups 14-17 by density functional theory at the B3LYP/6-311++G(3df,2pd) level. The calculated wave numbers agree well with the observed harmonic wave numbers with substantially the same accuracy for the compounds of the different groups. The stretching force constants of the CX (X = C, Si, Ge, N, P, As, O, S, Se, F, Cl and Br) single and multiple bonds were obtained. The CX stretching force constants increase with a decrease of the bond lengths as the element X in the same period goes from left to right in the periodic table. The individual intrinsic properties of the CX bonds are lost gradually with increasing the period of the element X. The unified interpretation of Badger's rule has enabled the formulation of a common equation for universal use f = 2.8 R(-3) to relate the force constants f (10(2) N m(-1)) and the reduced bond lengths R (10(-10) m).     

[Bu~4N]~3[Mo~2FeS~8O].(CH~2OH)~2簇合物的合成, 结构和性质研究

(NH4)2MoS~4、FeCl~3与乙二醇钠在乙二醇溶液中反应, 再与Bu~4NBr作用可得到一种M0-Fe-S簇合物[Bu~4N]~3[Mo~2FeS~8O].HOCH~2OH。其结构经X光晶体结构分析确定。并测定其红外光谱、紫外光谱、Mossbauer谱和电化学性质。该化合物可催化KBH~4转化乙炔还原为乙烯的反应。     

Stereoelectronic effects in cyclic sulfoxides, sulfones, and sulfilimines: application of the Perlin effect to conformational analysis

The 1JC--H coupling constants in conformationally constrained sulfoxides, bissulfoxides, sulfoxide-sulfones, and sulfilimines derived from 2-benzylidene-1,3-dithiane and 2-(2,2-dimethylpropylidene)-1,3-dithiolane were measured by means of HMQC and HSQC NMR experiments and the Perlin effects were calculated. The type and the relative configuration of S==X groups (X= O, NTos) in these compounds have a strong influence on the magnitude of coupling constants for axial and equatorial C--H bonds, respectively. Axial S==O bonds give rise to a stereoelectronic effect on antiperiplanar axial C--H bonds. The resultant weakening of the respective C--H bonds leads to a smaller coupling constant than for a respective equatorial C--H bond. Equatorial S==O groups have an influence on beta-C--H bonds through a homoanomeric effect. Here, the axial C--H bond is weakened and a smaller coupling constant is measured. Sulfilimine groups show similar effects to sulfoxide groups.     

Doping Sumanene with Both Chalcogens and Phosphorus(V): One‐Step Synthesis,Coordination, and Selective Response Toward AgI

Heterasumanenes 4 – 6 containing chalcogen (S, Se, and Te) and phosphorus atoms have been synthesized in a one‐pot reaction from trichalcogenasumanenes 1 – 3 by replacing one chalcogen atom with a P=S unit. The P=S unit makes 4 – 6 almost planar and shrinks the HOMO–LUMO gap as compared to 1 – 3 . The bonding between Ag⁺ and S atom on P=S brings about a distinct change to the optical properties of 4 – 6 ; 4 in particular shows a selective fluorescence response toward Ag⁺ with LOD of 0.21 μm . Compounds 4 – 6 form complexes with AgNO₃ to be ( 4 )₂?AgNO₃, ( 5 )₂?AgNO₃, and ( 6 )₂?(AgNO₃)₃. In complexes, the coordination between Ag⁺ and P=S is observed, which leads to shrinkage of C?P and C?X (X=S, Se, Te) bond lengths. As a result, 4 , 5 , and 6 are all bowl‐shaped in complexes with bowl‐depths reaching to 0.66 Å, 0.42 Å, and 0.40 Å, respectively. There are Ag?Te dative bonds between Ag⁺ and Te atom on telluorophene in ( 6 )₂?(AgNO₃)₃.     

pi bonding in second and third row molecules: testing the strength of Linus's blanket

The flexibility of valence bond (VB) theory provides a new method of calculating pi-bond energies in the double-bonded species H(m)A=BH(n), where A, B = C, N, O, Si, P, S. This new method circumvents the problems usually associated with obtaining pi-bond strengths by targeting only the pi bond, while all other factors remain constant. In this manner, a clean separation between sigma- and pi effects can be achieved which highlights some expected trends in bond strength upon moving from left to right and up and down the Periodic Table. Intra-row pi bonds conform to the classic statement by Pauling [L. Pauling, The Natiure of the Chemical Bond, Cornell University Press, Ithaca, 1960, 3rd edition] regarding the relationship of heteronuclear bond strengths to their homonuclear constituents whereas inter-row pi bonds do not. This variance with Pauling's statement is shown to be due to the constraining effect of the underlying sigma bonds which prevents optimal p(pi)-p(pi) overlap. While Pauling's statement was based on the assumption that the resonance energy (RE) would be large for heteronuclear and small for homonuclear bonds, we have found large REs for all bonds studied herein; this leads to the conclusion that REs are dependent not only on the electronegativity difference but also the electronegativity sum of the constituent atoms. This situation where the bond is neither covalent nor ionic but originates in the covalent-ionic mixing has been termed charge shift (CS) bonding [S. Shaik, P. Maitre, G. Sini, P. C. Hiberty, J. Am. Chem. Soc. 1992, 114, 7861]. We have shown that CS bonding extends beyond single sigma bonds in first row molecules, thus supporting the idea that CS-bonding is a ubiquitous bonding form.