Chemistry of dioxine-annelated cycloheptatriene endoperoxides and their conversion into tropolone derivatives: an unusual non-benzenoid singlet oxygen source

The chemistry of two bicyclic endoperoxides, obtained by photooxygenation of 2,3-dihydro-7H-cyclohepta[1,4]dioxine and 2,3-dihydro-7H-cyclohepta[b][1,4]dioxin-7-one was investigated with the aim of synthesizing the respective tropolone derivatives. The reaction of these endoperoxides with base, thiourea and their thermolysis provided the desired tropolone derivatives in high yield. On the other hand, the thermolysis of the endoperoxide derived from 2,3-dihydro-7H-cyclohepta[b][1,4]dioxin-7-one underwent an unprecedented route and formed parent molecule and singlet oxygen instead of the expected troponoids. The formation mechanisms of all products are discussed.     

Reactive molecular dynamics study on the first steps of DNA damage by free hydroxyl radicals

We employ a large scale molecular simulation based on bond-order ReaxFF to simulate the chemical reaction and study the damage to a large fragment of DNA molecule in the solution by ionizing radiation. We illustrate that the randomly distributed clusters of diatomic OH radicals that are primary products of megavoltage ionizing radiation in water-based systems are the main source of hydrogen abstraction as well as formation of carbonyl and hydroxyl groups in the sugar moiety that create holes in the sugar rings. These holes grow up slowly between DNA bases and DNA backbone, and the damage collectively propagates to a DNA single and double strand break.     

Studies on the reaction of p-hydroxybenzyl alcohol and hydroxyl radicals

The reaction of p-hydroxybenzyl alcohol and hydroxyl radicals generated by the Fenton reaction is studied. The products of the reaction are separated and identified by high-performance liquid chromatography (HPLC)-diode-array detection and HPLC-mass spectrometry. According to the structures of the products, a mechanism of the reaction is proposed.     

Products of the reaction of hydroxyl radicals with trans-2-butene in the presence of oxygen and nitrogen dioxide

The reactions of hydroxy-substituted alkyl radicals, formed as secondary products in the reaction of ozone with trans-2-butene, have been identified in photoionization mass spectrometry studies, using acetaldehyde and nitrogen dioxide as free-radical scavengers. Products derived from 2-hydroxy-1-methylpropl in the absence of scavengers include 2,3-butanedione (diacetyl), 3-hydroxy-2-butanone (acetoin),and 2,3-butanediol. In the presence of added acetaldehyde or nitrogen dioxide, the formation of these products is suppressed. In addition, with added nitrogen dioxide, new products are formed which have been identified as a series of oxoalkyl and hydroxy-substituted-alkyl nitrates and peroxynitrates. These observations may have an important bearing on the chemistry of photochemical smog.     

Photogeneration of the free radicals and singlet oxygen by chrysophanol from rheum

Chrysophanol (3-methyl-1,8-dihydroxyanthraqui-none) belongs to a family of anthraquinone pigmentsthat naturally exist in many kinds of plants, such asrheum, a Chinese herbal medicine growing abundantlyin China. Besides their biological activities, thesepigments are also well known as photosensitizers[1,2].Photosensitizers are able to photochemically producehighly reactive species, such as O2, O2 , ?OH, and 1 ??induce a series of damage to biologic…     

Approximate analytic solution for the dissociation of molecular iodine in the presence of singlet oxygen

A computational study including sensitivity, nondimensional, and stedy-state analyses of the gas-phase kinetics associated with Chemical Oxygen-Iodine Lasers (COIL) was performed to develop a simplified kinetic model and assess kinetic limitations to laser performance. A minimal set of 13 reactions is developed that adequately describes the time evolution of the major chemical constituents of a COIL device. A characteristic time for the dissociation of molecular iodine by singlet oxygen is established in terms of iodine fraction, water content, yield of singlet oxygen, and rate parameters. Finally, an approximate analytic solution to the iodine dissociation problem is established for a broad range of reagent concentrations. The current study is limited in applicability due to the exclusion of chemical heat release and reactive mixing phenomenon. © 1995 John Wiley & Sons, Inc.     

Theoretical study on the mechanism and kinetics of addition of hydroxyl radicals to fluorobenzene

Geometries, frequencies, reaction barriers, and reaction rates were calculated for the addition of OH radical to fluorobenzene using Möller–Plesset second‐order perturbation (MP2) and G3 methods. Four stationary points were found along each reaction path: reactants, prereaction complex, transition state, and product. A potential for association of OH radical and fluorobenzene into prereaction complex was calculated, and the associated transition state was determined for the first time. G3 calculations give higher reaction barriers than MP2, but also a significantly deeper prereaction complex minimum. The rate constants, calculated with Rice–Ramsperger–Kassel–Marcus (RRKM) theory using G3 energies, are much faster and in much better agreement with the experiment than those calculated with MP2 method, as the deeper well favors the formation of prereaction complex and also increases the final relative populations of adducts. The discrepancies between the experimental and calculated rate constants are attributed to the errors in calculated frequencies as well as to the overestimated G3 reaction barriers and underestimated prereaction complex well depth. It was possible to rectify those errors and to reproduce the experimental reaction rates in the temperature range 230–310 K by treating the relative translation of OH radical and fluorobenzene as a two‐dimensional particle‐in‐the‐box approximation and by downshifting the prereaction complex well and reaction barriers by 0.7 kcal mol^?1. The isomeric distribution of fluorohydroxycyclohexadienyl radicals is calculated from the reaction rates to be 30.9% ortho, 22.6% meta, 38.4% para, and 8.3% ipso. These results are in agreement with experiment that also shows dominance of ortho and para channels. © 2012 Wiley Periodicals, Inc.     

Reactions of oxygen free radicals with copper complexes in pyridine: differentiation between superoxide and hydroxyl radicals

Superoxide radicals are generated in tetraalkylammonium hydroxide-pyridine-H₂O₂ and detected by spin trapping and by reduction of nitroblue tetrazolium. The addition of low-molecular-weight copper complexes (e.g., of anti-inflammatory drugs) decreases the concentration of superoxide. Depending on the solvent, different oxygen radicals are generated by the addition of hydrogen peroxide to solutions of the copper complexes; hydroxyl radicals are observed in aqueous solutions whereas superoxide is found in pyridine.     

Effects of the interaction between beta-carboline-3-carboxylic acid N-methylamide and polynucleotides on singlet oxygen quantum yield and DNA oxidative damage

The complexation of beta-carboline-3-carboxylic acid N-methylamide (betaCMAM) with the sodium salts of the nucleotides polyadenylic (Poly A), polycytidylic (Poly C), polyguanylic (Poly G), polythymidylic (Poly T) and polyuridylic (Poly U) acids, and with double stranded (dsDNA) and single stranded deoxyribonucleic acids (ssDNA) was studied at pH 4, 6 and 9. Predominant 1:1 complex formation is indicated from Job plots. Association constants were determined using the Benesi-Hildebrand equation. BetaCMAM-sensitized singlet oxygen quantum yields were determined at pH 4, 6 and 9, and the effects on this of adding oligonucleotides, dsDNA and ssDNA were studied at the three pH values. With dsDNA, the effect on betaCMAM triplet state formation was also determined through triplet-triplet transient absorption spectra. To evaluate possible oxidative damage of DNA following singlet oxygen betaCMAM photosensitization, we used thiobarbituric acid-reactivity assays and electrophoretic separation of DNA assays. The results showed no oxidative damage at the level of DNA degradation or strand break.     

Direct visualization of enzymatic cleavage and oxidative damage by hydroxyl radicals of single-stranded DNA with a cationic polythiophene derivative

A new method has been developed for the label-free, convenient, and real-time monitoring of the cleavage of single-stranded DNA by single-strand-specific S1 nuclease and hydroxyl radical based on cationic water-soluble poly[3-(3'-N,N,N-triethylamino-1'-propyloxy)-4-methyl-2,5-thiophene hydrochloride](PMNT). The PMNT can form an interpolyelectrolyte complex with ssDNA (duplex) through electrostatic interactions, in which PMNT takes a highly conjugated and planar conformation, and thus PMNT exhibits a relatively red-shifted absorption wavelength. When ssDNA is hydrolyzed by S1 nuclease or hydroxyl radical into small fragments, the PMNT/ssDNA duplex cannot form. In this case, the PMNT remains in random-coil conformation and exhibits a relatively short absorption wavelength. The nuclease digestion or oxidative damage by hydroxyl radical of DNA can be monitored by absorption spectra or just visualized by the "naked-eye" in view of the observed PMNT color changes in aqueous solutions. This assay is simple and rapid, and there is no need to label DNA substrates. The most important characteristic of the assay is direct visualization of the DNA cleavage by the "naked-eye", which makes it more convenient than other methods that rely on instrumentation. The assay also provides a promising application in drug screening based on the inhibition of oxidative damage of DNA.     

Photoinduced superoxide radical anion and singlet oxygen generation in the presence of novel selenadiazoloquinolones (an EPR Study)

Novel 7‐substituted 6‐oxo‐6,9‐dihydro[1,2,5]selenadiazolo[3,4‐h]quinoline ( SeQ(1–6) ) and 8‐substituted 9‐oxo‐6,9‐dihydro[1,2,5]selenadiazolo[3,4‐f ]quinoline derivatives ( SeQN(1–5) ) with R₇, R₈ = H, COOC₂H₅, COOCH₃, COOH, COCH₃ or CN were synthesized and their spectral characteristics were obtained by UV/Vis spectroscopy. Ultraviolet A photoexcitation of the selenadiazoloquinolones in dimethylsulfoxide or acetonitrile resulted in the formation of paramagnetic species coupled with molecular oxygen activation generating the superoxide radical anion or singlet oxygen, evidenced by electron paramagnetic resonance spectroscopy. The cytotoxic/photocytotoxic impact of selenadiazoloquinolones on murine and human cancer cell lines was demonstrated using the derivative SeQ5 (with R₇ = COCH₃).     

The heterogeneous catalytic oxidation of propylene in the presence of singlet oxygen in the reaction mixture

Three methods for the introduction of singlet oxygen into the reaction mixture were tested, including thermal generation of singlet oxygen on the catalyst itself, the introduction of singlet oxygen from an external source, and photogeneration of singlet oxygen on the catalyst. Zeolites with admixtures of Mo, Bi, V, and Ni and SiO₂ with deposited Mo, V, and Bi were used. Common to all reactions was an increase in the yield of deep oxidation products in the presence of singlet oxygen. A sharp increase in the yield of mild oxidation products was observed in the oxidation of propylene on a Bi/SiO₂ catalyst. The generation of singlet oxygen under irradiation at 240–260 nm was found to cause deep oxidation only. Mild oxidation products could only form under the action of total mercury lamp light.     

Studies on the photooxidation mechanism of polymers. V. Oxidation of polybutadienes by singlet oxygen from microwave discharge and in dye-photosensitized reactions

The singlet oxygen oxidation of cis- and trans- 1,4-polybutadienes was studied by using singlet oxygen generated in a microwave generator and in dye-photosensitized reactions of these polymers in the solid state and in solution. It was shown that the reactions of singlet oxygen result in formation of hydroperoxide groups, whereas ultraviolet oxidation by molecular oxygen in addition leads to formation of carbonyl groups. During dye-photosensitized oxidation of polydienes in benzene solution, a very rapid decrease in the molecular weight was observed.     

The roles of hydroxyl radicals, photo-generated holes and oxygen in the photocatalytic degradation of humic acid

This article is aimed at studying on the roles of the hydroxyl radicals, photo-generated holes, and oxygen in the photocatalytic degradation of humic acid (HA) in acid and alkaline conditions. The results indicate that hydroxyl radicals?? scavenger alone can inhibit the photocatalytic degradation process completely in alkaline condition, which implies that photo-generated holes cannot directly degrade the organic matter in alkaline condition. Moreover, the reaction sites between hydroxyl radicals and HA is on the TiO₂ surface in acid condition. But in alkaline condition, hydroxyl radicals diffuse and react with HA in the solution. The generation of hydroxyl radicals almost stops and the photocatalytic degradation is inhibited seriously without oxygen, which illustrates that oxygen plays an important role in the photocatalytic degradation of HA.     

Polar and solvation effects in reactions of oxygen atoms and hydroxyl and alkoxyl radicals with oxygen-containing compounds

Experimental data on the activation energies of reactions of H-abstraction from oxygencontaining compounds by oxygen atoms and hydroxyl and alkoxyl radicals in the gas and liquid phases have been analyzed by means of the parabolic model of the transition state. The contribution of polar interaction to the activation energies of the reactions has been calculated. The contribution of solvation to the activation energy has been calculated by comparison of the reaction parameters of the respective reaction in the liquid and gas phases.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 38–42, January, 1994.