Synthesis of nucleoside aminooxy acids

First nucleoside aminooxy acids were synthesized from furanoid sugar phthalimidooxy acids by N-glycosylation with uracil, thymine, N-benzoylcytosine, 6-N-benzoyladenine and 2-N-acetyl-6-O-diphenylcarbamoylguanine. Boc or Fmoc protected uridine aminooxy acid derivatives have also been prepared. As oxyamine protecting group, the phthalimido group was shown to be instable in MeOH, leading to the imide ring-opening product in a reversible way. This reaction was accelerated under acid or basic conditions. A uridine dimer linked by N-oxy amide has also been prepared by coupling of uridine aminooxy ester with uridine phthalimidooxy acid. These nucleoside aminooxy acids might constitute useful building blocks for the development of novel RNA mimics and conjugates with other biomolecules or reporter compounds.     

An electrochemical immunosensor based on covalent immobilization of okadaic acid onto screen printed carbon electrode via diazotization-coupling reaction

In this work, an electrochemical method based on the diazonium-coupling reaction mechanism for the immobilization of okadaic acid (OA) on screen printed carbon electrode was developed. At first, 4-carboxyphenyl film was grafted by electrochemical reduction of 4-carboxyphenyl diazonium salt, followed by terminal carboxylic group activation by N-hydroxysuccinimide (NHS), N-(3-dimethylaminopropyle)-N′-ethyle-carbodiimide hydrochloride (EDC). Hexamethyldiamine was then covalently bound by one of its terminal amine group to the activated carboxylic group. The carboxyl group of okadaic acid was activated by EDC/NHS and then conjugated to the second terminal amine group on other side of the hexamethyldiamine through amide bond formation. After immobilization of OA, an indirect competitive immunoassay format was employed to detect OA. The immunosensor obtained using this novel approach allowed detection limit of 1.44 ng/L of OA, and was also validated with certified reference mussel samples.     

Ethoxyethylidene protecting group prevents N-overacylation in aminooxy peptide synthesis

We report herein an improved synthetic route for the preparation of homogenous aminooxy peptides suitable for oxime ligation. Aminooxyacetic acid (Aoa) was protected with 1-ethoxyethylidene group (Eei) then incorporated either using PyBOP or as N-hydroxysuccinimidyl ester at N-terminal end or at a lysine side chain into model peptides in solution and on solid support. Due to the Eei protecting group, these new reagents prevent the N-overacylation side reaction in comparison with Boc-Aoa derivatives. Subsequent deprotection under mild acidic conditions gave the corresponding pure aminooxylated peptides.     

One-pot solid-phase glycoblotting and probing by transoximization for high-throughput glycomics and glycoproteomics

The development of rapid and efficient methods for high-throughput protein glycomics is of growing importance because the glycoform-focused reverse proteomics/genomics strategy will greatly contribute to the discovery of novel biomarkers closely related to cellular development, differentiation, growth, and aging as well as a variety of diseases such as cancers and viral infection. Recently, we communicated that rapid and efficient purification of carbohydrates can be achieved by employing sugar-specific chemical ligation with aminooxy-functionalized polymers, which we termed "glycoblotting" (see S.-I. Nishimura et al., Angew. Chem. 2005, 117, 93-98; Angew. Chem. Int. Ed. 2005, 44, 91-96). The chemoselective blotting of oligosaccharides present in crude biological materials onto synthetic polymers relies on the unique oxime-bond formation between aminooxy group displayed on the supporting materials and aldehyde/ketone group at the reducing terminal of all oligosaccharides, thus enabling highly selective and rapid oligosaccharide purification. Aiming to improve the detection sensitivity of the released oligosaccharides, we introduce here a novel strategy for one-pot solid-phase glycoblotting and probing by transoximization. We found that oligosaccharides captured by the polymer supports via the oxime bond can be released in the presence of excess O-substituted aminooxy derivatives in a weakly acidic condition. The released oligosaccharides could be recovered as newly formed oxime derivatives of the O-substituted aminooxy compound added, thus demonstrating the simultaneous releasing and probing. In addition, we synthesized a novel aminooxy-functionalized monomer, N-[2-[2-(2-tert-butoxycarbonylaminooxyacetylamino-ethoxy)ethoxy]ethyl]-2-methacrylamide, which allows for the large-scale preparation of a versatile polymer characterized by its high stability, high blotting capacity, and easy use. The one-pot protocol allowed to profile 23 kinds of N-glycan chains of human serum glycoproteins. This concept was further applied for the glycopeptides analysis in a crude mixture followed by galactose oxidase treatment to generate free aldehyde group at the non-reducing terminal of oligosaccharide moiety of glycopeptides. Our technique may be implemented in existing biochemistry and molecular diagnostics laboratories because enriched oligosaccharides and glycopeptides by solid-phase transoximization with high-sensitive labeling reagents are widely applicable in a variety of common analytical methods using two-dimensional HPLC, LC/MS, and capillary electrophoresis as well as modern mass spectrometry.     

Functionalisation of free amino groups of lysine dendrigraft (DGL) polymers

Lysine dendrigraft polymers (DGL) are promising candidates as carriers for targeted drug/gene delivery and bio-imaging, as such deserving extensive chemical functionalisation studies. We describe here examples of complete grafting of DGL amino groups by various substituents: hydrophobic amino acids (Ala, Val, Leu), dicarboxylic acids (succinic, Asp), guanidyl and saccharides (Gal), by means of straightforward coupling reactions, thus opening to versatile tuning of DGL properties (hydrophobicity, nucleophilicity, electric charge…). DGL functionalisation by lactose (when carried out so as to avoid borate ester formation between sugars) however yields partially grafted DGL; besides, partial grafting can be achieved by tuning the reagent/DGL stoichiometric ratio.     

An Expeditious Multigram‐Scale Synthesis of Lysine Dendrigraft (DGL) Polymers by Aqueous N‐Carboxyanhydride Polycondensation

The synthesis and characterisation of new arborescent architectures of poly(L ‐lysine), called lysine dendrigraft (DGL) polymers, are described. DGL polymers were prepared through a multiple‐generation scheme (up to generation 5) in a weakly acidic aqueous medium by polycondensing N^ε‐trifluoroacetyl‐L ‐lysine‐N‐carboxyanhydride (Lys(Tfa)‐NCA) onto the previous generation G(n?1) of DGL, which was used as a macroinitiator. The first generation employed spontaneous NCA polycondensation in water without a macroinitiator; this afforded low‐molecular‐weight, linear poly(L ‐lysine) G1 with a polymerisation degree of 8 and a polydispersity index of 1.2. The spontaneous precipitation of the growing N^ε‐Tfa‐protected polymer (GnP) ensures moderate control of the molecular weight (with unimodal distribution) and easy work‐up. The subsequent alkaline removal of Tfa protecting groups afforded generation Gn of DGL as a free form (with 35–60 % overall yield from NCA precursor, depending on the DGL generation) that was either used directly in the synthesis of the next generation (G(n+1)) or collected for other uses. Unprotected forms of DGL G1–G5 were characterised by size‐exclusion chromatography, capillary electrophoresis and ¹H NMR spectroscopy. The latter technique allowed us to assess the branching density of DGL, the degree of which (ca. 25 %) turned out to be intermediate between previously described dendritic graft poly(L ‐lysines) and lysine dendrimers. An optimised monomer (NCA) versus macroinitiator (DGL G(n?1)) ratio allowed us to obtain unimodal molecular weight distributions with polydispersity indexes ranging from 1.3 to 1.5. Together with the possibility of reaching high molecular weights (with a polymerisation degree of ca. 1000 for G5) within a few synthetic steps, this synthetic route to DGL provides an easy, cost‐efficient, multigram‐scale access to dendritic polylysines with various potential applications in biology and in other domains.     

利用萤光光谱测定高分子端基叔胺值

<正> 近年来,利用萤光或磷光方法研究高分子的物理性质和化学性质,已愈益引起人们的兴趣,并取得了一定的结果。本工作利用了ππ跃迁克分子消光系数大(ε>10~4)的特性,用萤光光谱来测定PMMA的端基叔胺值,此法具有快速、简便、用量少、灵敏等优点。     

Synthesis of functionalized tetrahydroisoquinolines via palladium-catalyzed 6-exo-dig carbocyclization of 2-bromo-N-propargylbenzylamines

An efficient twostep synthetic strategy for tetrahydroisoquinolines has been described. The first step involves CuI catalyzed three-component coupling reaction of terminal alkyne, aldehyde and amine that provides the requisite propargyl amine. Regio- and stereoselective palladium-catalyzed 6-exo-dig carbocyclization of propargyl amine, which provides a concise access to functionalized tetrahydroisoquinolines in good yields has been developed.     

Synthesis of Aminooxy End-functionalized pNIPAAm by RAFT Polymerization for Protein and Polysaccharide Conjugation

A Boc-protected aminooxy end-functionalized poly(N-isopropylacrylamide) (pNIPAAm) was synthesized by reversible addition-fragmentation chain transfer (RAFT) polymerization. The monomer was polymerized in the presence of a Boc-protected aminooxy trithiocarbonate chain transfer agent (CTA) utilizing 2,2'-azobis(2-isobutyronitrile) (AIBN) as the initiator in DMF at 70 °C. The final polymer had a number-average molecular weight (M(n)) of 4,200 Da as determined by (1)H NMR spectroscopy and a narrow polydispersity index (1.14) by gel permeation chromatography (GPC). The Boc group was removed, and the polymer was then incubated with N(ε)-levulinyl lysine-modified bovine serum albumin (BSA). Gel electrophoresis confirmed that the conjugation was successful. The aminooxy end-functionalized pNIPAAm was also immobilized on a gold surface after reduction of the trithiocarbonate end-group. The pNIPAAm surface was then incubated with an aldehyde-modified heparin to yield the polysaccharide-functionalized surface. All surface modifications were monitored by FT-IR spectroscopy.     

Efficient tandem synthesis of 3-alkylaminoprop-2-enamides from 3-trimethylsilylprop-2-ynamides

A tandem synthetic approach to previously unknown 3-aminoprop-2-enamides has been developed. It is based on Si-C _sp desilylation of 3-trimethylsilylprop-2-ynamides and subsequent addition of an amine to the triple bond of intermediate terminal propynamides. The effects of the reaction conditions and amine nature on the efficiency of the process have been studied.     

N-triflyl-propiolamides: Preparation and transamidation reactions

N-Trifluoromethylsulfonyl-propiolamides have been prepared by two methods: a) N-triflation of secondary acetylenic carboxanilides, prepared in two steps from terminal alkynes, with triflic anhydride (Tf₂O) and b) from terminal alkynes and an aryl or alkyl isocyanate followed by Tf₂O in a consecutive one-pot reaction. The title compounds are bench-stable and insensitive to water and alcohols but amenable to transamidation reactions with a wide range of amine nucleophiles. Conversely, they are excellent reagents for the propynoylation of ammonia, primary and secondary amines, anilines, and hydrazines.     

Self-assembly via intermolecular hydrogen-bonding between o-/m-/p-NH2 and BF2 groups on dipyrromethenes

Boron difluoride dipyrromethenes bearing configurationally different amine groups on a meso-phenyl ring were prepared and crystallized. The ortho- and para-amino groups allow the phenyl group to inductively release greater electron density into the dipyrromethenes resulting in relatively strong intermolecular hydrogen-bonding with the terminal BF₂ groups, whereas the meta-analog formed weaker hydrogen-bonds. The intensities of the ¹H NMR peaks in concentrated solutions all increased with F-decoupling.     

Monitoring of the uptake and metabolism of aminooxy analogues of polyamines in cultured cells by high-performance liquid chromatography.

A high-performance liquid chromatographic method for the determination of polyamines and their aminooxy analogues is described. Oxime derivatization with a ketone is used to protect the aminooxy group during post-column reaction with o-phthalaldehyde. The amount of the polyamines and of the oximes of their aminooxy analogues can be determined simultaneously in cultured cells and cell culture media. The limit of detection is 20-30 pmol, and the response of the fluorescence detection is linear up to 4 nmol. The separation of the aminooxy analogues from the naturally occurring polyamines can be varied by using different ketones for oxime formation. The method was used to measure the stability of aminooxy analogues of putrescine (1-aminooxy-3-aminopropane) and spermidine [N-(2-aminooxyethyl)-1,4-diaminobutane and 1-aminooxy-3-N-(3-aminopropyl)aminopropane] in cell culture media and the uptake into cultured baby hamster kidney (BHK21/C13) cells.     

Chemoselective detection and discrimination of carbonyl‐containing compounds in metabolite mixtures by 1H‐detected 15N nuclear magnetic resonance

NMR spectra of mixtures of metabolites extracted from cells or tissues are extremely complex, reflecting the large number of compounds that are present over a wide range of concentrations. Although multidimensional NMR can greatly improve resolution as well as improve reliability of compound assignments, lower abundance metabolites often remain hidden. We have developed a carbonyl‐selective aminooxy probe that specifically reacts with free keto and aldehyde functions, but not carboxylates. By incorporating ¹⁵N in the aminooxy functional group, ¹⁵N‐edited NMR was used to select exclusively those metabolites that contain a free carbonyl function while all other metabolites are rejected. Here, we demonstrate that the chemical shifts of the aminooxy adducts of ketones and aldehydes are very different, which can be used to discriminate between aldoses and ketoses, for example. Utilizing the 2‐bond or 3‐bond ¹⁵N‐¹H couplings, the ¹⁵N‐edited NMR analysis was optimized first with authentic standards and then applied to an extract of the lung adenocarcinoma cell line A549. More than 30 carbonyl‐containing compounds at NMR‐detectable levels, six of which we have assigned by reference to our database. As the aminooxy probe contains a permanently charged quaternary ammonium group, the adducts are also optimized for detection by mass spectrometry. Thus, this sample preparation technique provides a better link between the two structural determination tools, thereby paving the way to faster and more reliable identification of both known and unknown metabolites directly in crude biological extracts. Copyright © 2015 John Wiley & Sons, Ltd.     

Identification of by-products from an orthogonal peptide ligation by oxime bonds using mass spectrometry and tandem mass spectrometry

Synthetic proteins with unusual architecture are obtained through chemoselective ligation, a method based on the condensation of unprotected peptides under mild aqueous conditions. The last step of a new procedure leading to a tri-branched conjugate consists of the chemoselective ligation reaction between an (aminooxy)acetyl peptide and a peptide aldehyde resulting from a first ligation via an oxime bond. In order to optimize the reaction conditions, electrospray ionization mass spectrometry combined with liquid chromatography and tandem mass spectrometry has been used. In addition to the target tri-branched conjugate, two other conjugates were characterized allowing documentation of transoximation reactions in peptide chemistry. A fourth conjugate was identified as a side product appearing after the first ligation. Data obtained by low-energy collision-induced dissociation led to a rapid and reliable identification of impurities observed in the (aminooxy)acetyl peptide despite a previous high performance liquid chromatography (HPLC) purification. This highlights the great reactivity of the aminooxy group towards carbonyl-containing compounds.     

End‐capped carbosilane dendrimers with benzoxazole,quinoline, and pyrone derivatives

Dendritic carbosilanes containing benzoxazole, quinoline, and pyrone derivatives on the periphery were prepared. The parent dendrimers in the inner shell were prepared by the use of iterative hydrosilation and alkenylation cycles. The end generations were obtained by the reaction of terminal Si? Cl groups on each periphery with HOR [HOR = 2‐(2‐hydroxyphenyl)‐benzoxazole, 8‐hydroxyquinoline, and 3‐hydroxy‐2‐methyl‐4‐pyrone] in the presence of amine. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 39: 2308–2314, 2001     

Bis­(dicyan­amido)(diethyl­enetri­amine‐κ3N)copper(II) and (dicyan­amido)(tri­ethyl­enetetr­amine‐κ4N)copper(II) dicyan­amide

Two new complexes, [Cu(C₂N₃)₂(dien)] (dien is diethyl­ene­tri­amine, C₄H₁₃N₃), (I), and [Cu(C₂N₃)(trien)](C₂N₃) (trien is triethyl­ene­tetr­amine, C₆H₁₈N₄), (II), have been characterized by single‐crystal X‐ray diffraction. Both complexes display a distorted tetragonal–pyramidal geometry. In (I), the Cu atom is coordinated in the basal plane by three diethyl­ene­tri­amine N atoms [Cu—N = 2.000 (2), 2.004 (2) and 2.025 (2) Å] and one terminal N atom [Cu—N = 1.974 (2) Å] from one monodentate dicyan­amide group, and in the apical position by one terminal N atom [Cu—N = 2.280 (2) Å] from the other monodentate dicyan­amide group. In (II), the Cu atom is surrounded by four triethyl­ene­tetr­amine N atoms [Cu—N = 2.012 (2), 2.014 (2), 2.019 (2) and 2.031 (2) Å in the basal plane] and a terminal N atom [Cu—N = 2.130 (2) Å in the apical site] from one monodentate dicyan­amide group. The other dicyan­amide anion is not directly coordinated to the metal atom. In both (I) and (II), hydro­gen‐bond interactions between the uncoordinated terminal N atoms of two dicyan­amide ions and the amine H atoms lead to the formation of three‐dimensional networks.     

π(Arene) versus donor ligand complexation in the formation of the heterobimetallic lithium-potassium dianion of (S)-N-(α-methylbenzyl)allylamine

Reaction of the chiral amine (S)-N-(α-methylbenzyl)allylamine with n-BuLi in hexane and the subsequent addition of the thus formed lithium amide to n-BuK followed by thf results in the formation and crystallisation of the cyclic heterobimetallic tetramer, {[(S)-α-(PhC(H)Me)(CH₂CHCHK)N]Li · (thf)}₄ (1), containing the C-metallated and N-metallated dianion of the chiral amine. The structure reveals a degree of asymmetry derived from competitive binding of K⁺ cations to available thf molecules, π(arene) electrons, and deprotonated allylamine moieties. Solution studies indicate very strong agostic interactions with C-H bonds in the allylamine group and retention of the terminal vinylic anion rather than delocalisation.     

Poly(propylene imine) dendrimers functionalized with stilbene or 1,4-distyrylbenzene chromophores

Two generations of dendritic nanoparticles were prepared, which contain (E)-stilbene or (E,E)-1,4-distyrylbenzene chromophores in the 4 or 8 terminal positions of the propylene imine dendrons. The compounds show a highly efficient photoreactivity. On prolonged irradiation all stilbenoid chromophores were destroyed by oligomerization (crosslinking) and the typical absorption and fluorescence of the chromophores disappeared completely.