Ab initio and semiempirical computational studies on 1‐{(2E)‐2‐[(aminocarbonothioyl)hydrazono]‐2‐(3‐mesityl‐3‐methylcyclobutyl)ethyl}‐pyrrolidine‐2,5‐dione

The molecular geometry, vibrational frequencies, and gauge including atomic orbital (GIAO) ¹H‐ and ¹³C NMR chemical shift values of the title compound in the ground state have been calculated using the Hartree‐Fock (HF) and density functional theory (DFT) methods with 6‐31G(d) basis sets, and compared with the experimental data. The calculated results show that the optimized geometries can well reproduce the crystal structural parameters and the theoretical vibrational frequencies, and ¹H‐ and ¹³C NMR chemical shift values show good agreement with experimental data. To determine conformational flexibility, the molecular energy profile of the title compound was obtained by semiempirical (AM1) calculations with respect to the selected torsion angle, which was varied from ?180° to +180° in steps of 10°. The energetic behavior of the title compound in solvent media was examined using the B3LYP method with the 6‐31G(d) basis set by applying the Onsager and the polarizable continuum model (PCM). The results obtained with these methods reveal that the PCM method provided more stable structure than Qnsager's method. By using TD‐DFT method, electronic absorption spectra of the title compound have been predicted and a good agreement with the TD‐DFT method and the experimental one is determined. The predicted nonlinear optical properties of the title compound are much greater than ones of urea. In addition, the molecular electrostatic potential (MEP), frontier molecular orbitals (FMO) analysis, NBO analysis and thermodynamic properties of the title compound were investigated using theoretical calculations. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Aluminium Speciation in 1‐Butyl‐1‐Methylpyrrolidinium Bis(trifluoromethylsulfonyl)amide/AlCl3 Mixtures

Aluminium speciation : Aluminium speciation in NTf₂ ionic liquids has a strong influence on its electrodeposition from the liquid mixture. This work probed the nature of these species and proposes that the electroactive species involved are either [AlCl₃(NTf₂)]^? or [AlCl₂(NTf₂)₂]^? (e.g., see figure).

     

A C‐linked Glycomimetic in the Gas Phase and in Solution: Synthesis and Conformation of the Disaccharide Manα(1,6)‐C‐ManαOPh

The effect of carbon is subtle but sweet : The flexible C‐linkage in the newly synthesised C‐glycosyl mimetic, Manα(1,6)‐C‐ManαOPh allows OH? π bonding, both in the gas phase and in aqueous solution. This interaction is absent in the O‐linked disaccharide (see figure).

     

B3N3 Borazine Substitution in Hexa‐peri‐Hexabenzocoronene: Computational Analysis and Scholl Reaction of Hexaphenylborazine

The doping of graphene molecules by borazine (B₃N₃) units may modify the electronic properties favorably. Therefore, the influence of the substitution of the central benzene ring of hexa‐peri‐hexabenzocoronene (HBC, C₄₂H₁₈) by an isoelectronic B₃N₃ ring resulting in C₃₆B₃N₃H₁₈ (B3N3HBC) is investigated by computational methods. For comparison, the isoelectronic and isosteric all‐B/N molecule B₂₁N₂₁H₁₈ (termed BN) and its carbon derivative C₆B₁₈N₁₈H₁₈ (C6BN), obtained by substitution of a central B₃N₃ by a C₆ ring, are also studied. The substitution of C₆ in the HBC molecule by a B₃N₃ unit results in a significant change of the computed IR vibrational spectrum between 1400 and 1600 cm^?1 due to the polarity of the borazine core. The properties of the BN molecule resemble those of hexagonal boron nitride, and substitution of the central B₃N₃ ring by C₆ changes the computed IR vibrational spectrum only slightly. The allowed transitions to excited states associated with large oscillator strengths shift to higher energy upon going from HBC to B3N3HBC, but to lower energy upon going from BN to C6BN. The possibility of synthesis of B3N3HBC from hexaphenylborazine (HPB) using the Scholl reaction (CuCl₂/AlCl₃ in CS₂) is investigated. Rather than the desired B3N3HBC an insoluble and X‐ray amorphous polymer P is obtained. Its analysis by IR and ¹¹B magic angle spinning NMR spectroscopy reveals the presence of borazine units. The changes in the ¹¹B quadrupolar coupling constant C_Q, asymmetry parameter η, and isotropic chemical shift δ_iso(¹¹B) with respect to HPB are in agreement with a structural model that includes B3N3HBC‐derived monomeric units in polymer P. This indicates that both intra‐ and intermolecular cyclodehydrogenation reactions take place during the Scholl reaction of HPB.     

The Structure and Torsional Dynamics of Two Methyl Groups in 2‐Acetyl‐5‐methylfuran as Observed by Microwave Spectroscopy

The molecular‐beam Fourier transform microwave spectrum of 2‐acetyl‐5‐methylfuran is recorded in the frequency range 2–26.5 GHz. Quantum chemical calculations calculate two conformers with trans or cis configuration of the acetyl group, both of which are assigned in the experimental spectrum. All rotational transitions split into quintets due to the internal rotations of two nonequivalent methyl groups. By using the program XIAM, the experimental spectra can be simulated with standard deviations within the measurement accuracy, and yield well‐determined rotational and internal rotation parameters, inter alia the V₃ potentials. Whereas the V₃ barrier height of the ring‐methyl rotor does not change for the two conformers, that of the acetyl‐methyl rotor differs by about 100 cm^?1. The predicted values from quantum chemistry are only on the correct order of magnitude.     

The Molecular Structure of gauche‐1,3‐Butadiene: Experimental Establishment of Non‐planarity

The planarity of the second stable conformer of 1,3‐butadiene, the archetypal diene for the Diels–Alder reaction in which a planar conjugated diene and a dienophile combine to form a ring, is not established. The most recent high level calculations predicted the species to adopt a twisted, gauche structure owing to steric interactions between the inner terminal hydrogens rather than a planar, cis structure favored by the conjugation of the double bonds. The structure cis‐1,3‐butadiene is unambiguously confirmed experimentally to indeed be gauche with a substantial dihedral angle of 34°, in excellent agreement with theory. Observation of two tunneling components indicates that the molecule undergoes facile interconversion between two equivalent enantiomeric forms. Comparison of experimentally determined structures for gauche‐ and trans‐butadiene provides an opportunity to examine the effects of conjugation and steric interactions.     

Reaction of Paramagnetic Synthon,Lithiated 4,4,5,5‐Tetramethyl‐4,5‐dihydro‐1H‐imidazol‐1‐oxyl 3‐oxide,with Cyclic Aldonitrones of the Imidazole Series

It was shown that dipole‐stabilized paramagnetic carbanion lithiated 4,4,5,5‐tetramethyl‐4,5‐dihydro‐1H‐imidazol‐1‐oxyl 3‐oxide can be attached in a nucleophilic manner to either isolated or conjugated aldonitrones of the 2,5‐dihydroimidazole 3‐oxide and 2H‐imidazole 1‐oxide series to afford adducts the subsequent oxidation of which leads to polyfunctional mono‐ and diradicals. According to XRD, at least two polymorphic modifications can be formed during crystallization of the resulting paramagnetic compounds, and for each of them, geometric parameters of the molecules are similar. An EPR spectrum of the diradical in frozen toluene has a complicated lineshape, which can be fairly well reproduced by using X‐ray diffraction structural analysis and the following set of parameters: D=14.9 mT, E=1.7 mT; tensor a(¹⁴N)=[0.260 0.260 1.625] mT, two equivalent tensors for the nitronyl nitroxide moiety a(¹⁴N)=[0.198 0.198 0.700] mT, and g≈2.007. According to our DFT and ab initio calculations, the intramolecular exchange in the diradical is very weak and most likely ferromagnetic.     

Fluorine Substitution Effects on Flexibility and Tunneling Pathways: The Rotational Spectrum of 2‐Fluorobenzylamine

The effect of ring fluorination on the structural and dynamical properties of the flexible model molecule 2‐fluorobenzylamine has been studied by rotational spectroscopy in free‐jet expansion and quantum chemical methods. The complete potential energy surface originating from the flexibility of the aminic side chain has been calculated at the B3LYP/6‐311++G** level of theory and the stable geometries were also characterized with MP2/6‐311++G**. The rotational spectra show the presence of two of the predicted four stable conformers: the global minimum (I), in which the side chain’s dihedral angle with the phenyl plane is almost perpendicular, is stabilized by an intramolecular hydrogen bond between the fluorine atom and one hydrogen of the aminic group; and a second conformer II (E_II?E_I≈5 kJ mol^?1) in which the dihedral angle is smaller and the amino group points towards the aromatic ortho hydrogen atom. This conformation is characterized by a tunneling motion between two equivalent positions of the amino group with respect to the phenyl plane, which splits the rotational transition. The ortho fluorination increases, with respect to benzylamine, the tunneling splitting of this motion by four orders of magnitude. The motion is analyzed with a one‐dimensional flexible model, which allows estimation of the energy barrier for the transition state as approximately 8.0 kJ mol^?1.     

A 93Nb Solid‐State NMR and Density Functional Theory Study of Four‐ and Six‐Coordinate Niobate Systems

A variable B₀ field static (broadline) NMR study of a large suite of niobate materials has enabled the elucidation of high‐precision measurement of ⁹³Nb NMR interaction parameters such as the isotropic chemical shift (δ_iso), quadrupole coupling constant and asymmetry parameter (C_Q and η_Q), chemical shift span/anisotropy and skew/asymmetry (Ω/Δδ and κ/η_δ) and Euler angles (α, β, γ) describing the relative orientation of the quadrupolar and chemical shift tensorial frames. These measurements have been augmented with ab initio DFT calculations by using WIEN2k and NMR‐CASTEP codes, which corroborate these reported values. Unlike previous assertions made about the inability to detect CSA (chemical shift anisotropy) contributions from Nb^V in most oxo environments, this study emphasises that a thorough variable B₀ approach coupled with the VOCS (variable offset cumulative spectroscopy) technique for the acquisition of undistorted broad (?1/2?+1/2) central transition resonances facilitates the unambiguous observation of both quadrupolar and CSA contributions within these ⁹³Nb broadline data. These measurements reveal that the ⁹³Nb electric field gradient tensor is a particularly sensitive measure of the immediate and extended environments of the Nb^V positions, with C_Q values in the 0 to >80 MHz range being measured; similarly, the δ_iso (covering an approximately 250 ppm range) and Ω values (covering a 0 to approximately 800 ppm range) characteristic of these niobate systems are also sensitive to structural disposition. However, their systematic rationalisation in terms of the Nb? O bond angles and distances defining the immediate Nb^V oxo environment is complicated by longer‐range influences that usually involve other heavy elements comprising the structure. It has also been established in this study that the best computational method(s) of analysis for the ⁹³Nb NMR interaction parameters generated here are the all‐electron WIEN2k and the gauge included projector augmented wave (GIPAW) NMR‐CASTEP DFT approaches, which account for the short‐ and long‐range symmetries, periodicities and interaction‐potential characteristics for all elements (and particularly the heavy elements) in comparison with Gaussian 03 methods, which focus on terminated portions of the total structure.     

Nuclear‐Spin‐Induced Cotton–Mouton Effect in a Strong External Magnetic Field

Novel, high‐sensitivity and high‐resolution spectroscopic methods can provide site‐specific nuclear information by exploiting nuclear magneto‐optic properties. We present a first‐principles electronic structure formulation of the recently proposed nuclear‐spin‐induced Cotton–Mouton effect in a strong external magnetic field (NSCM‐B). In NSCM‐B, ellipticity is induced in a linearly polarized light beam, which can be attributed to both the dependence of the symmetric dynamic polarizability on the external magnetic field and the nuclear magnetic moment, as well as the temperature‐dependent partial alignment of the molecules due to the magnetic fields. Quantum‐chemical calculations of NSCM‐B were conducted for a series of molecular liquids. The overall order of magnitude of the induced ellipticities is predicted to be 10^?11–10^?6 rad T^?1 M ^?1 cm^?1 for fully spin‐polarized nuclei. In particular, liquid‐state heavy‐atom systems should be promising for experiments in the Voigt setup.     

Probing the Methyl Torsional Barriers of the E and Z Isomers of Butadienyl Acetate by Microwave Spectroscopy

The Fourier transform microwave spectra of the E and Z isomers of butadienyl acetate were measured in the frequency range from 2 to 26.5 GHz under molecular‐jet conditions. The most stable conformer of each isomer, in which all heavy atoms are located in a symmetry plane, was identified after analyzing the spectrum by comparison with the results from quantum‐chemical calculations. The barriers to internal rotation of the acetyl methyl group were found to be 149.1822(20) and 150.2128(48) cm^?1 for the E and Z isomers, respectively, which are similar to that of vinyl acetate. A comparison between two theoretical approaches treating internal rotation, the rho axis method and combined axis method, was also performed. The influence of the alkyl R chain on the methyl torsional barriers in CH₃ ‐COOR acetates was explored.     

12‐ to 22‐Membered Bridged β‐Lactams as Potential Penicillin‐Binding Protein Inhibitors

As potential inhibitors of penicillin‐binding proteins (PBPs), we focused our research on the synthesis of non‐traditional 1,3‐bridged β‐lactams embedded into macrocycles. We synthesized 12‐ to 22‐membered bicyclic β‐lactams by the ring‐closing metathesis (RCM) of bis‐ω‐alkenyl‐3(S)‐aminoazetidinone precursors. The reactivity of 1,3‐bridged β‐lactams was estimated by the determination of the energy barrier of a concerted nucleophilic attack and lactam ring‐opening process by using ab initio calculations. The results predicted that 16‐membered cycles should be more reactive. Biochemical evaluations against R39 DD‐peptidase and two resistant PBPs, namely, PBP2a and PBP5, revealed the inhibition effect of compound 4d , which featured a 16‐membered bridge and the N‐tert‐butyloxycarbonyl chain at the C3 position of the β‐lactam ring. Surprisingly, the corresponding bicycle, 12d , with the PhOCH₂CO side chain at C3 was inactive. Reaction models of the R39 active site gave a new insight into the geometric requirements of the conformation of potential ligands and their steric hindrance; this could help in the design of new compounds.     

A “Distorted‐BODIPY”‐Based Fluorescent Probe for Imaging of Cellular Viscosity in Live Cells

Cellular viscosity is a critical factor in governing diffusion‐mediated cellular processes and is linked to a number of diseases and pathologies. Fluorescent molecular rotors (FMRs) have recently been developed to determine viscosity in solutions or biological fluid. Herein, we report a “distorted‐BODIPY”‐based probe BV‐1 for cellular viscosity, which is different from the conventional “pure rotors”. In BV‐1 , the internal steric hindrance between the meso‐CHO group and the 1,7‐dimethyl group forced the boron–dipyrrin framework to be distorted, which mainly caused nonradiative deactivation in low‐viscosity environment. BV‐1 gave high sensitivity (x=0.62) together with stringent selectivity to viscosity, thus enabling viscosity mapping in live cells. Significantly, the increase of cytoplasmic viscosity during apoptosis was observed by BV‐1 in real time.     

Unraveling σ and π Effects on Magnetic Anisotropy in cis‐NiA4B2 Complexes: Magnetization,HF‐HFEPR Studies,First‐Principles Calculations,and Orbital Modeling

By using complementary experimental techniques and first‐principles theoretical calculations, magnetic anisotropy in a series of five hexacoordinated nickel(II) complexes possessing a symmetry close to C_2v, has been investigated. Four complexes have the general formula [Ni(bpy)X₂]ⁿ⁺ (bpy=2,2′‐bipyridine; X₂=bpy ( 1 ), (NCS^?)₂ ( 2 ), C₂O₄^2? ( 3 ), NO₃^? ( 4 )). In the fifth complex, [Ni(HIM₂‐py)₂(NO₃)]⁺ ( 5 ; HIM₂‐py=2‐(2‐pyridyl)‐4,4,5,5‐tetramethyl‐4,5‐dihydro‐1H‐imidazolyl‐1‐hydroxy), which was reported previously, the two bpy bidentate ligands were replaced by HIM₂‐py. Analysis of the high‐field, high‐frequency electronic paramagnetic resonance (HF‐HFEPR) spectra and magnetization data leads to the determination of the spin Hamiltonian parameters. The D parameter, corresponding to the axial magnetic anisotropy, was negative (Ising type) for the five compounds and ranged from ?1 to ?10 cm^?1. First‐principles SO‐CASPT2 calculations have been performed to estimate these parameters and rationalize the experimental values. From calculations, the easy axis of magnetization is in two different directions for complexes 2 and 3 , on one hand, and 4 and 5 , on the other hand. A new method is proposed to calculate the g tensor for systems with S=1. The spin Hamiltonian parameters (D (axial), E (rhombic), and g_i) are rationalized in terms of ordering of the 3 d orbitals. According to this orbital model, it can be shown that 1) the large magnetic anisotropy of 4 and 5 arises from splitting of the e_g‐like orbitals and is due to the difference in the σ‐donor strength of NO₃^? and bpy or HIM₂‐py, whereas the difference in anisotropy between the two compounds is due to splitting of the t_2g‐like orbitals; and 2) the anisotropy of complexes 1 – 3 arises from the small splitting of the t_2g‐like orbitals. The direction of the anisotropy axis can be rationalized by the proposed orbital model.     

Torsional angular dependence of 1J(Se,Se) and Fermi contact control of 4J(Se,Se): analysis of nJ(Se,Se) (n=1-4) based on molecular orbital theory

(n)J(Se,Se) (n=1-4) nuclear couplings between Se atoms were analyzed by using molecular orbital (MO) theory as the first step to investigating the nature of bonded and nonbonded (n)J(Se,Se) interactions between Se atoms. The values were calculated by employing Slater-type triple xi basis sets at the DFT level, which were applied to structures optimized with the Gaussian 03 program. The contribution from each occupied MO (psi(i)) and psi(i)-->psi(a) (psi(a)=unoccupied MO) transition was evaluated separately. 1J(Se,Se) was calculated for the MeSeSeMe model compound, which showed a typical dependence on the torsion angle (phi(C(Me)SeSeC(Me))). This dependence explains the small values (< or =64 Hz) of 1Jobsd(Se,Se) observed for RSeSeR' and large values (330-380 Hz) of 1Jobsd(Se,Se) observed for 4-substituted naphtho[1,8-c,d]-1,2-diselenoles, which correspond to synperiplanar diselenides. The HOMO-->LUMO and HOMO-1-->LUMO transitions contribute the most to 1J(Se,Se) at phi=0 and 180 degrees to give large values of 1J(Se,Se), whereas various transitions contribute and cancel each other out at phi=90 degrees to give small values of 1J(Se,Se). Large 4Jobsd(Se,Se) values were also observed in the nonbonded Se...Se, Se...Se=O, and O=Se...Se=O interactions at naphthalene 1,8-positions. The Fermi contact (FC) term contributes significantly to 4J(Se,Se), whereas the paramagnetic spin-orbit (PSO) term contributes significantly to 1J(Se,Se). 2J(Se,Se) and 3J(Se,Se) were analyzed in a similar manner and a torsional angular dependence was confirmed for 3J(Se,Se). Depending on the structure, the main contribution to (n)J(Se,Se) (n=2, 3) is from the FC term, with a lesser contribution from the PSO term. Analysis of each transition enabled us to identify and clearly visualize the origin and mechanism of the couplings.     

Ultra‐wideline 27Al NMR Investigation of Three‐ and Five‐Coordinate Aluminum Environments

Ultra‐wideline ²⁷Al NMR experiments are conducted on coordination compounds with ²⁷Al nuclei possessing immense quadrupolar interactions that result from exceptionally nonspherical coordination environments. NMR spectra are acquired using a methodology involving frequency‐stepped, piecewise acquisition of NMR spectra with Hahn‐echo or quadrupolar Carr–Purcell Meiboom–Gill (QCPMG) pulse sequences, which is applicable to any half‐integer quadrupolar nucleus with extremely broad NMR powder patterns. Despite the large breadth of these central transition powder patterns, ranging from 250 to 700 kHz, the total experimental times are an order of magnitude less than previously reported experiments on analogous complexes with smaller quadrupolar interactions. The complexes examined feature three‐ or five‐coordinate aluminum sites: trismesitylaluminum (AlMes₃), tris(bis(trimethylsilyl)amino)aluminum (Al(NTMS₂)₃), bis[dimethyl tetrahydrofurfuryloxide aluminum] ([Me₂‐Al(μ‐OTHF)]₂), and bis[diethyl tetrahydrofurfuryloxide aluminum] ([Et₂‐Al(μ‐OTHF)]₂). We report some of the largest ²⁷Al quadrupolar coupling constants measured to date, with values of C_Q(²⁷Al) of 48.2(1), 36.3(1), 19.9(1), and 19.6(2) MHz for AlMes₃ , Al(NTMS₂)₃ , [Me₂‐Al(μ‐OTHF)]₂ , and [Et₂‐Al(μ‐OTHF)]₂ , respectively. X‐ray crystallographic data and theoretical (Hartree–Fock and DFT) calculations of ²⁷Al electric field gradient (EFG) tensors are utilized to examine the relationships between the quadrupolar interactions and molecular structure; in particular, the origin of the immense quadrupolar interaction in the three‐coordinate species is studied via analyses of molecular orbitals.     

Electronic and Vibrational Spectroscopy of 1‐Methylthymine and its Water Clusters: The Dark State Survives Hydration

Electronic and vibrational gas phase spectra of 1‐methylthymine (1MT) and 1‐methyluracil (1MU) and their clusters with water are presented. Mass selective IR/UV double resonance spectra confirm the formation of pyrimidine‐water clusters and are compared to calculated vibrational spectra obtained from ab initio calculations. In contrast to Y. He, C. Wu, W. Kong; J. Phys. Chem. A, 2004 , 108, 94 we are able to detect 1MT/1MU and their water clusters via resonant two‐photon delayed ionization under careful control of the applied water‐vapor pressure. The long‐living dark electronic state of 1MT and 1MU detected by delayed ionization, survives hydration and the photostability of 1MT/1MU cannot be attributed solely to hydration. Oxygen coexpansions and crossed‐beam experiments indicate that the triplet state population is probably small compared to the ¹nπ* and/or hot electronic ground state population. Ab initio theory shows that solvation of 1MT by water does not lead to a substantial modification of the electronic relaxation and quenching of the ¹nπ* state. Relaxation pathways via ¹ππ*¹–nπ*¹ and ¹ππ *–S₀ conical intersections and barriers have been identified, but are not significantly altered by hydration.