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1.
First Principles (DFT) Characterization of RhI/dppp‐Catalyzed CH Activation by Tandem 1,2‐Addition/1,4‐Rh Shift Reactions of Norbornene to Phenylboronic Acid
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Prof. Dr. Eric Assen B. Kantchev Surya R. Pangestu Dr. Feng Zhou Dr. Michael B. Sullivan Prof. Hai‐Bin Su 《Chemistry (Weinheim an der Bergstrasse, Germany)》2014,20(47):15625-15634
The C?H activation in the tandem, “merry‐go‐round”, [(dppp)Rh]‐catalyzed (dppp=1,3‐bis(diphenylphosphino)propane), four‐fold addition of norborene to PhB(OH)2 has been postulated to occur by a C(alkyl)?H oxidative addition to square‐pyramidal RhIII?H species, which in turn undergoes a C(aryl)?H reductive elimination. Our DFT calculations confirm the RhI/RhIII mechanism. At the IEFPCM(toluene, 373.15 K)/PBE0/DGDZVP level of theory, the oxidative addition barrier was calculated to be 12.9 kcal mol?1, and that of reductive elimination was 5.0 kcal mol?1. The observed selectivity of the reaction correlates well with the relative energy barriers of the cycle steps. The higher barrier (20.9 kcal mol?1) for norbornyl–Rh protonation ensures that the reaction is steered towards the 1,4‐shift (total barrier of 16.3 kcal mol?1), acting as an equilibration shuttle. The carborhodation (13.2 kcal mol?1) proceeds through a lower barrier than the protonation (16.7 kcal mol?1) of the rearranged aryl–Rh species in the absence of o‐ or m‐substituents, ensuring multiple carborhodations take place. However, for 2,5‐dimethylphenyl, which was used as a model substrate, the barrier for carborhodation is increased to 19.4 kcal mol?1, explaining the observed termination of the reaction at 1,2,3,4‐tetra(exo‐norborn‐2‐yl)benzene. Finally, calculations with (Z)‐2‐butene gave a carborhodation barrier of 20.2 kcal mol?1, suggesting that carborhodation of non‐strained, open‐chain substrates would be disfavored relative to protonation. 相似文献
2.
Dr. Laura Rubio‐Pérez Dipl.‐Chem. Ramón Azpíroz Dr. Andrea Di Giuseppe Dr. Victor Polo Dr. Ricardo Castarlenas Prof. Jesús J. Pérez‐Torrente Prof. Luis A. Oro 《Chemistry (Weinheim an der Bergstrasse, Germany)》2013,19(45):15304-15314
A general regioselective rhodium‐catalyzed head‐to‐tail dimerization of terminal alkynes is presented. The presence of a pyridine ligand (py) in a Rh–N‐heterocyclic‐carbene (NHC) catalytic system not only dramatically switches the chemoselectivity from alkyne cyclotrimerization to dimerization but also enhances the catalytic activity. Several intermediates have been detected in the catalytic process, including the π‐alkyne‐coordinated RhI species [RhCl(NHC)(η2‐HC?CCH2Ph)(py)] ( 3 ) and [RhCl(NHC){η2‐C(tBu)?C(E)CH?CHtBu}(py)] ( 4 ) and the RhIII–hydride–alkynyl species [RhClH{? C?CSi(Me)3}(IPr)(py)2] ( 5 ). Computational DFT studies reveal an operational mechanism consisting of sequential alkyne C? H oxidative addition, alkyne insertion, and reductive elimination. A 2,1‐hydrometalation of the alkyne is the more favorable pathway in accordance with a head‐to‐tail selectivity. 相似文献
3.
The Unexpected Mechanism Underlying the High‐Valent Mono‐Oxo‐Rhenium(V) Hydride Catalyzed Hydrosilylation of CN Functionalities: Insights from a DFT Study
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In this study, we theoretically investigated the mechanism underlying the high‐valent mono‐oxo‐rhenium(V) hydride Re(O)HCl2(PPh3)2 ( 1 ) catalyzed hydrosilylation of C?N functionalities. Our results suggest that an ionic SN2‐Si outer‐sphere pathway involving the heterolytic cleavage of the Si?H bond competes with the hydride pathway involving the C?N bond inserted into the Re?H bond for the rhenium hydride ( 1 ) catalyzed hydrosilylation of the less steric C?N functionalities (phenylmethanimine, PhCH=NH, and N‐phenylbenzylideneimine, PhCH=NPh). The rate‐determining free‐energy barriers for the ionic outer‐sphere pathway are calculated to be ~28.1 and 27.6 kcal mol?1, respectively. These values are slightly more favorable than those obtained for the hydride pathway (by ~1–3 kcal mol?1), whereas for the large steric C?N functionality of N,1,1‐tri(phenyl)methanimine (PhCPh=NPh), the ionic outer‐sphere pathway (33.1 kcal mol?1) is more favorable than the hydride pathway by as much as 11.5 kcal mol?1. Along the ionic outer‐sphere pathway, neither the multiply bonded oxo ligand nor the inherent hydride moiety participate in the activation of the Si?H bond. 相似文献
4.
Dr. Yuxia Liu Prof. Dongju Zhang Dr. Jun Gao Prof. Chengbu Liu 《Chemistry (Weinheim an der Bergstrasse, Germany)》2012,18(48):15537-15545
The aromatic C? C bond cleavage by a tungsten complex reported recently by Sattler and Parkin 15 offers fresh opportunities for the functionalization of organic molecules. The mechanism of such a process has not yet been determined, which appeals to computational assistance to understand how the unstrained C? C bond is activated at the molecular level. 16 , 17 In this work, by performing density functional theory calculations, we studied various possible mechanisms of cleavage of the aromatic C? C bond in quinoxaline (QoxH) by the W‐based complex [W(PMe3)4(η2‐CH2PMe2)H]. The calculated results show that the mechanism proposed by Sattler and Parkin involves an overall barrier of as high as 42.0 kcal mol?1 and thus does not seem to be consistent with the experimental observation. Alternatively, an improved mechanism has been presented in detail, which involves the removal and recoordination of a second PMe3 ligand on the tungsten center. In our new mechanism, it is proposed that the C? C cleavage occurs prior to the second C? H bond addition, in contrast to Sattler and Parkin’s mechanism in which the C? C bond is broken after the second C? H bond addition. We find that the rate‐determining step of the reaction is the ring‐opening process of the tungsten complex with an activation barrier of 28.5 kcal mol?1 after the first PMe3 ligand dissociation from the metal center. The mono‐hydrido species is located as the global minimum on the potential‐energy surface, which is in agreement with the experimental observation for this species. The present theoretical results provide new insight into the mechanism of the remarkable C? C bond cleavage. 相似文献
5.
Exploring the Oxidative‐Addition Pathways of Phenyl Chloride in the Presence of PdII Abnormal N‐Heterocyclic Carbene Complexes: A DFT Study
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Totan Mondal Sriman De Bholanath Maity Dr. Debasis Koley 《Chemistry (Weinheim an der Bergstrasse, Germany)》2016,22(44):15778-15790
DFT calculations were performed to elucidate the oxidative addition mechanism of the dimeric palladium(II) abnormal N‐heterocyclic carbene complex 2 in the presence of phenyl chloride and NaOMe base under the framework of a Suzuki–Miyaura cross‐coupling reaction. Pre‐catalyst 2 undergoes facile, NaOMe‐assisted dissociation, which led to monomeric palladium(II) species 5 , 6 , and 7 , each of them independently capable of initiating oxidative addition reactions with PhCl. Thereafter, three different mechanistic routes, path a, path b, and path c, which originate from the catalytic species 5 , 7 , and 6 , were calculated at M06‐L ‐D3(SMD)/LANL2TZ(f)(Pd)/6–311++G**//M06‐L/LANL2DZ(Pd)/6–31+G* level of theory. All studied routes suggested the rather uncommon PdII/PdIV oxidative addition mechanism to be favourable under the ambient reaction conditions. Although the Pd0/PdII routes are generally facile, the final reductive elimination step from the catalytic complexes were energetically formidable. The PdII/PdIV activation barriers were calculated to be 11.3, 9.0, 26.7 kcal mol?1 (ΔΔ≠GLS‐D3) more favourable than the PdII/Pd0 reductive elimination routes for path a, path b, and path c, respectively. Out of all the studied pathways, path a was the most feasible as it comprised of a PdII/PdIV activation barrier of 24.5 kcal mol?1 (ΔGLS‐D3). To further elucidate the origin of transition‐state barriers, EDA calculations were performed for some key saddle points populating the energy profiles. 相似文献
6.
Zhishan Su Dr. Song Qin Dr. Changwei Hu Prof. Dr. Xiaoming Feng Prof. Dr. 《Chemistry (Weinheim an der Bergstrasse, Germany)》2010,16(14):4359-4367
The mechanism of the hetero‐Diels–Alder reactions of Brassard’s diene and 1,3‐butadiene catalyzed by a titanium(IV) complex of a tridentate Schiff base was investigated by DFT and ONIOM methods. The calculations indicate that the mechanism of the reaction is closely related to the nucleophilicity–electrophilicity between diene and carbonyl substrates. A stepwise pathway is adopted for Brassard’s diene, and the step corresponding to the formation of the C? C bond is predicted to be the rate‐determining step with a free‐energy barrier of 8.4 kcal mol?1. For 1,3‐butadiene, the reaction takes place along a one‐step, two‐stage pathway with a free‐energy barrier of 14.9 kcal mol?1. For Brassard’s diene as substrate, the OCH3 and OSi(CH3)3 substituents may play a key role in the formation of the transition state and zwitterionic intermediate by participating in charge transfer from Brassard’s diene to formaldehyde. The combination of the phenyl groups at the amino alcohol moiety and the ortho‐tert‐butyl group of the salicylaldehyde moiety in the chiral tridentate Schiff base ligand plays an important role in the control of the stereoselectivity, which is in agreement with experimental observations. 相似文献
7.
《Mendeleev Communications》2023,33(2):153-156
Exploring the free energy surface of the R–NHC coupling reaction in the key intermediates of the Mizoroki–Heck and cross-coupling catalytic cycles has been conducted by the methods of biased and unbiased molecular dynamics. Molecular dynamics simulations were carried out both in vacuum and in a polar solvent, with the following main observations on the influence of the media: (1) the solvent prevents the dissociation of the solvate ligand, so the R–NHC coupling proceeds in a four-coordination complex (rather than in a three-coordination one, as in the case of a gas-phase reaction); (2) in the condensed phase, the potential barrier of the reaction is significantly higher compared to the same process in vacuum (17.7 vs. 21.8 kcal mol-1); (3) polar solvent stabilizes the R–NHC coupling product. The reaction in a polar medium is exergonic (ΔG = −3.9 kcal mol-1), in contrast to the in vacuum modeling, where the process is endergonic (ΔG = 0.4 kcal mol-1). 相似文献
8.
Timothy J. Brown Dr. Atsushi Sugie Dr. Marina G. D. Leed Prof. Ross A. Widenhoefer 《Chemistry (Weinheim an der Bergstrasse, Germany)》2012,18(22):6959-6971
A family of seven cationic gold complexes that contain both an alkyl substituted π‐allene ligand and an electron‐rich, sterically hindered supporting ligand was isolated in >90 % yield and characterized by spectroscopy and, in three cases, by X‐ray crystallography. Solution‐phase and solid‐state analysis of these complexes established preferential binding of gold to the less substituted C?C bond of the allene and to the allene π face trans to the substituent on the uncomplexed allenyl C?C bond. Kinetic analysis of intermolecular allene exchange established two‐term rate laws of the form rate=k1[complex]+k2[complex][allene] consistent with allene‐independent and allene‐dependent exchange pathways with energy barriers of ΔG≠1=17.4–18.8 and ΔG≠2=15.2–17.6 kcal mol?1, respectively. Variable temperature (VT) NMR analysis revealed fluxional behavior consistent with facile (ΔG≠=8.9–11.4 kcal mol?1) intramolecular exchange of the allene π faces through η1‐allene transition states and/or intermediates that retain a staggered arrangement of the allene substituents. VT NMR/spin saturation transfer analysis of [{P(tBu)2o‐binaphthyl}Au(η2‐4,5‐nonadiene) ]+SbF6? ( 5 ), which contains elements of chirality in both the phosphine and allene ligands, revealed no epimerization of the allene ligand below the threshold for intermolecular allene exchange (ΔG≠298K=17.4 kcal mol?1), which ruled out the participation of a η1‐allylic cation species in the low‐energy π‐face exchange process for this complex. 相似文献
9.
Computational Insight into Nickel‐Catalyzed Carbon–Carbon versus Carbon–Boron Coupling Reactions of Primary,Secondary, and Tertiary Alkyl Bromides
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Dr. Man Sing Cheung Fu Kit Sheong Prof. Dr. Todd B. Marder Prof. Dr. Zhenyang Lin 《Chemistry (Weinheim an der Bergstrasse, Germany)》2015,21(20):7480-7488
The nickel‐catalyzed alkyl–alkyl cross‐coupling (C?C bond formation) and borylation (C?B bond formation) of unactivated alkyl halides reported in the literature show completely opposite reactivity orders in the reactions of primary, secondary, and tertiary alkyl bromides. The proposed NiI/NiIII catalytic cycles for these two types of bond‐formation reactions were studied computationally by means of DFT calculations at the B3LYP level. These calculations indicate that the rate‐determining step for alkyl–alkyl cross‐coupling is the reductive elimination step, whereas for borylation the rate is determined mainly by the atom‐transfer step. In borylation reactions, the boryl ligand involved has an empty p orbital, which strongly facilitates the reductive elimination step. The inability of unactivated tertiary alkyl halides to undergo alkyl–alkyl cross‐coupling is mainly due to the moderately high reductive elimination barrier. 相似文献
10.
Sippakorn Wannakao Dr. Bundet Boekfa Dr. Pipat Khongpracha Prof. Dr. Michael Probst Prof. Dr. Jumras Limtrakul 《Chemphyschem》2010,11(16):3432-3438
The adsorption and the mechanism of the oxidative dehydrogenation (ODH) of propane over VO2‐exchanged MCM‐22 are investigated by DFT calculations using the M06‐L functional, which takes into account dispersion contributions to the energy. The adsorption energies of propane are in good agreement with those from computationally much more demanding MP2 calculations and with experimental results. In contrast, B3LYP binding energies are too small. The reaction begins with the movement of a methylene hydrogen atom to the oxygen atom of the VO2 group, which leads to an isopropyl radical bound to a HO? V? O intermediate. This step is rate determining with the apparent activation energy of 30.9 kcal mol?1, a value within the range of experimental results for ODH over other silica supports. In the propene formation step, the hydroxyl group is the more reactive group requiring an apparent activation energy of 27.7 kcal mol?1 compared to that of the oxy group of 40.8 kcal mol?1. To take the effect of the extended framework into account, single‐point calculations on 120T structures at the same level of theory are performed. The apparent activation energy is reduced to 28.5 kcal mol?1 by a stabilizing effect caused by the framework. Reoxidation of the catalyst is found to be important for the product release at the end of the reaction. 相似文献
11.
Dr. Zhe Li Yuan‐Ye Jiang Prof. Dr. Yao Fu 《Chemistry (Weinheim an der Bergstrasse, Germany)》2012,18(14):4345-4357
Ni‐catalyzed cross‐coupling of unactivated secondary alkyl halides with alkylboranes provides an efficient way to construct alkyl–alkyl bonds. The mechanism of this reaction with the Ni/ L1 ( L1 =trans‐N,N′‐dimethyl‐1,2‐cyclohexanediamine) system was examined for the first time by using theoretical calculations. The feasible mechanism was found to involve a NiI–NiIII catalytic cycle with three main steps: transmetalation of [NiI( L1 )X] (X=Cl, Br) with 9‐borabicyclo[3.3.1]nonane (9‐BBN)R1 to produce [NiI( L1 )(R1)], oxidative addition of R2X with [NiI( L1 )(R1)] to produce [NiIII( L1 )(R1)(R2)X] through a radical pathway, and C? C reductive elimination to generate the product and [NiI( L1 )X]. The transmetalation step is rate‐determining for both primary and secondary alkyl bromides. KOiBu decreases the activation barrier of the transmetalation step by forming a potassium alkyl boronate salt with alkyl borane. Tertiary alkyl halides are not reactive because the activation barrier of reductive elimination is too high (+34.7 kcal mol?1). On the other hand, the cross‐coupling of alkyl chlorides can be catalyzed by Ni/ L2 ( L2 =trans‐N,N′‐dimethyl‐1,2‐diphenylethane‐1,2‐diamine) because the activation barrier of transmetalation with L2 is lower than that with L1 . Importantly, the Ni0–NiII catalytic cycle is not favored in the present systems because reductive elimination from both singlet and triplet [NiII( L1 )(R1)(R2)] is very difficult. 相似文献
12.
David H. Ringger Ilia J. Kobylianskii Dr. Daniel Serra Prof. Dr. Peter Chen 《Chemistry (Weinheim an der Bergstrasse, Germany)》2014,20(44):14270-14281
The gas‐phase bond‐dissociation energies of a SO2–imidazolylidene leaving group of three gold(I) benzyl imidazolium sulfone complexes are reported (E0=46.6±1.7, 49.6±1.7, and 48.9±2.1 kcal mol?1). Although these energies are similar to each other, they are reproducibly distinguishable. The energy‐resolved collision‐induced dissociation experiments of the three [L]–gold(I) (L=ligand) carbene precursor complexes were performed by using a modified tandem mass spectrometer. The measurements quantitatively describe the structural and electronic effects a p‐methoxy substituent on the benzyl fragment, and trans [NHC] and [P] gold ligands, have towards gold carbene formation. Evidence for the formation of the electrophilic gold carbene in solution was obtained through the stoichiometric and catalytic cyclopropanation of olefins under thermal conditions. The observed cyclopropane yields are dependent on the rate of gold carbene formation, which in turn is influenced by the ligand and substituent. The donation of electron density to the carbene carbon by the p‐methoxy benzyl substituent and [NHC] ligand stabilizes the gold carbene intermediate and lowers the dissociation barrier. Through the careful comparison of gas‐phase and solution chemistry, the results suggest that even gas‐phase leaving‐group bond‐dissociation energy differences of 2–3 kcal mol?1 enormously affect the rate of gold carbene formation in solution, especially when there are competing reactions. The thermal decay of the gold carbene precursor complex was observed to follow first‐order kinetics, whereas cyclopropanation was found to follow pseudo‐first‐order kinetics. Density‐functional‐theory calculations at the M06‐L and BP86‐D3 levels of theory were used to confirm the observed gas‐phase reactivity and model the measured bond‐dissociation energies. 相似文献
13.
In this study, we investigated the C? H bond activation of methane catalyzed by the complex [PtCl4]2?, using the hybrid quantum mechanical/effective fragment potential (EFP) approach. We analyzed the structures, energetic properties, and reaction mechanism involved in the elementary steps that compose the catalytic cycle of the Shilov reaction. Our B3LYP/SBKJC/cc‐pVDZ/EFP results show that the methane activation may proceed through two pathways: (i) electrophilic addition or (ii) direct oxidative addition of the C? H bond of the alkane. The electrophilic addition pathway proceeds in two steps with formation of a σ‐methane complex, with a Gibbs free energy barrier of 24.6 kcal mol?1, followed by the cleavage of the C? H bond, with an energy barrier of 4.3 kcal mol?1. The activation Gibbs free energy, calculated for the methane uptake step was 24.6 kcal mol?1, which is in good agreement with experimental value of 23.1 kcal mol?1 obtained for a related system. The results shows that the activation of the C? H bond promoted by the [PtCl4]2? catalyst in aqueous solution occurs through a direct oxidative addition of the C? H bond, in a single step, with an activation free energy of 25.2 kcal mol?1, as the electrophilic addition pathway leads to the formation of a σ‐methane intermediate that rapidly undergoes decomposition. The inclusion of long‐range solvent effects with polarizable continuum model does not change the activation energies computed at the B3LYP/SBKJC/cc‐pVDZ/EFP level of theory significantly, indicating that the large EFP water cluster used, obtained from Monte Carlo simulations and analysis of the center‐of‐mass radial pair distribution function, captures the most important solvent effects. © 2011 Wiley Periodicals, Inc. J Comput Chem, 2011 相似文献
14.
Dimers of N‐Heterocyclic Carbene Copper,Silver, and Gold Halides: Probing Metallophilic Interactions through Electron Density Based Concepts
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Balazs Pinter Lies Broeckaert Jan Turek Prof. Aleš Růžička Prof. Frank De Proft 《Chemistry (Weinheim an der Bergstrasse, Germany)》2014,20(3):734-744
Homobimetallic metallophilic interactions between copper, silver, and gold‐based [(NHC)MX]‐type complexes (NHC=N‐heterocyclic carbene, i.e, 1,3,4‐trimethyl‐4,5‐dihydro‐1H‐1,2,4‐triazol‐5‐ylidene; X=F, Cl, Br, I) were investigated by means of ab initio interaction energies, Ziegler–Rauk‐type energy‐decomposition analysis, the natural orbital for chemical valence (NOCV) framework, and the noncovalent interaction (NCI) index. It was found that the dimers of these complexes predominantly adopt a head‐to‐tail arrangement with typical M ??? M distance of 3.04–3.64 Å, in good agreement with the experimental X‐ray structure determined for [{(NHC)AuCl}2], which has an Au ??? Au distance of 3.33 Å. The interaction energies between silver‐ and gold‐based monomers are calculated to be about ?25 kcal mol?1, whereas that for the Cu congener is significantly lower (?19.7 kcal mol?1). With the inclusion of thermal and solvent contributions, both of which are destabilizing, by about 15 and 8 kcal mol?1, respectively, an equilibrium process is predicted for the formation of dimer complexes. Energy‐decomposition analysis revealed a dominant electrostatic contribution to the interaction energy, besides significantly stabilizing dispersion and orbital interactions. This electrostatic contribution is rationalized by NHC(δ+) ??? halogen(δ?) interactions between monomers, as demonstrated by electrostatic potentials and derived charges. The dominant NOCV orbital indicates weakening of the π backdonation in the monomers on dimer formation, whereas the second most dominant NOCV represents an electron‐density deformation according to the formation of a very weak M ??? M bond. One of the characteristic signals found in the reduced density gradient versus electron density diagram corresponds to the noncovalent interactions between the metal centers of the monomers in the NCI plots, which is the manifestation of metallophilic interaction. 相似文献
15.
The Beckmann rearrangement (BR) plays an important role in a variety of industries. The mechanism of this reaction rearrangement of oximes with different molecular sizes, specifically, the oximes of formaldehyde (H2C?NOH), Z‐acetaldehyde (CH3HC?NOH), E‐acetaldehyde (CH3HC?NOH) and acetone (CH3)2C?NOH, catalyzed by the Faujasite zeolite is investigated by both the quantum cluster and embedded cluster approaches at the B3LYP level of theory using the 6‐31G (d,p) basis set. To enhance the energetic properties, single point calculations are undertaken at MP2/6‐311G(d,p). The rearrangement step, using the bare cluster model, is the rate determining step of the entire reaction of these oxime molecules of which the energy barrier is between 50–70 kcal mol?1. The more accurate embedded cluster model, in which the effect of the zeolitic framework is included, yields as the rate determining step, the formaldehyde oxime reaction rearrangement with an energy barrier of 50.4 kcal mol?1. With the inclusion of the methyl substitution at the carbon‐end of formaldehyde oxime, the rate determining step of the reaction becomes the 1,2 H‐shift step for Z‐acetaldehyde oxime (30.5 kcal mol?1) and acetone oxime (31.2 kcal mol?1), while, in the E‐acetaldehyde oxime, the rate determining step is either the 1,2 H‐shift (26.2 kcal mol?1) or the rearrangement step (26.6 kcal mol?1). These results signify the important role that the effect of the zeolite framework plays in lowering the activation energy by stabilizing all of the ionic species in the process. It should, however, be noted that the sizeable turnover of a reaction catalyzed by the Brønsted acid site might be delayed by the quantitatively high desorption energy of the product and readsorption of the reactant at the active center. 相似文献
16.
Dr. Sarolta Pilbák Dr. Ödön Farkas Prof. Dr. László Poppe 《Chemistry (Weinheim an der Bergstrasse, Germany)》2012,18(25):7793-7802
Quantum mechanics/molecular mechanics calculations in tyrosine ammonia lyase (TAL) ruled out the hypothetical Friedel–Crafts (FC) route for ammonia elimination from L ‐tyrosine due to the high energy of FC intermediates. The calculated pathway from the zwitterionic L ‐tyrosine‐binding state (0.0 kcal mol?1) to the product‐binding state ((E)‐coumarate+H2N? MIO; ?24.0 kcal mol?1; MIO=3,5‐dihydro‐5‐methylidene‐4H‐imidazol‐4‐one) involves an intermediate (IS, ?19.9 kcal mol?1), which has a covalent bond between the N atom of the substrate and MIO, as well as two transition states (TS1 and TS2). TS1 (14.4 kcal mol?1) corresponds to a proton transfer from the substrate to the N1 atom of MIO by Tyr300? OH. Thus, a tandem nucleophilic activation of the substrate and electrophilic activation of MIO happens. TS2 (5.2 kcal mol?1) indicates a concerted C? N bond breaking of the N‐MIO intermediate and deprotonation of the pro‐S β position by Tyr60. Calculations elucidate the role of enzymic bases (Tyr60 and Tyr300) and other catalytically relevant residues (Asn203, Arg303, and Asn333, Asn435), which are fully conserved in the amino acid sequences and in 3D structures of all known MIO‐containing ammonia lyases and 2,3‐aminomutases. 相似文献
17.
Dr. Zhe Li Yuan‐Ye Jiang Dr. Andrew A. Yeagley James P. Bour Prof. Lei Liu Prof. Jason J. Chruma Prof. Yao Fu 《Chemistry (Weinheim an der Bergstrasse, Germany)》2012,18(45):14527-14538
The Pd‐catalyzed decarboxylative allylation of α‐(diphenylmethylene)imino esters ( 1 ) or allyl diphenylglycinate imines ( 2 ) is an efficient method to construct new C(sp3)? C(sp3) bonds. The detailed mechanism of this reaction was studied by theoretical calculations [ONIOM(B3LYP/LANL2DZ+p:PM6)] combined with experimental observations. The overall catalytic cycle was found to consist of three steps: oxidative addition, decarboxylation, and reductive allylation. The oxidative addition of 1 to [(dba)Pd(PPh3)2] (dba=dibenzylideneacetone) produces an allylpalladium cation and a carboxylate anion with a low activation barrier of +9.1 kcal mol?1. The following rate‐determining decarboxylation proceeds via a solvent‐exposed α‐imino carboxylate anion rather than an O‐ligated allylpalladium carboxylate with an activation barrier of +22.7 kcal mol?1. The 2‐azaallyl anion generated by this decarboxylation attacks the face of the allyl ligand opposite to the Pd center in an outer‐sphere process to produce major product 3 , with a lower activation barrier than that of the minor product 4 . A positive linear Hammett correlation [ρ=1.10 for the PPh3 ligand] with the observed regioselectivity ( 3 versus 4 ) supports an outer‐sphere pathway for the allylation step. When Pd combined with the bis(diphenylphosphino)butane (dppb) ligand is employed as a catalyst, the decarboxylation still proceeds via the free carboxylate anion without direct assistance of the cationic Pd center. Consistent with experimental observations, electron‐withdrawing substituents on 2 were calculated to have lower activation barriers for decarboxylation and, thus, accelerate the overall reaction rates. 相似文献
18.
Zhe Li Dr. Yao Fu Prof. Song‐Lin Zhang Qing‐Xiang Guo Prof. Lei Liu Prof. 《化学:亚洲杂志》2010,5(6):1475-1486
The mechanism of a recently discovered intramolecular Heck‐type coupling of oximes with aryl halides (Angew. Chem. Int. Ed. 2007 , 46, 6325) was systematically studied by using density functional methods enhanced with a polarized continuum solvation model. The overall catalytic cycle of the reaction was found to consist of four steps: oxidative addition, migratory insertion, β‐H elimination, and catalyst regeneration, whereas an alternative base‐promoted C? H activation pathway was determined to be less favorable. Migratory insertion was found to be the rate determining step in the catalytic cycle. The apparent activation barrier of migratory insertion of the (E)‐oxime was +20.5 kcal mol?1, whereas the barrier of (Z)‐oxime was as high as +32.7 kcal mol?1. However, (Z)‐oxime could isomerize to form the more active (E)‐oxime with the assistance of K2CO3, so that both the (E)‐ and (Z)‐oxime substrates could be transformed to the desired product. Our calculations also indicated that the Z product was predominant in the equilibrium of the isomerization of the imine double bond, which constituted the reason for the good Z‐selectivity observed for the reaction. Furthermore, we examined the difference between the intermolecular Heck‐type reactions of imines and of olefins. It was found that in the intermolecular Heck‐type coupling of imines, the apparent activation barrier of migratory insertion was as high as +35 kcal mol?1, which should be the main obstacle of the reaction. The analysis also revealed the main problem for the intermolecular Heck‐type reactions of imines, which was that the breaking of a C?N π bond was much more difficult than the breaking of a C?C π bond. After systematic examination of a series of substituted imines, (Z)‐N‐amino imine and N‐acetyl imine were found to have relatively low barriers of migratory insertion, so that they might be possible substrates for intermolecular Heck‐type coupling. 相似文献
19.
σ‐Insertive Mechanism versus Concerted Non‐insertive Mechanism in the Intramolecular Hydroamination of Aminoalkenes Catalyzed by Phenoxyamine Magnesium Complexes: A Synthetic and Computational Study
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Dr. Xiaoming Zhang Dr. Sven Tobisch Prof. Dr. Kai C. Hultzsch 《Chemistry (Weinheim an der Bergstrasse, Germany)》2015,21(21):7841-7857
The phenoxyamine magnesium complexes [{ONN}MgCH2Ph] ( 4 a : {ONN}=2,4‐tBu2‐6‐(CH2NMeCH2CH2NMe2)C6H2O?; 4 b : {ONN}=4‐tBu‐2‐(CH2NMeCH2CH2NMe2)‐6‐(SiPh3)C6H2O?) have been prepared and investigated with respect to their catalytic activity in the intramolecular hydroamination of aminoalkenes. The sterically more shielded triphenylsilyl‐substituted complex 4 b exhibits better thermal stability and higher catalytic activity. Kinetic investigations using complex 4 b in the cyclisation of 1‐allylcyclohexyl)methylamine ( 5 b ), respectively, 2,2‐dimethylpent‐4‐en‐1‐amine ( 5 c ), reveal a first‐order rate dependence on substrate and catalyst concentration. A significant primary kinetic isotope effect of 3.9±0.2 in the cyclisation of 5 b suggests significant N?H bond disruption in the rate‐determining transition state. The stoichiometric reaction of 4 b with 5 c revealed that at least two substrate molecules are required per magnesium centre to facilitate cyclisation. The reaction mechanism was further scrutinized computationally by examination of two rivalling mechanistic pathways. One scenario involves a coordinated amine molecule assisting in a concerted non‐insertive N?C ring closure with concurrent amino proton transfer from the amine onto the olefin, effectively combining the insertion and protonolysis step to a single step. The alternative mechanistic scenario involves a reversible olefin insertion step followed by rate‐determining protonolysis. DFT reveals that a proton‐assisted concerted N?C/C?H bond‐forming pathway is energetically prohibitive in comparison to the kinetically less demanding σ‐insertive pathway (ΔΔG≠=5.6 kcal mol?1). Thus, the σ‐insertive pathway is likely traversed exclusively. The DFT predicted total barrier of 23.1 kcal mol?1 (relative to the {ONN}Mg pyrrolide catalyst resting state) for magnesium?alkyl bond aminolysis matches the experimentally determined Eyring parameter (ΔG≠=24.1(±0.6) kcal mol?1 (298 K)) gratifyingly well. 相似文献