A Carbazole Derivative Synthesis for Stabilizing the Quadruplex Structure

A new molecule of 3,6‐Bis(1‐methyl‐4‐vinylpyridium iodine)carbazole ( BMVC ) was synthesized for stabilizing the quadruplex structure of human telomeric sequence of d(T₂AG₃)₄ in vitro. Mixing BMVC with the DNA can raise the melting temperature of the d(T₂AG₃)₄ by ～ 13 °C, implying that BMVC could be a useful telomerase inhibitor. In addition, the fluorescence of the BMVC increased significantly upon interacting with the d(T₂AG₃)₄ which may be useful as a G‐quadruplex specific marker.     

Synthesis of a ruthenium(II) polypyridine complex with 1,10-phenanthrolineselenazole as ligand and investigation of its G-quadruplex DNA-binding properties

A new Ru(II) complex, [Ru(bpy)₂L](ClO₄)₂ (bpy?=?2,2′-bipyridine, L?=?1,10-phenanthrolineselenazole), has been synthesized and structurally characterized by elemental analysis, ESI-MS, and ¹H NMR. The interaction of human telomeric oligomer 5′-AG₃(T₂AG₃)₃-3′ with the Ru(II) complex was explored by competition FRET experiment, ?uorescence titration, circular dichroism spectroscopy, thermal denaturation, polymerase chain reaction stop assay, and TRAP assay. The Ru(II) complex can selectively bind to G-quadruplex DNA. The results indicated that the complex not only induces a remarkable conformational change of human telomeric DNA, but also has the ability to stabilize the G-quadruplex.     

A Novel Method for Screening G‐quadruplex Stabilizers to Human Telomeres

We present a simple method based on the Cu²⁺ induced unfolding of G‐quadruplex (G4) of human telomere sequence d[AG₃(T₂AG₃)₃] to screen a number of 3,6‐bis(1‐methyl‐4‐vinylpyridinium)carbazole diiodide (BMVC) analogues for better G4 stabilizers. Using circular dichroism (CD), the screening results suggest that the tri‐cations of 9‐substituted BMVC derivatives are better G4 stabilizers than the bi‐cations of BMVC. In addition, 3,6‐bis(1‐methyl‐4‐vinylpyrazinium)carbazole diiodide (BMVC4) is likely a better core molecule than BMVC for G4 stabilizers.     

Structural Studies Reveal Enantiospecific Recognition of a DNA G‐Quadruplex by a Ruthenium Polypyridyl Complex

By using X‐ray crystallography, we show that the complexes Λ/Δ‐[Ru(TAP)₂(11‐CN‐dppz)]²⁺ (TAP=1,4,5,8‐tetraazaphenanthrene, dppz=dipyridophenazine) bind DNA G‐quadruplex in an enantiospecific manner that parallels the specificity of these complexes with duplex DNA. The Λ complex crystallises with the normally parallel stranded d(TAGGGTTA) tetraplex to give the first such antiparallel strand assembly in which syn‐guanosine is adjacent to the complex at the 5′ end of the quadruplex core. SRCD measurements confirm that the same conformational switch occurs in solution. The Δ enantiomer, by contrast, is present in the structure but stacked at the ends of the assembly. In addition, we report the structure of Λ‐[Ru(phen)₂(11‐CN‐dppz)]²⁺ bound to d(TCGGCGCCGA), a duplex‐forming sequence, and use both structural models to provide insight into the motif‐specific luminescence response of the isostructural phen analogue enantiomers.     

Effect of the Ancillary Ligands on the Spectral Properties and G‐Quadruplexes DNA Binding Behavior: A Combined Experimental and Theoretical Study

In an effort to explore the effect of ancillary ligands on the spectral properties and overall G‐quadruplex DNA binding behavior, two new ruthenium(II) complexes [Ru(phen)₂(dppzi)]²⁺ ( 1 ) and [Ru(dmp)₂(dppzi)]²⁺ ( 2 ) (phen=1,10‐phenanthroline, dmp=2,9‐dimethyl‐1,10‐phenanthroline, dppzi=dipyrido[3,2‐a:2′,3′‐c]phenazine‐10,11‐imidazole) were prepared. Complex 1 can emit luminescence in the absence and presence of G‐quadruplexes DNA. However, with ?CH₃ substituent on the 2‐ and 9‐positions of the phen ancillary ligand, no detectable luminescence is observed for complex 2 in any organic solvent or in the absence and/or presence of G‐quadruplex DNA. Experimental and molecular docking studies indicated that both complexes interacted with the human telomeric repeat AG3(T2AG3)3 (22AG) G‐quadruplex with the stoichiometric ratio of 1:1, but the two complexes showed different G‐quadruplex DNA binding affinity. Complex 1 binds to the G‐quadruplexes DNA more tightly than complex 2 does. Our results demonstrate that methyl groups on the phen ancillary ligand significantly affect the spectral properties and the overall DNA binding behavior of the complexes. Such difference in spectral properties and DNA binding affinities of these two complexes can be reasonably explained by DFT/TD‐DFT calculations. This work provides guidance not only on exploring the G‐quadruplexes DNA binding behavior of complexes, but also understanding the unique luminescence mechanism.     

Synthesis and photoreactions of polyesters containing triazene and cinnamylidene malonyl units

The synthesis and photoreactions of polyesters containing the photolabile triazene group (Ph NN NR₂) as well as photocrosslinkable units based on substituted cinnamylidene malonyl moieties are reported. The polyesters were obtained by reacting a triazene containing difunctional alcohol with different substituted cinnamylidene malonic acid dichlorides. Irradiation at λ > 395 nm enables selective photocrosslinking of the cinnamylidene malonyl ester units via [2+2]π‐cycloaddition without affecting the triazene units. The photocrosslinking reaction of the triazene containing polyesters as well as triazene‐free reference polyesters were investigated by UV and IR spectroscopy. After selective photocrosslinking the irradiated polymers became insoluble and no longer exhibited a T_g below decomposition temperature. The crosslinked triazene containing polyesters show strong absorption at λ = 308 nm and are therefore interesting candidates for applications using XeCl excimer laser ablation. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 1903–1910, 2000     

Inducement and stabilization of G-quadruplex DNA by a thiophene-containing dinuclear ruthenium(II) complex

G-quadruplex structures are attractive targets for the development of anticancer drugs, as their formation in human telomere could impair telomerase activity, thus inducing apoptosis in cancer cells. In this work, a thiophene-containing dinuclear ruthenium(II) complex, [Ru₂(bpy)₄(H₂bipt)]⁴⁺ {bpy = 2,2′-bipyridine, H₂bipt = 2,5-bis[1,10]phenanthrolin[4,5-f]-(imidazol-2-yl)thiophene}, was prepared and the interaction between the complex and human telomeric DNA oligomers 5′-G₃(T₂AG₃)₃-3′ (HTG21) has been investigated by UV-Vis, fluorescence and circular dichroism (CD) spectroscopy, fluorescence resonance energy transfer (FRET) melting assay, polymerase chain reaction (PCR) stop assay, fluorescent intercalator displacement (FID) titrations, Job plot and color reaction studies. The results indicate that the complex can well induce and stabilize the formation of antiparallel G-quadruplex of telomeric DNA in the presence or absence of metal cations, and the ΔT_m value of the G-quadruplex DNA treated with the complex was obtained to be 12.8 °C even at levels of 50-fold molar of duplex DNA (calf-thymus DNA), suggesting that the complex exhibits higher G-quadruplex DNA selectivity over duplex DNA. The complex shows high interaction ability with G-quadruplex DNA at (1.17 ± 0.12) × 10⁷ M^?1 binding affinity using a 2:1 [complex]/[quadruplex] binding mode ratio. A novel visual method has been developed here for making a distinction between G-quadruplex DNA and duplex DNA by our ruthenium complex binding hemin to form the hemin-G-quadruplex DNAzyme.     

Detection of secondary structures in 17-mer Ru(II)-labeled single-stranded oligonucleotides from luminescence lifetime studies

The emission properties of a non intercalating complex, [Ru(TAP)2(dip)]2+ (TAP = 1,4,5,8-tetraazaphenanthrene; dip = 4,7-diphenyl-1,10-phenanthroline), tethered to 17-mer single-stranded oligodeoxyribonucleotides (ODNs) either in the middle or at the 5'-end of the sequence, are determined. The results highlight the fact that the luminescence of this metallic compound is sufficiently sensitive to its microenvironment to probe self-structuration of these short single-stranded ODNs. It is shown that the weighted averaged emission lifetimes (tau(M)) along with the quenching rate constants of luminescence by oxygen reflect particularly well different structures adopted by the different ODNs sequences. The determination of these parameters thus offers an elegant way to examine possible structurations of synthetic single-stranded ODNs that play important roles in biological applications.     

Insight into How Telomeric G‐Quadruplexes Enhance the Peroxidase Activity of Cellular Hemin

The toxic oxidative damage of G‐quadruplexes (G4), linked to neurodegenerative diseases, may arise from their ability to bind and oxidatively activate cellular hemin. However, there have been no precise studies on how telomeric G4 enhances the low intrinsic peroxidase activity of hemin. Herein, a label‐free and nanopore‐based strategy was developed to explore the enhancement mechanism of peroxidase activity of hemin induced by telomeric G4 (d(TTAGGG)_n). The nanopore‐based strategy demonstrated that there were simultaneously two different binding modes of telomere G4 to hemin. At the single‐molecule level, it was found that the hybrid structural telomeric G4 directly binds to hemin (the affinity constant (K_a)≈10⁶ m ^?1) to form a tight complex, and some of them underwent a topological change to a parallel structure with an enhancement of K_a to approximately 10⁷ m ^?1. Through detailed analysis of the topology and peroxidase activity and molecular modeling investigations, the parallel telomere G4/hemin DNAzyme structure was proven to be preferable for high peroxidase activity. Upon strong π–π stacking, the parallel structural telomere G4 supplied a key axial ligand to the hemin iron, which accelerated the intermediate compound formation with H₂O₂ in the catalytic cycle. Our studies developed a label‐free and single‐molecule strategy to fundamentally understand the catalytic activity and mechanism of telomeric DNAzyme, which provides some support for utilizing the toxic, oxidative‐damage property in cellular oxidative disease and anticancer therapeutics.     

Stabilization of G‐Quadruplex DNA,Inhibition of Telomerase Activity and Live Cell Imaging Studies of Chiral Ruthenium(II) Complexes

Telomerase inhibition is an attractive strategy for cancer chemotherapy. In the current study, we have synthesized and characterized two chiral ruthenium(II) complexes, namely, Λ‐[Ru(phen)₂(p‐MOPIP)]²⁺ and Δ‐[Ru(phen)₂(p‐MOPIP)]²⁺, where phen is 1,10‐phenanthroline and p‐MOPIP is 2‐(4‐methoxyphenyl)‐imidazo[4,5f][1,10]phenanthroline. The chiral selectivity of the compounds and their ability to discriminate quadruplex DNA were investigated by using UV/Vis, fluorescence spectroscopy, circular dichroism spectroscopy, fluorescence resonance energy transfer melting assay, polymerase chain reaction stop assay and telomerase repeat amplification protocol. The results indicate that the two chiral compounds could induce and stabilize the formation of antiparallel G‐quadruplexes of telomeric DNA in the presence or absence of metal cations. We report the remarkable ability of the two complexes Λ‐[Ru(phen)₂(p‐MOPIP)]²⁺ and Δ‐[Ru(phen)₂(p‐MOPIP)]²⁺ to stabilize selectively G‐quadruplex DNA; the former is a better G‐quadruplex binder than the latter. The anticancer activities of these complexes were evaluated by using the MTT assay. Interestingly, the antiproliferative activity of Λ‐[Ru(phen)₂(p‐MOPIP)]²⁺ was higher than that of Δ‐[Ru(phen)₂(p‐MOPIP)]²⁺, and Λ‐[Ru(phen)₂(p‐MOPIP)]²⁺ showed a significant antitumor activity in HepG2 cells. The status of the nuclei in Λ/Δ‐[Ru(phen)₂(p‐MOPIP)]²⁺‐treated HepG2 cells was investigated by using real‐time living cell microscopy to determine the effects of Λ/Δ‐[Ru(phen)₂(p‐MOPIP)]²⁺ on intracellular accumulation. The results show that Λ/Δ‐[Ru(phen)₂(p‐MOPIP)]²⁺ can be taken up by HepG2 cells and can enter into the cytoplasm as well as accumulate in the nuclei; this suggests that the nuclei were the cellular targets of Λ/Δ‐[Ru(phen)₂(p‐MOPIP)]²⁺.     

Assessing a Spectroelectrochemical Sensor’s Performance for Detecting [Ru(bpy)3]2+ in Natural and Treated Water

A spectroelectrochemical sensor that combines three modes of selectivity in a single device was evaluated in natural and treated water samples using tris‐(2,2′‐bipyridyl) ruthenium(II) dichloride hexahydrate, [Ru(bpy)₃]²⁺, as a model analyte. The sensor was an optically transparent indium tin oxide (ITO) electrode coated with a thin film of partially sulfonated polystyrene‐block‐poly(ethylene‐ran‐butylene)‐block‐polystyrene (SSEBS). As the potential of the ITO electrode was cycled from +0.7 to +1.3 V, the analyte changed from the colored [Ru(bpy)₃]²⁺ complex to colorless [Ru(bpy)₃]³⁺ complex and the change in absorbance at 450 nm was used as the optical signal for quantification. Calibration curves were obtained for [Ru(bpy)₃]²⁺ in natural well water, river water and treated tap water with detection limits of 108, 139 and 264 nM, respectively. A standard addition method was developed to determine an ‘unknown’ spike addition concentration of [Ru(bpy)₃]²⁺ in well water. The spectroelectrochemical sensor determined the concentration of [Ru(bpy)₃]²⁺ spiked into a sample of Hanford well water to be 0.39±0.03 µM versus the actual concentration of 0.40 µM.     

Microanalysis of oligodeoxynucleotides by cathodic stripping voltammetry at amalgam-alloy surfaces in the presence of copper ions

The application of gold amalgam-alloy electrode (AuAE) for a sensitive voltammetric detection of different oligodeoxynucleotides (ODNs) containing the purine units within the ODN-chains in the presence of copper is described. The detection of ODNs is based on the following procedure: (i) the first step includes an acidic hydrolysis of the ODN (ahODN) samples performing the release of the purine bases from ODN-chain; (ii) the second step includes an electrochemical accumulation of the complex of the purine base residues released from ODN-chain with copper ions Cu(I) (ahODN-Cu(I) complex) at the potential of reduction of copper ions Cu(II) on the amalgam-alloy electrode surfaces; (iii) finally followed the cathodic stripping of the electrochemically accumulated ahODN-Cu(I) complex from the electrode surface. The proposed electrochemical method was used for: (a) detection of different ODN lengths containing only adenine units (the number of adenine units within the ODN-chains was changed from 10 to 80), and (b) determination of the number of purine units within the 30-mer ODNs containing a random sequence segments involving both the purine and pyrimidine units. The intensity of the cathodic stripping current density peak (j_CSP) of the electrochemically accumulated ahODN-Cu(I) complex increased linearly with the increasing number of purine units within the ODN-chains. We observed a good correlation between the percentage content of purine units to the whole length of different 30-mer ODNs and the percentage content of the intensity of the j_CSP of the electrochemically accumulated 30-mer ahODN-Cu(I) complexes. The detection of acid hydrolysed 80-mer (A₈₀) in the bulk solution and in a 20-μl volume is possible down to 200 pM and 2 nM at the AuAE, respectively. For the shortest 10-mer (A₁₀) a detectable value of 5 nM in the bulk solution on the AuAE was observed. The sensitive detection of different ODNs containing the purine units in their chains in the presence of copper can be also performed at the platinum amalgam-alloy (PtAE) and copper amalgam-alloy (CuAE) contrary to a lower sensitivity at the silver amalgam-alloy (AgAE) electrode.     

Stabilization of Human Telomeric G‐Quadruplex and Inhibition of Telomerase Activity by Propeller‐Shaped Trinuclear PtII Complexes

Two novel propeller‐shaped, trigeminal‐ligand‐containing, flexible trinuclear Pt^II complexes, {[Pt(dien)]₃(ptp)}(NO₃)₆ ( 1 ) and {[Pt(dpa)]₃(ptp)}(NO₃)₆ ( 2 ) (dien: diethylenetriamine; dpa: bis‐(2‐pyridylmethyl)amine; ptp: 6′‐(pyridin‐3‐yl)‐3,2′:4′,3′′‐terpyridine), have been designed and synthesized, and their interactions with G‐quadruplex (G4) sequences are characterized. A combination of biophysical and biochemical assays reveals that both Pt^II complexes exhibit higher affinity for human telomeric (hTel) and c‐myc promoter G4 sequences than duplex DNA. Complex 1 binds and stabilizes hTel G4 sequence more effectively than complex 2 . Both complexes are found to induce and stabilize either antiparallel or parallel conformation of G4 structures. Molecular docking studies indicate that complex 1 binds into the large groove of the antiparallel hTel G4 structure (PDB ID: 143D) and complex 2 stacks onto the exposed G‐quartet of the parallel hTel G4 structure (PDB ID: 1KF1). Telomeric repeat amplification protocol assays demonstrate that both complexes are good telomerase inhibitors, with IC₅₀ values of (16.0±0.4) μM and (4.20±0.25) μM for 1 and 2 , respectively. Collectively, the results suggest that these propeller‐shaped flexible trinuclear Pt^II complexes are effective and selective G4 binders and good telomerase inhibitors. This work provides valuable information for the interaction between multinuclear metal complexes with G4 DNA.     

Ruthenium Complex “Light Switches” that are Selective for Different G‐Quadruplex Structures

Recognition and regulation of G‐quadruplex nucleic acid structures is an important goal for the development of chemical tools and medicinal agents. The addition of a bromo‐substituent to the dipyridylphenazine (dppz) ligands in the photophysical “light switch”, [Ru(bpy)₂dppz]²⁺, and the photochemical “light switch”, [Ru(bpy)₂dmdppz]²⁺, creates compounds with increased selectivity for an intermolecular parallel G‐quadruplex and the mixed‐hybrid G‐quadruplex, respectively. When [Ru(bpy)₂dppz‐Br]²⁺ and [Ru(bpy)₂dmdppz‐Br]²⁺ are incubated with the G‐quadruplexes, they have a stabilizing effect on the DNA structures. Activation of [Ru(bpy)₂dmdppz‐Br]²⁺ with light results in covalent adduct formation with the DNA. These complexes demonstrate that subtle chemical modifications of Ru^II complexes can alter G‐quadruplex selectivity, and could be useful for the rational design of in vivo G‐quadruplex probes.     

Molecular Recognition of the Hybrid‐2 Human Telomeric G‐Quadruplex by Epiberberine: Insights into Conversion of Telomeric G‐Quadruplex Structures

Human telomeres can form DNA G‐quadruplex (G4), an attractive target for anticancer drugs. Human telomeric G4s bear inherent structure polymorphism, challenging for understanding specific recognition by ligands or proteins. Protoberberines are medicinal natural‐products known to stabilize telomeric G4s and inhibit telomerase. Here we report epiberberine (EPI) specifically recognizes the hybrid‐2 telomeric G4 predominant in physiologically relevant K⁺ solution and converts other telomeric G4 forms to hybrid‐2, the first such example reported. Our NMR structure in K⁺ solution shows EPI binding induces extensive rearrangement of the previously disordered 5′‐flanking and loop segments to form an unprecedented four‐layer binding pocket specific to the hybrid‐2 telomeric G4; EPI recruits the (?1) adenine to form a “quasi‐triad” intercalated between the external tetrad and a T:T:A triad, capped by a T:T base pair. Our study provides structural basis for small‐molecule drug design targeting the human telomeric G4.     

Synthesen und Strukturen von Bis(4,4′‐t‐butyl‐2,2′‐bipyridin)‐Ruthenium(II)‐Komplexen mit funktionellen Derivaten des Tetramethyl‐bibenzimidazols

Syntheses and Structures of Bis(4,4′‐t‐butyl‐2,2′‐bipyridine) Ruthenium(II) Complexes with functional Derivatives of Tetramethyl‐bibenzimidazole [(tbbpy)₂RuCl₂] reacts with dinitro‐tetramethylbibenzimidazole ( A ) in DMF to form the complex [(tbbpy)₂Ru( A )](PF₆)₂ ( 1a ) (tbbpy: bis(4,4′‐t‐butyl)‐2,2′bipyridine). Exchange of the two PF₆^? anions by a mixture of tetrafluor‐terephthalat/tetrafluor‐terephthalic acid results in the formation of 1b in which an extended hydrogen‐bonded network is formed. According to the ¹H NMR spectra and X‐ray analyses of both 1a and 1b , the two nitro groups of the bibenzimidazole ligand are situated at the periphery of the complex in cis position to each other. Reduction of the nitro groups in 1a with SnCl₂/HCl results in the corresponding diamino complex 2 which is a useful starting product for further functionalization reactions. Substitution of the two amino groups in 2 by bromide or iodide via Sandmeyer reaction results in the crystalline complexes [(tbbpy)₂Ru( C )](PF₆)₂ and [(tbbpy)₂Ru( D )](PF₆)₂ ( C : dibromo‐tetrabibenzimidazole, D : diiodo‐tetrabibenzimidazole). Furthermore, 2 readily reacts with 4‐t‐butyl‐salicylaldehyde or pyridine‐2‐carbaldehyde under formation of the corresponding Schiff base Ru^II complexes 5 and 6 . ¹H NMR spectra show that the substituents (NH₂, Br, I, azomethines) in 2 ‐ 6 are also situated in peripheral positions, cis to each other. The solid state structure of both 2 , and 3 , determined by X‐ray analyses confirm this structure. In addition, the X‐ray diffraction analyses of single crystals of the complexes [(tri‐t‐butyl‐terpy)(Cl)Ru( A )] ( 7 ) and [( A )PtCl₂] ( 8 ) display also that the nitro groups in these complexes are in a cis‐arrangement.     

Metallomacrocycles with a Difference: Macrocyclic Complexes with Exocyclic Ruthenium(II)‐Containing Domains

The templated synthesis of organic macrocycles containing rings of up to 96 atoms and three 2,2′‐bipyridine (bpy) units is described. Starting with the bpy‐centred ligands 5,5′‐bis[3‐(1,4‐dioxahept‐6‐enylphenyl)]‐2,2′‐bipyridine and 5,5′‐bis[3‐(1,4,7‐trioxadec‐9‐enylphenyl)]‐2,2′‐bipyridine, we have applied Grubbs’ methodology to couple the terminal alkene units of the coordinated ligands in [FeL₃]²⁺ complexes. Hydrogenation and demetallation of the iron(II)‐containing macrocyclic complexes results in the isolation of large organic macrocycles. The latter bind {Ru(bpy)₂} units to give macrocyclic complexes with exocyclic ruthenium(II)‐containing domains. The complex [Ru(bpy)₂(L)]²⁺ (isolated as the hexafluorophosphate salt), in which L=5,5′‐bis[3‐(1,4,7,10‐tetraoxatridec‐12‐enylphenyl)]‐2,2′‐bipyridine, undergoes intramolecular ring‐closing metathesis to yield a macrocycle which retains the exocyclic {Ru(bpy)₂} unit. The poly(ethyleneoxy) domains in the latter macrocycle readily scavenge sodium ions, as proven by single‐crystal X‐ray diffraction and atomic absorption spectroscopy data for the bulk sample. In addition to the new compounds, a series of model complexes have been fully characterized, and representative single‐crystal X‐ray structural data are presented for iron(II) and ruthenium(II) acyclic and macrocyclic species.     

Metal‐catalyzed reversible conversion between chemical and electrical energy designed towards a sustainable society

Proton dissociation of an aqua‐Ru‐quinone complex, [Ru(trpy)(q)(OH₂)]²⁺ (trpy = 2,2′ : 6′,2″‐terpyridine, q = 3,5‐di‐t‐butylquinone) proceeded in two steps (pK_a = 5.5 and ca. 10.5). The first step simply produced [Ru(trpy)(q)(OH)]⁺, while the second one gave an unusual oxyl radical complex, [Ru(trpy)(sq)(O^?.)]⁰ (sq = 3,5‐di‐t‐butylsemiquinone), owing to an intramolecular electron transfer from the resultant O^2? to q. A dinuclear Ru complex bridged by an anthracene framework, [Ru₂(btpyan)(q)₂(OH)₂]²⁺ (btpyan = 1,8‐bis(2,2′‐terpyridyl)anthracene), was prepared to place two Ru(trpy)(q)(OH) groups at a close distance. Deprotonation of the two hydroxy protons of [Ru₂(btpyan)(q)₂(OH)₂]²⁺ generated two oxyl radical Ru‐O^?. groups, which worked as a precursor for O₂ evolution in the oxidation of water. The [Ru₂(btpyan)(q)₂(OH)₂](SbF₆)₂ modified ITO electrode effectively catalyzed four‐electron oxidation of water to evolve O₂ (TON = 33500) under electrolysis at +1.70 V in H₂O (pH 4.0). Various physical measurements and DFT calculations indicated that a radical coupling between two Ru(sq)(O^?.) groups forms a (cat)Ru‐O‐O‐Ru(sq) (cat = 3,5‐di‐t‐butylcathechol) framework with a μ‐superoxo bond. Successive removal of four electrons from the cat, sq, and superoxo groups of [Ru₂(btpyan)(cat)(sq)(μ‐O₂^?)]⁰ assisted with an attack of two water (or OH^?) to Ru centers, which causes smooth O₂ evolution with regeneration of [Ru₂(btpyan)(q)₂(OH)₂]²⁺. Deprotonation of an Ru‐quinone‐ammonia complex also gave the corresponding Ru‐semiquinone‐aminyl radical. The oxidized form of the latter showed a high catalytic activity towards the oxidation of methanol in the presence of base. Three complexes, [Ru(bpy)₂(CO)₂]²⁺, [Ru(bpy)₂(CO)(C(O)OH)]⁺, and [Ru(bpy)₂(CO)(CO₂)]⁰ exist as an equilibrium mixture in water. Treatment of [Ru(bpy)₂(CO)₂]²⁺ with BH₄^? gave [Ru(bpy)₂(CO)(C(O)H)]⁺, [Ru(bpy)₂(CO)(CH₂OH)]⁺, and [Ru(bpy)₂(CO)(OH₂)]²⁺ with generation of CH₃OH in aqueous conditions. Based on these results, a reasonable catalytic pathway from CO₂ to CH₃OH in electro‐ and photochemical CO₂ reduction is proposed. A new pbn (pbn = 2‐pyridylbenzo[b]‐1,5‐naphthyridine) ligand was designed as a renewable hydride donor for the six‐electron reduction of CO₂. A series of [Ru(bpy)_3‐n(pbn)_n]²⁺ (n = 1, 2, 3) complexes undergoes photochemical two‐ (n = 1), four‐ (n = 2), and six‐electron reductions (n = 3) under irradiation of visible light in the presence of N(CH₂CH₂OH)₃. © 2009 The Japan Chemical Journal Forum and Wiley Periodicals, Inc. Chem Rec 9: 169–186; 2009: Published online in Wiley InterScience ( www.interscience.wiley.com ) DOI 10.1002/tcr.200800039     

Involvement of Long‐Lived Intermediate States in the Complex Folding Pathway of the Human Telomeric G‐Quadruplex

The energy landscapes of human telomeric G‐quadruplexes are complex, and their folding pathways have remained largely unexplored. By using real‐time NMR spectroscopy, we investigated the K⁺‐induced folding of the human telomeric DNA sequence 5′‐TTGGG(TTAGGG)₃A‐3′. Three long‐lived states were detected during folding: a major conformation (hybrid‐1), a previously structurally uncharacterized minor conformation (hybrid‐2), and a partially unfolded state. The minor hybrid‐2 conformation is formed faster than the more stable hybrid‐1 conformation. Equilibration of the two states is slow and proceeds via a partially unfolded intermediate state, which can be described as an ensemble of hairpin‐like structures.     

Photophysical Properties of Ruthenium(II) Polypyridyl DNA Intercalators: Effects of the Molecular Surroundings Investigated by Theory

The environmental effects on the structural and photophysical properties of [Ru(L)₂(dppz)]²⁺ complexes (L=bpy=2,2′‐bipyridine, phen=1,10‐phenanthroline, tap=1,4,5,8‐tetraazaphenanthrene; dppz=dipyrido[3,3‐a:2′,3′‐c]phenazine), used as DNA intercalators, have been studied by means of DFT, time‐dependent DFT, and quantum mechanics/molecular mechanics calculations. The electronic characteristics of the low‐lying triplet excited states in water, acetonitrile, and DNA have been investigated to decipher the influence of the environment on the luminescent behavior of this class of molecules. The lowest triplet intra‐ligand (IL) excited state calculated at λ≈800 nm for the three complexes and localized on the dppz ligand is not very sensitive to the environment and is available for electron transfer from a guanine nucleobase. Whereas the lowest triplet metal‐to‐ligand charge‐transfer (³MLCT) states remain localized on the ancillary ligand (tap) in [Ru(tap)₂(dppz)]²⁺, regardless of the environment, their character is drastically modified in the other complexes [Ru(phen)₂(dppz)]²⁺ and [Ru(bpy)₂(dppz)]²⁺ upon going from acetonitrile (MLCT_dppz/phen or MLCT_dppz/bpy) to water (MLCT_dppz) and DNA (MLCT_phen and MLCT_bpy). The change in the character of the low‐lying ³MLCT states accompanying nuclear relaxation in the excited state controls the emissive properties of the complexes in water, acetonitrile, and DNA. The light‐switching effect has been rationalized on the basis of environment‐induced control of the electronic density distributed in the lowest triplet excited states.