The Interplay between Steric and Electronic Effects in SN2 Reactions

Myths of steric hindrance : In contrast with current opinion, energy decomposition analysis shows that the presence of bulky substituents at carbon leads to the release of steric repulsion in the transition state shown in the graphic. It is rather the weakening of the electrostatic attraction, and in particular the loss of attractive orbital interactions, that are responsible for the activation barrier.

     

Self‐Assembly of Chiral Propeller‐like Supermolecules with Unusual “Sergeants‐and‐Soldiers” and “Majority‐Rules” Effects

Chiral amplification is an interesting phenomenon in supramolecular chemistry mainly observed in complicated systems in which cooperative effect dominate. Herein, chiral, supramolecular, propeller‐like architectures have been constructed through coassembly of an achiral disk‐shaped molecule and chiral amino acid derivatives driven by intermolecular hydrogen bonding. Both the “sergeants‐and‐soldiers” principle and “majority‐rules” effect are applicable in these discrete four‐component supermolecules, which are the simplest supramolecular system ever reported that exhibit chiral amplification.     

Comment on “Realization of Lewis Basic Sodium Anion in the NaBH3− Cluster”

We challenge the interpretation of the chemical bond in NaBH₃^? proposed by Liu et al. We argue that NaBH₃^? has an electron‐sharing Na?BH₃^? covalent bond rather than a dative bond Na^?→BH₃.     

A “Distorted‐BODIPY”‐Based Fluorescent Probe for Imaging of Cellular Viscosity in Live Cells

Cellular viscosity is a critical factor in governing diffusion‐mediated cellular processes and is linked to a number of diseases and pathologies. Fluorescent molecular rotors (FMRs) have recently been developed to determine viscosity in solutions or biological fluid. Herein, we report a “distorted‐BODIPY”‐based probe BV‐1 for cellular viscosity, which is different from the conventional “pure rotors”. In BV‐1 , the internal steric hindrance between the meso‐CHO group and the 1,7‐dimethyl group forced the boron–dipyrrin framework to be distorted, which mainly caused nonradiative deactivation in low‐viscosity environment. BV‐1 gave high sensitivity (x=0.62) together with stringent selectivity to viscosity, thus enabling viscosity mapping in live cells. Significantly, the increase of cytoplasmic viscosity during apoptosis was observed by BV‐1 in real time.     

Computational SN2‐Type Mechanism for the Difluoromethylation of Lithium Enolate with Fluoroform through Bimetallic C−F Bond Dual Activation

The reaction mechanism for difluoromethylation of lithium enolates with fluoroform was analyzed computationally (DFT calculations with the artificial force induced reaction (AFIR) method and solvation model based on density (SMD) solvation model (THF)), showing an S_N2‐type carbon–carbon bond formation; the “bimetallic” lithium enolate and lithium trifluoromethyl carbenoid exert the C?F bond “dual” activation, in contrast to the monometallic butterfly‐shaped carbenoid in the Simmons–Smith reaction. Lithium enolates, generated by the reaction of 2 equiv. of lithium hexamethyldisilazide (rather than 1 or 3 equiv.) with the cheap difluoromethylating species fluoroform, are the most useful alkali metal intermediates for the synthesis of pharmaceutically important α‐difluoromethylated carbonyl products.     

Dynamical Bifurcation in Gas‐Phase XH− + CH3Y SN2 Reactions: The Role of Energy Flow and Redistribution in Avoiding the Minimum Energy Path

The gas‐phase reactions of XH^? (X=O, S) + CH₃Y (Y=F, Cl, Br) span nearly the whole range of S_N2 pathways, and show an intrinsic reaction coordinate (IRC) (minimum energy path) with a deep well owing to the CH₃XH???Y^? (or CH₃S^????HF) hydrogen‐bonded postreaction complex. MP2 quasiclassical‐type direct dynamics starting at the [HX???CH₃???Y]^? transition‐state (TS) structure reveal distinct mechanistic behaviors. Trajectories that yield the separated CH₃XH+Y^? (or CH₃S^?+HF) products directly are non‐IRC, whereas those that sample the CH₃XH???Y^? (or CH₃S^????HF) complex are IRC. The IRCIRC/non‐IRC ratios of 90:10, 40:60, 25:75, 2:98, 0:100, and 0:100 are obtained for (X, Y)=(S, F), (O, F), (S, Cl), (S, Br), (O, Cl), and (O, Br), respectively. The properties of the energy profiles after the TS cannot provide a rationalization of these results. Analysis of the energy flow in dynamics shows that the trajectories cross a dynamical bifurcation, and that the inability to follow the minimum energy path arises from long vibration periods of the X?C???Y bending mode. The partition of the available energy to the products into vibrational, rotational, and translational energies reveals that if the vibrational contribution is more than 80 %, non‐IRC behavior dominates, unless the relative fraction of the rotational and translational components is similar, in which case a richer dynamical mechanism is shown, with an IRC/non‐IRC ratio that correlates to this relative fraction.     

Reactivity of Dialumane and “Dialumene” Compounds toward Alkenes

The reactions of dialumane [L(thf)Al? Al(thf)L] ( 1 , L=[{(2,6‐iPr₂C₆H₃)NC(Me)}₂]^2?) with stilbene and styrene afforded the oxidation/insertion products [L(thf)Al(CH(Ph)? CH(Ph))AlL] ( 2 ) and [L(thf)Al(CH(Ph)? CH₂)Al(thf)L] ( 3 ), respectively. In the presence of Na metal, precursor 1 reacted with butadienes, possibly through the reduced “dialumene” or the “carbene‐like” :AlL species, to yield aluminacyclopentenes [LAl(CH₂C(Me)?C(Me)CH₂)Na]_n ( 4 a ) and [Na(dme)₃][LAl(CH₂C(Me)?CHCH₂)] ( 4 b , dme=dimethoxyethane) as [1+4] cycloaddition products, as well as the [2+4] cycloaddition product 1,6‐dialumina‐3,8‐cyclodecadiene, [{Na(dme)}₂][LAl(CH₂C(Me)?C(Me)CH₂)₂AlL] ( 5 ). The possible mechanisms of the cycloaddition reactions were studied by using DFT computations.     

Judicious Ligand Design in Ruthenium Polypyridyl CO2 Reduction Catalysts to Enhance Reactivity by Steric and Electronic Effects

A series of Ru^II polypyridyl complexes of the structural design [Ru^II(R?tpy)(NN)(CH₃CN)]²⁺ (R?tpy=2,2′:6′,2′′‐terpyridine (R=H) or 4,4′,4′′‐tri‐tert‐butyl‐2,2′:6′,2′′‐terpyridine (R=tBu); NN=2,2′‐bipyridine with methyl substituents in various positions) have been synthesized and analyzed for their ability to function as electrocatalysts for the reduction of CO₂ to CO. Detailed electrochemical analyses establish how substitutions at different ring positions of the bipyridine and terpyridine ligands can have profound electronic and, even more importantly, steric effects that determine the complexes’ reactivities. Whereas electron‐donating groups para to the heteroatoms exhibit the expected electronic effect, with an increase in turnover frequencies at increased overpotential, the introduction of a methyl group at the ortho position of NN imposes drastic steric effects. Two complexes, [Ru^II(tpy)(6‐mbpy)(CH₃CN)]²⁺ (trans‐[ 3 ]²⁺; 6‐mbpy=6‐methyl‐2,2′‐bipyridine) and [Ru^II(tBu?tpy)(6‐mbpy)(CH₃CN)]²⁺ (trans‐[ 4 ]²⁺), in which the methyl group of the 6‐mbpy ligand is trans to the CH₃CN ligand, show electrocatalytic CO₂ reduction at a previously unreactive oxidation state of the complex. This low overpotential pathway follows an ECE mechanism (electron transfer–chemical reaction–electron transfer), and is a direct result of steric interactions that facilitate CH₃CN ligand dissociation, CO₂ coordination, and ultimately catalytic turnover at the first reduction potential of the complexes. All experimental observations are rigorously corroborated by DFT calculations.     

Solvent effects on SN2 reaction between substituted benzyl chloride and chloride ion

The effects of solvent on S_N2 reaction between some substituted benzyl chlorides and chloride ion have been investigated by DFT and ab initio methods using the polarizabale continuum model. The activation energies are higher in the solution media relative to the gas phase and grow by the increase in the dielectric constant of solvent. The complexation energies in solution media are smaller than those in the gas phase and reduce with increasing the dielectric constant. The energy data are in good agreement with the geometrical parameters and substituent constants. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Reply to “Comment on the Comparative Use of the Electron Density and Its Laplacian”

In our reply to the preceding comment by Richard Bader we show that the statements of the author are not justified and that he contradicts his own previous work.     

An Allosteric Receptor by Simultaneous “Casting” and “Molding” in a Dynamic Combinatorial Library

Allosteric synthetic receptors are difficult to access by design. Herein we report a dynamic combinatorial strategy towards such systems based on the simultaneous use of two different templates. Through a process of simultaneous casting (the assembly of a library member around a template) and molding (the assembly of a library member inside the binding pocket of a template), a Russian‐doll‐like termolecular complex was obtained with remarkable selectivity. Analysis of the stepwise formation of the complex indicates that binding of the two partners by the central macrocycle exhibits significant positive cooperativity. Such allosteric systems represent hubs that may have considerable potential in systems chemistry.     

DFT and local MP2 study of switching process in a pH controllable molecular “shuttle”

A pH controllable molecular “shuttle,” comprising of dibenzo 24 crown‐8 (DB24C8) macroring bound to a “finger” molecule possessing two different recognition sites has been studied at the density functional theory (DFT) and Møller‐Plesset second‐order (MP2) levels of theory. The calculation confirmed experimental results that translational conformer with DB24C8 located around NH station has the lowest energy, while the conformer with DB24C8 located around NH station shows the highest energy. It has been found that Bpym2+ unit consists of two “substations” separated by an energy barrier of 3–17 kcal/mol depending on the state of the NH–NH station. The translational conformers are stabilized by NH…O, ⁺NH…O, ⁺NCH…OH‐bonds, and π–π stacking with different contributions, depending on the conformer type. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem 2007     

Frontside versus Backside SN2 Substitution at Group 14 Atoms: Origin of Reaction Barriers and Reasons for Their Absence

We have theoretically studied the gas‐phase nucleophilic substitution at group‐14 atoms (S_N2@A) in the model reactions of Cl^?+AH₃Cl (A=C, Si, Ge, Sn, and Pb) using relativistic density functional theory (DFT) at ZORA‐OLYP/TZ2P. Firstly, we wish to explore and understand how the reaction coordinate ζ, and potential energy surfaces (PES) along ζ, vary as the center of nucleophilic attack changes from carbon to the heavier group‐14 atoms. Secondly, a comparison between the more common backside reaction (S_N2‐b) and the frontside pathway (S_N2‐f) is performed. The S_N2‐b reaction is found to have a central barrier for A=C, but none for the other group‐14 atoms, A=Si–Pb. Relativistic effects destabilize reactant complexes and transition species by up to 10 kcal mol^?1 (for S_N2‐f@Pb), but they do not change relative heights of barriers. We also address the nature of the transformation in the frontside S_N2‐f reactions in terms of turnstile rotation versus Berry‐pseudorotation mechanism.     

Substituent effects on SN2 reaction between substituted benzyl chloride and chloride ion in gas phase

Nucleophilic substitution reaction between some substituted benzyl chlorides and chloride ion has been investigated by ab initio and DFT methods. New calculated energy data are in better agreement with experimental data. The electron‐withdrawing groups increase the energy barriers and the electron‐donating groups decrease them. The changes of geometrical parameters and energy data are in good agreement with the results of atoms in molecules and natural bond orbital analyses. The relationship between Hammett coefficients and energy data (and geometry parameters) has been established and the ρ constant has been calculated for this reaction. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011