Isomerism in some 1-oxa-3,5-dithians and the X-ray structure determination of 2,6-bis(trichloromethyl)-4-dichloromethylene-1-oxa-3,5-dithian

2,6-bis (trichloromethyl)-4-dichloromethylene-1-oxa-3,5-dithian is triclinic,P¯1,a=10.125(3),b=10.294(3),c=14.631(10) Å,=92.84(5),=96.51(5), =96.18(2)°,V=1503 ų,Z=4. The structure was solved by direct methods, from data collected at room temperature on an Enraf-Nonius CAD4 diffractometer, and refined by least squares to a finalR value of 0.035 using 3961 reflections. The conformation of the molecules is twist-boat, one molecule being almost symmetrically twisted about the O-C(Cl₂) direction. The range of endocyclic O-C-S angles is 111.8(3) to 115.1(3)° and data are given which support the possibility of there being a correlation between the endocyclic O-C(X)-S angle, the C-O-C(X)-C(Cl₃) torsion angle, and the C-S-C(X)-C(Cl₃) torsion angle. The -CCl₃ groups are in pseudoequatorial positions. Average bond lengths (Å) for the two molecules are C-O 1.405, C(sp ³)-S 1.822, C(sp ²)-S 1.759, C-C_eq 1.529 and average endocyclic angles (°) are O 117.3, C (sp ³) 113.5, S 97.4, C(sp ²) 119.3, the esds on the individual bond lengths and angles being in the ranges of 0.003–0.004 Å and 0.2–0.4° respectively.     

Crystal and molecular structure of (2-amino-4-methyl-1-pyridinio) cyanoborane

The crystal structure of the title compound, C₇H₁₀N₃B, has been determined by X-ray diffraction using CuK radiation. The crystals are monoclinic,P2₁/c witha=6.941(2),b=15.961(3),c=7.739(2) Å,=90.5(2)° andZ=4. The structure was solved by direct methods, and refined by full matrix least squares to a finalR-value of 056 with 833 observed reflections. The molecule is in the elongated form, but is not planar; the torsion angle C(2)-N(1)-B-C(8) is 82.9(4)°. The bond distances N(1)-B=1.587(5) Å; B-C(8)=1.586(6) Å; C(8)N(3)=1.134(5) Å. The B-C-N moiety is slightly [176.9(4)°] nonlinear. The molecules are linked by weak hydrogen bonds N(2)-H(1N)N(3), N(2)-N(3)=3.055(5) Å and N(2)-H(2N)N(3), N(2)-N(3)=3.165 Å.     

Crystal and molecular structure of tetrakis-(phenylenethiourea)tellurium(II) perchlorate hexahydrate,C28H24N8O8S4Cl2Te·6H2O

The synthesis and structural characterization of the title compound, C₂₈H₂₄N₈O₈S₄Cl₂Te·6H₂O are reported. The crystals are triclinic, space group P¯1 (No. 2), withZ=1 in a unit cell of dimensionsa=10.312(7),b=7.144(6),c=14.256(7) Å,=83.04(5),=92.15(5), and=101.25(6)°,V _c =1022 ų. The structure was solved by Fourier methods, and refined by full-matrix least squares toR=0.073 andR _w =0.077 for 1305 unique reflections. The tellurium atom in the molecule lies at a crystallographic center of symmetry, and is bonded to four phenylenethiourea sulfur atoms in a near square-planar arrangement with Te-S(1)=2.666(5), Te-S(2)=2.675(6) Å, and S(1)-Te-S(2)=88.7(3)°. The ligands behave as thiones. The crystal packing is stabilized by the extensive hydrogen bonding involving oxygen and nitrogen atoms. The Cl-O bond lengths are 1.29-1.36 Å and the O-Cl-O angles are 90–130° in the ClO₄ ^– moiety, and differ considerably from the normal values of 1.44 Å and 109°, respectively.     

Crystal and molecular structure of bis(tetrathiafulvalene) bis(maleonitrile-1,2-dithiolato)nickelate(II)

The crystal and molecular structure of the title compound, C₂₀H₈N₄S₁₂Ni, is reported. Crystals are triclinic, space groupP¯1 (No. 2) withz=1 in a cell of dimensionsa=8;482(2),b=7.950(2),c=9.976(2) Å,=95.64(2),=98.60(2), and =87.65(2)°. The structure was solved by Fourier methods and refined by the method of least squares toR=0.033 for 2027 unique reflections. The Ni atom has an approximate square-planar configuration with Ni-S(1)=2.179(1), Ni-S(2)=2.175(1) Å, and the S(1)-Ni-S(2) bite angle of 91.89(4)°. The anions and the cations form a mixed stack (DAD-DAD-) along the diagonal of theab plane, showing the possibility of unusual electrical behavior.     

Complexation with diol host compounds. Part 3. Molecular inclusion of 4-methylcyclohexanone and 2-methylcyclohexanone by the host,trans-9,10-dihydroxy-9,10-diphenyl-9,10-dihydroanthracene

The structures of the 12 molecular complexes oftrans-9,10-dihydroxy-9,10-diphenyl-9,10-dihydroanthracene with 4-methylcyclohexanone (1) and with 2-methylcyclohexanone (2) have been determined by X-ray crystallography. The crystal data are as follows: Compound (1):P2₂/c,a=8.838(2) Å,b=8.92(1) Å,c=20.879(8)=Å,=98.67(2)°,V=1627(2) ų,Z=2 andR=0.062 for 2201 unique MoK reflections; Compound (2):P¯1,a=8.917(3) Å,b=9.900(2) Å,c=11.250(4) Å,a=68.72(2)°,=64.39(3)°, =74.86(2)°,V=828.1(5) ų,Z=1 andR=0.098 for 2563 unique reflections. Both inclusion compounds exhibit O-HO=C hydrogen bonding interactions. The thermal properties of these compounds have been characterized by DTA and TGA thermograms.     

Crystal and molecular structure of bis(o-phenylenethiourea)selenium(II)chloride dihydrate,C14H12N4S2Cl2Se·2H2O

The synthesis and crystal structure ofbis(o-phenylenethiourea)selenium(II)-chloride dihydrate, Se(C₇H₆N₂S)₂Cl₂·2H₂O are reported. The compound crystallizes in the monoclinic space group, P2₁/n, with four molecules per unit cell, the dimensions of which area=10.243(3),b=13.341(4),c=14.273(4) Å,=93.00(3)°,U=1947.76 ų. The structure was solved by direct methods and refined by full-matrix least-squares toR=0.039 andR _w =0.040 for 3314 unique reflections. Selenium displays two strong coordinations arising from the two sulfurs, Se-S(1)=2.191(1), Se-S(2)=2.206(1) Å, and S(1)-Se-S(2)=101.0(1)°, and four secondary interactions involving three chlorines and one sulfur. The complex occurs as a dimer with two sets of very weakly interacting bridging pairs S(2), S(2)^a; and Cl(2), Cl(2)^a, where a denotes the inversion related atom. Lattice stabilization is ensured by the extensive network of hydrogen bonds involving chlorines, water oxygens, and nitrogens of phenylenethiourea ligands.     

Molecular structures of [CpRu(PPh3)(dtoxa-H2O)]BF4 and {[CpRu(PPh3)2]2(μ-dtoxa)}(BF4)2, dtoxa=dithiooxamide

The reaction of [CpRu(PPh₃)₂(n-C₃H₇SH)]BF₄ with dithiooxamide (dtoxa) gave two products: {[CpRu(PPh₃)₂]₂(-dtoxa)} (BF₄)₂,1, and [CpRu(PPh₃)(dtoxa-H₂O)]BF₄,2. The structures of both complexes were determined by X-ray diffraction techniques. Compound1 crystallized in the triclinic space groupP _¯1,a=12.822(4),b=14.16(1),c=23.631(8) Å,=84.57(4),=83.64(3), =83.57(4)°,Z=2,R=0.069,R _w =0.084. The structure of1 shows two CpRu(PPh₃)₂ ⁺ units bridged through the S atoms of the dtoxa ligand. Ru-S distances are 2.377(6)Å for Ru1-S1 and 2.368(6) Å for Ru2-S2. Compound2 crystallized in the monoclinic space groupP2₁/c,a=13.446(3),b=13.461(7),c=31.214(7) Å,=100.78(3)°,Z=8,R=0.054,R _w =0.055. The structure of2 has two molecules in the asymmetric unit. The Ru is chelated to the dtoxa through the S atoms: Ru1-S1, 2.307(4); Ru1-S2, 2.300(4); Ru2-S3, 2.295(4); Ru2-S4, 2.287(4) Å. The coordination sphere of the Ru in2 is completed by a cyclopentadienyl ligand and a triphenylphosphine.     

Crystal and molecular structure of 3-dimethylaminobenzoic acid

The title compound C₉H₁₁NO₂ is triclinic, space group P¯1, with the cell dimensionsa=7.022(1),b=7.476(2),c=8.957 (1) Å,=87.02(2),=110.88(1),=99.10(1)°,V=433.8(4) ų,Z=2,M _r =165.2,Do=1.27,Dx=1.26 mg/m³,F(000)=176,T=293 K,R=0.057 for 939 observed reflections. The molecules are packed as centrosymmetric hydrogen bonded dimers with an O-HO distance of 2.626(3) Å. The COOH group is rotated by 1.7(1)° about the exocyclic C(1)-C(7) bond out of the benzene ring plane. The molecules lie on (0 2-1) plane for which thed value is found to be 3.378 Å which is very close to the mean separation between the parallel packed benezene rings [3.347(4) Å]. The entire molecule is planar except for the two methyl groups attached to the nitrogen atom. The N atom is free from any binding of either type C-HN or O-HN.N. C. L. Communication No. 4699.     

Crystal and molecular structure of isovoacangine: An alkaloid from Stemmadenia Donnell-Smithii

C₂₂H₂₈N₂O₃ is monoclinic,P2₁. Unit-cell dimensions at 293 K area=10.023(5),b=6.615(3),c=14.749(6) Å,=91.41(4)°,V=978(1) ų,D _c =1.25 g cm^–3, andZ=2. The structure has been determined from single-crystal data collected with a four-circle diffractometer and refined from 1421 reflections toR=0.057. The structural features determined from chemical and spectroscopic studies are confirmed and extended. The stereochemistry at C(4) and C(18) is 4S and 18S. The indole ring is not planar and the seven-membered nitrogen-containing ring adopts a distorted-chair conformation. The angle between the normals to the planes of the indole and sevenmembered rings is 15.2(1)°, while the C(5)-N(6)-C(19)-C(2) atoms of the central axis of the iso-quinuclidine tricyclic structure is 69.1(1)°. The molecules in the crystal are held together by a hydrogen bond, a C-HO contact, and van der Waals interactions.     

Crystal structure of 751-1751-1751-1751-2751-2751-2

The title compound crystallizes in the centrosymmetric triclinic space group (No. 2) witha=10.818(1)Å,b=10.876(1)Å,c=11.072(2)Å, =98.74(1)°, =98.83(1)°, =96.61(1)°,V=125906(3)ų andZ=2. Interatomic distances include Fe–P=2.243(2)Å, Fe–CO=1.771(6)–1.781(5)Å, Fe–C(C₅H₅)=2.074(6)–2.103(5)Å and P–F=1.511(6)–1.571(4)Å.     

Structural characterization of the edge double-bridged triruthenium cluster complex Ru3(μ-Cl)2(CO)8(PPh3)2

The title compound is Ru₃(-Cl)₂(CO)₈(PPh₃)2. Crystal data: formula C₄₄H₃₀O₈Cl2P2Ru₃;f _w =1122.9; monoclinic,P2₁; cell parameters (at 293 K)a=10.971(2) Å,b=17.066(2) Å,c=11.833(2) Å,=92.91(1)°,V=2213 ų,Z=2, _calcd=1.68, _meas=1.68. Final discrepancy indices areR(F)=0.030,R _W (F)=0.036. The structure consists of an open trinuclear unit involving two metal-metal bonds [Ru(1)-Ru(2)=2.845(1) Å, Ru(2)-Ru(3)=2.860(1) Å]. The open edge of the metal framework [Ru(1)Ru(3)=3.254(1) Å] is supported by two symmetric bridging chloride ligands [Cl(1)-Ru(1)=2.461(2) Å; Cl(1)-Ru(3)=2.464(2) Å; Cl(2)-Ru(1)=2.470(2) Å; Cl(2)-Ru(3)=2.472(2) Å]. Both phosphorus ligands are cis to the Cl atoms and trans to the unique ruthenium atom Ru(2). Geometric features of the edge dibridged complex are discussed.     

The structure of (1,2:5, 6η-cyclononatetraene) (η-cyclopentadienyl)cobalt,CoC14H15

The title compound crystallizes in the monoclinic space groupP2₁/a,a=11.50(2),b=7.724(1),c=12.599(3) Å,=102.22(5)°,Z=4. The structure was solved by direct methods and refined by full-matrix least squares toR=0.049 for 1032 observed reflections. The cobalt atom is -bonded to the cyclopentadienyl ring, with a mean Co-C distance of 2.07(1) Å, and also -bonded to the cyclonoatetraene ring at C(2)-C(3) and at C(6)-C(7), with a mean Co-C distance of 2.00(1) Å.     

Crystal and molecular structure of 0,0,0-propan-1,2,3-trithionobenzoate (3TBZ): Implication for thermally induced solid-state transformation of 3TBZ

The crystal and molecular structure of 0,0,0-propan-1,2,3-trithiobenzoate (3TBZ) has been determined by direct methods. Crystals are monoclinic,a=6.810(2),b=35.950(2),c=9.415(2) Å,=94.78(2)°, space group P2₁/c,Z=4. The structure was refined using full-matrix least-squares toR=0.078,R _w=0.064, 1957 reflections CuK radiation, =1.5418 Å. The molecule has one relatively short S---C (methylene) intramolecular distance, S(2)---C(38)=3.440(4)Å, approximately 1.5 Å less than the shortest S---C distance observed in related crystal structures. An hypothesis related to this short contact is proposed in order to account for the unusual pyrolitic behavior of this compound in the solid state.     

Structure of 11α-hydroxy-progesterone,C21H30O3

The structure of the title compound, C₂₁H₃₀O₃, was determined by X-rays.M _r =330.5, orthorhombic,P2₁2₁2₁,a=8.4451(9),b=10.7074(8),c=20.1525(40) Å,V=1822(8) ų,Z=4,D _x =1.205 mg m^–3. CuK radiation (1.54184 Å),(CuK)=5.85 cm^–1,F(000)=720. FinalR=0.054R _w =0.049 for 1774 unique reflections. The structure was solved usingMultan. TheA ring adopts an intermediate sofa-half-chair conformation and is bent toward the face of the steroid skeleton. RingsB andC have typical chair conformations, and theD ring has a slightly distorted half-chair conformation. The progesterone side chain has a typical conformation, and the C16-C17-C20-O20 torsion angle is –17.9°. An intermolecular hydrogen bond is formed between the hydroxyl group and the progesterone side chain.     

Structure of 2-(2′-bromo-5′-nitrostyryl)benzothiazole

The title compound C₁₅H₉BrN₂O₂S (brnsb) is monoclinic, witha=7.730(2),b=26.847(5),c=7.773(2) Å,=117.48(1)°,V=1431(1) ų,Z=4,D _x=1.677,(MoK)=29.9 cm^–1,F(000)=720,T=298K in space groupP2₁/c. The structure was solved by heavy atom and Fourier methods and refined toR=0.034 for 1776 unique observed reflections. The molecule is nearly planar, with a dihedral angle of only 3.8(1.1)° between the benzothiazole and phenyl rings. The C-S-C angle in the thiazole ring is 89.0°, while the C-N-C angle in that ring is 111.5(3)°.     

Structure of 3α,12β-dihydroxy-2β-morpholino-5α-pregnan-20-one,C25H41O4N

The crystal and molecular structure of 3,12-dihydroxy-2-morpholino-5-pregnan-20-one, C₂₅H₄₁O₄N, has been determined:M _r =419.6,P2₁,a=13.5778(8),b=14.4340(8),c=5.8943(5) Å,=94.32(1)°,V _c =1151.9(3) ų,Z=2,D _x =1.21 g cm^–3, (CuK) = 1.5418 Å, =5.6 cm^–1,F(000)=460,R=0.039,R _w =0.040 for 2421 unique observed reflections. All six-membered rings have chair conformations, and theD ring has a 13-envelope conformation. The progesterone side chain has an unusual conformation, and the C16-C17-C20-O20 torsion angle, which defines the conformation, is –152.6(3)°. The unusual conformation seems to be forced by the intramolecular hydrogen bond between the hydroxyl group at C12 and the O20 atom from the side-chain.     

Crystal and molecular structure of dibromobis(benzimidazole)copper(II)

The reaction of CuBr₂ with benzimidazole and HBr in aqueous solution leads to the formation of Cu(C₇H₆N₂)₂Br₂ as dark-brown, stable monoclinic crystals. Space groupP2₁/c witha=13.794(5),b=7.875(2),c=14.510(6) Å;=105.82(5)°;V _c =1516(5) ų;D _x =2.010(3) Mg m^–3. The structure was refined by a full-matrix least-squares procedure to giveR=R _w =0.045 for 1932 intensities above 3(I). The copper (II) ions are four coordinates in the form of a distorted flattened tetrahedron CuN₂Br₂, with the bond lengths Cu-Br(1)=2.402(1), Cu-Br(2)=2.446(1), Cu-N(1)=1.976(7), and Cu-N(11)=1.946(7) Å. The flattened angles are Br-Cu-Br=139.0(1) and N-Cu-N=154.6(3)°. The geometry of intermolecular and intramolecular hydrogen bonds is discussed.     

Crystal and molecular structure of methylene bis(piperidine-dithiocarbamate), C13H22N2S4

Reaction of anhydrous sodium piperidine dithiocarbamate with methylene chloride yields methylene bis(piperidine dithiocarbamate). The crystals, C₁₃H₂₂N₂S₄ (M=334.57), are monoclinic with space group ,a=6.421(3),b=29.321(7),c=9.022(4)Å,=109.05(3)°,V=1605.6 ų,Z=4,D _c =1.384 g cm^–3,F(000)=712,T=295°K (Mo-K)=0.71069 Å,=5.62 cm^–1 andR=0.032 for 1734 reflections. The molecular structure shows that the methylenic group is bonded to two planar moieties at distances of 1.782(3) and 1.803(3)Å with an S-CH₂-S angle of 114.7(2)°. The configuration about each N atom is planar rather than pyramidal. The two C-N bond lengths adjacent to the C=S bonds are both very short 1.330(4) and 1.336(4) Å indicating the influence of the C=S bond on C-N bond lengths. The six-membered piperidine ring has a classical chair conformation with average C-C distance of 1.511 (5)Å.     

Conformation and packing differences between two anomeric xylofuranosyl uracil nucleosides: Crystal structure of α-C14N2O7H18 monohydrate

5-Acetyl-1-(3,5-O-isopropylidene--D-xylofuranosyl) uracil monohydrate (-AXU·H₂O) crystallizes in an orthorhombic cell of dimensionsa=7.286(6),b 14.281(10),c=15.852(11) Å. Its structure has been determined by direct methods from single-crystal CuK X-ray data and refined to a conventionalR factor of 0.055 over 1708 unique reflections. The furanose ring has conformation C2'endo-C3'endo (rather than the uncommon C3'endo-C4'exo as in -AXU) and the glycosidic torsion angle is –31° (17° in -AXU). The oxygen of the water molecule in -AXU·H₂O accepts a hydrogen bond (O 10...O 5=2.70 Å) from the sugar hydroxyl O5 and the hydrogens form hydrogen bonds to a uracil carbonyl (O 10...O 2=2.78 Å) and an isopropylidene oxygen atom (O 10...O 7=2.90 Å).     

Crystal structures of two allotropic forms of Na2CoP2O7

Na₂CoP₂O₇ may be prepared in two allotropie forms:I, rose,M _r =278.85, triclinic, P1,a=9.735(2),b=10.940(3),c=12.289(4) Å,=148.78,=121.76(1), =68.38(2)°,V=566.8(2) ų,Z=4,D _meas=3.28(5) g cm^–3,D _calc=3.267 g cm^–3, (MoK)=0.71069 Å,=37.12 cm^–1, F(000)=540,T=298 K,R=5.4% for 2911 observed reflections; andII, blue,M _r =278.85, orthorhombic, P2₁cn,a=7.713(2) Å,b=10.271(4),c=15.378(6)°,V=1218.2(8) ų,Z=8,D _meas=3.06(5) g cm^–3,D _calc=3.040 g cm^–1, (MoK ) Å,=34.55 cm^–1, F(000)=1080,T=298 K,R=9.9% for 1450 observed reflections. Cobalt displays octahedral coordination to six oxygen atoms in the rose form whereas the metal coordination is tetrahedral in the blue form.