Simulating the photoelectron spectra of rare-gas clusters

Motivated by the recent experiments of the Swedish group [M. Tchaplyguine, R. R. Marinho, M. Gisselbrecht et al., J. Chem. Phys. 120, 345 (2004)], we simulate the photoelectron spectra of pure xenon and argon clusters. The clusters are modeled using molecular dynamics with Hartree-Fock-dispersion type pair potentials while the spectrum is calculated as the sum of final state energy shifts of the atoms ionized within the cluster relative to the isolated gas phase ion. A self-consistent polarization formalism is used. Since signal electrons must travel through the cluster to reach the detector, we have accounted for the attenuation of the signal intensity by integrating an exponentially decaying scattering expression over the geometry of the cluster. Several different approaches to determining the required electron mean free paths (as a function of electron kinetic energy) are considered. Our simulated spectra are compared to the experimental results.     

An octanuclear complex containing the [Fe3O]7+ metal core: structural, magnetic, Mössbauer, and electron paramagnetic resonance studies

A new asymmetrically coordinated bis-trinuclear iron(III) cluster containing a [Fe(3)O](7+) core has been synthesized and structurally, magnetically, and spectroscopically characterized. [Fe(6)Na(2)O(2)(O(2)CPh)(10)(pic)(4)(EtOH)(4)(H(2)O)(2)](ClO(4))(2).2EpsilontOH (1.2EpsilontOH) crystallizes in the P space group and consists of two symmetry-related {Fe(3)O](7+) subunits linked by two Na(+) cations. Inside each [Fe(3)O](7+) subunit, the iron(III) ions are antiferromagnetically coupled, and their magnetic exchange is best described by an isosceles triangle model with two equal (J) and one different (J ') coupling constants. On the basis of the H = -2SigmaJ(ij)S(i)S(j) spin Hamiltonian formalism, the two best fits to the data yield solutions J = -27.4 cm(-1), J ' = -20.9 cm(-1) and J = -22.7 cm(-1), J ' = -31.6 cm(-1). The ground state of the cluster is S = (1)/(2). X-band electron paramagnetic resonance (EPR) spectroscopy at liquid-helium temperature reveals a signal comprising a sharp peak at g approximately 2 and a broad tail at higher magnetic fields consistent with the S = (1)/(2) character of the ground state. Variable-temperature zero-field and magnetically perturbed M?ssbauer spectra at liquid-helium temperatures are consistent with three antiferromagnetically coupled high-spin ferric ions in agreement with the magnetic susceptibility and EPR results. The EPR and M?ssbauer spectra are interpreted by assuming the presence of an antisymmetric exchange interaction with |d| approximately 2-4 cm(-1) and a distribution of exchange constants J(ij).     

First-principles study of the rotational transitions of H2 physisorbed over benzene

In the ongoing search for promising compounds for hydrogen storage, novel porous metal-organic frameworks (MOFs) have been discovered recently [M. Eddadoudi, J. Kim, N. L. Rosi, D. Vodak, J. Wachter, M. O'Keeffe, and O. M. Yaghi, Science 295, 469 (2002); N. L. Rosi, J. Eckert, M. Eddadoudi, D. Vodak, J. Kim, M. O'Keeffe, and O. M. Yaghi, Science 300, 1127 (2003)]. Binding sites in these MOFs were deduced from inelastic neutron scattering (INS) spectroscopy of the rotational transitions of the adsorbed molecular hydrogen. In light of this discovery, it is important to have a fundamental understanding of hydrogen adsorption at different sites in this class of MOF materials. As a first step, here we study the case of H(2) adsorbed on benzene as a model of the organic linkers in the microporous crystal. We access the density functional theory results by comparing with correlated ab initio methods, e.g., second-order M?ller-Plesset and coupled cluster with noniterative triple excitations. Different approximations for the exchange-correlation potentials were accessed for a set of relevant properties (binding energy, energetically favored configuration, and distance between the adsorbents and adsorbates). In particular, theoretical rotational spectra of the adsorbed H(2) were obtained that could be compared to the experimental INS spectra.     

链状三核异金属簇阴离子［Cl_2FeS_2M＇（PPh_3）_2］~－（M＝Mo

在５５０～９０ｃｍ~（－１）波数范围内，测量簇阴离子［Ｃｌ_２ＦｅＳ_２ＭＳ_２Ｍ′（ＰＰｈ_３）_２］~－（Ｍ＝Ｍｏ，Ｍ′＝Ａｇ；Ｍ＝Ｗ，Ｍ′＝Ｃｕ，Ａｇ）的付里叶变换红外光谱，并对标题簇阴离子［Ｃｌ_２ＦｅＳ_２ＷＳ_２Ｃｕ（ＰＰｈ_３）_２］~－，［Ｃｌ_２ＦｅＳ_２ＭｏＳ_２Ａｇ（ＰＰｈ_３）_２］~－和［Ｃｌ_２ＦｅＳ_２ＷＳ_２Ａｇ（ＰＰｈ_３）_２］~－骨架的振动光谱给予经验指认。同时采用＂诱导自洽方法计算振动力常数＂程序，对簇骨架［Ｃｌ_２ＦｅＳ_２ＭＳ_２Ｍ~′Ｐ_２］进行简正坐标分析。振动频率的计算值与观测值符合良好，两者平均偏差小于１．０％，计算结果支持了振动谱带的归属并表明计算力常数的合理性。文中还讨论了主要价键振动频率的变化规律。     

Mass selective gas phase study of ClO, OClO, ClOO and ClAr by anion-ZEKE-photoelectron spectroscopy

Anion-ZEKE-photoelectron spectra of ClO-, OClO-, ClOO- and the van der Waals cluster ArCl- have been measured. Refined or new values for the electron affinity of ClO, OClO and ClOO have been found. The peak positions in these spectra are in very good agreement with former ClO- and OClO- anion-photoelectron spectra (K. M. Gilles, M. L. Polak and W. C. Lineberger, J. Chem. Phys., 1992, 96, 8012) and a recent ArCl- anion-ZEKE spectrum (T. Lenzer, I. Yourshaw, M. Furlanetto, G. Reiser and D. Neumark, J. Chem. Phys., 1992, 110, 9578). The higher resolution of our anion-ZEKE-photoelectron spectrum of OClO- led to a refined assignment of the corresponding anion-photoelectron spectrum. In addition, a strong difference in the relative intensities of the vibrational peaks has been found in the anion-ZEKE-spectrum of OClO- in comparison with the anion-photoelectron spectrum. For the first time, mass selective spectroscopic information has been obtained for ClOO. The strong similarity to the ArCl- spectrum indicates a weakly bound van der Waals cluster Cl.O2. Binding energies of the anion, neutral ground and neutral excited state could be deduced. These are in good agreement with the electron affinities of Cl and ClOO, but differ from theoretical values (K. A. Peterson and H. J. Werner, J. Chem. Phys., 1992, 96, 8948) by a factor of 4.5 and from thermochemically determined values (J. M. Nicovich, K. D. Kreutter, C. J. Shackelford and P. H. Wine, Chem. Phys. Lett., 1991, 179, 367 and S. Baer, H. Hippler, R. Rahn, M. Siefke, N. Seitzinger and J. Troe, J. Chem. Phys., 1991, 95, 6463) by a factor of 9.     

A missing high-spin molecule in the family of cyanido-bridged heptanuclear heterometal complexes, [(LCu(II))₆Fe(III)(CN)₆]3+, and its Co(III) and Cr(III) analogues, accompanied in the crystal by a novel octameric water cluster

Three isostructural cyanido-bridged heptanuclear complexes, [{Cu(II)(saldmen)(H?O)}?{M(III)(CN)?}]-(ClO?)?·8H?O (M= Fe(III) 2; Co(III), 3; Cr(III) 4), have been obtained by reacting the dinuclear copper(II) complex, [Cu?(saldmen)?(μ-H?O)(H?O)?](ClO?)?·2H?O 1, with K?[Co(CN)?], K?[Fe(CN)?], and K?[Cr(CN)?], respectively (Hsaldmen is the Schiff base resulting from the condensation of salicylaldehyde with N,N-dimethylethylenediamine). A unique octameric water cluster, with bicyclo[2,2,2]octane-like structure, is sandwiched between the heptanuclear cations in 2, 3 and 4. The cryomagnetic investigations of compounds 2 and 4 reveal ferromagnetic couplings of the central Fe(III) or Cr(III) ions with the Cu(II) ions (J(CuFe) = +0.87 cm?1, J(CuCr) = +30.4 cm?1). The intramolecular Cu···Cu exchange interaction in 3, across the diamagnetic cobalt(III) ion, is -0.3 cm?1. The solid-state 1H-NMR spectra of compounds 2 and 3 have been investigated.     

Plasmon profiles and shapes of sodium cluster ions

Photo-absorption cross-sections for charged sodium clusters (14 to 48 atoms) have been measured for photon energies from 2.0 eV to 3.5 eV. The spectra are dominated by surface plasma oscillations of the valence electrons exhausting 70–100% of the dipole sum rule. The mean resonance energy of ?2.75 eV is nearly independent of cluster size. A splitting of the resonance peaks is observed for non-“magic” clusters and discussed in terms of a deformation picture involving prolate and oblate shapes.     

Gold cluster carbonyls: saturated adsorption of CO on gold cluster cations, vibrational spectroscopy, and implications for their structures

We report on the interaction of carbon monoxide with cationic gold clusters in the gas phase. Successive adsorption of CO molecules on the Au(n)(+) clusters proceeds until a cluster size specific saturation coverage is reached. Structural information for the bare gold clusters is obtained by comparing the saturation stoichiometry with the number of available equivalent sites presented by candidate structures of Au(n)(+). Our findings are in agreement with the planar structures of the Au(n)(+) cluster cations with n < or = 7 that are suggested by ion mobility experiments [Gilb, S.; Weis, P.; Furche, F.; Ahlrichs, R.; Kappes, M. M. J. Chem. Phys. 2001, 116, 4094]. By inference we also establish the structure of the saturated Au(n)(CO)(m)(+) complexes. In certain cases we find evidence suggesting that successive adsorption of CO can distort the metal cluster framework. In addition, the vibrational spectra of the Au(n)(CO)(m)(+) complexes in both the CO stretching region and in the region of the Au-C stretch and the Au-C-O bend are measured using infrared photodepletion spectroscopy. The spectra further aid in the structure determination of Au(n)(+), provide information on the structure of the Au(n)(+)-CO complexes, and can be compared with spectra of CO adsorbates on deposited clusters or surfaces.     

Density functional studies of oxidized and reduced methane monooxygenase. Optimized geometries and exchange coupling of active site clusters

The conflicting protein crystallography data for the oxidized form (MMOH(ox)) of methane monooxygenase present a dilemma regarding the identity of the solvent-derived bridging ligands within the active site: do they comprise a diiron unit bridged by 1H2O and 1OH(-) as postulated for Methylococcus capsulatus or 2OH(-) ligands as suggested for Methylosinus trichosporium? Using models derived explicitly from the M. capsulatus and M. trichosporium protein data, spin-unrestricted density functional methods have been used to study two structurally characterized forms of the hydroxylase component of methane monooxygenase. The active site geometries of the oxidized (MMOH(ox)) and two-electron-reduced (MMOH(red)) states have been geometry optimized using several quantum cluster models which take into account the antiferromagnetic (AF) and ferromagnetic (F) coupling of electron spins. Trends in cluster geometries, energetics, and Heisenberg J values have been evaluated. For the majority of models, calculated geometries are in good agreement with the X-ray analyses and appear relatively insensitive to the F or AF alignment of electron spins on adjacent Fe sites. Discrepancies between calculation and experiment appear in the orientation of the coordinated His and Glu amino acid side chains for both MMOH(ox) and MMOH(red) and also in unexpected intramolecular proton transfer in the MMOH(ox) cluster models. There is additional dispersion between (and among) calculated and experimental Fe(3+)-OH(-) distances with relevance to the correct protonation state of the solvent-derived ligands. In an accompanying paper (Lovell, T.; Li, J.; Noodleman, L. Inorg. Chem. 2001, 40, 5267), a comparison of the related energetics of the active site models examined herein is further evaluated in the full protein and solvent environment.     

TPEPICO studies near ionization threshold of argon and krypton clusters

Single photon ionization of argon and krypton clusters has been studied in the region between threshold and the ionization potential of the corresponding atom. Synchrotron radiation from the electron storage ring BESSY is used to ionize the clusters; threshold-photo-electron-photoion-coincidence (TPEPICO)-time-of-flight technique is used to detect ions correlated with the emission of zero-kinetic-energy-electrons. The spectra of the clusters in the range ofn=2 to 15 are discussed in view of the extensive fragmentation taking place in these systems. In order to characterize the properties of the clusters a method using scaling laws is applied. The principles and the deduction of Hagena's scaling parameter Γ* are briefly reviewed. Using Γ* an experimentally derived mean cluster size for molecular beams can be assigned. This allows one to clearly demonstrate the systematic variations of the measured spectra due to cluster fragmentation. As a general feature it is observed that, in the range studied, the peak in the measured ionization rate for a cluster ion (fragment) of a given size shifts to higher photon energies as the mean cluster size is increased.     

Competition between cation-pi interactions and intermolecular hydrogen bonds in alkali metal ion-phenol clusters. I. Phenol dimer

The competition between ion-molecule and molecule-molecule interactions was investigated in M+(phenol)2 cluster ions for M=Li, Na, K, and Cs. Infrared predissociation spectroscopy in the O-H stretch region was used to characterize the structure of the cluster ions. By adjusting the experimental conditions, it was possible to generate species where argon was additionally bound in order to investigate cold cluster ions. The spectra showed the presence of hydrogen bonding in the colder M+(phenol)2Ar cluster ions but the absence of hydrogen bonding in the warmer M+(phenol)2 species. For the cold species, the IR spectra were compared with minimum-energy ab initio calculations to elucidate the hydrogen-bonded structures. In the dominant hydrogen-bonded configurations observed experimentally, the phenol molecules form hydrogen-bonded dimers and the alkali-metal ions bind to the phenol via a cation-pi interaction with the aromatic ring. Increasing the strength of the cation-pi interaction by decreasing the ion size forces the distance between the phenol O-H groups to increase, thus weakening the intermolecular hydrogen bond. Free-energy differences of different configurations relative to the ground state demonstrate that hydrogen-bonded structures are enthalpically favored, while non-hydrogen-bonded structures are entropically favored and are thus observed in the warm cluster ions.     

Electronic structures of size-selected single-layered platinum clusters on silicon(111)-7x7 surface at a single cluster level by tunneling spectroscopy

Tunneling spectra of size-selected single-layered platinum clusters (size range of 5-40) deposited on a silicon(111)-7x7 surface were measured individually at a temperature of 77 K by means of a scanning tunneling microscope (STM), and the local electronic densities of states of individual clusters were derived from their tunneling spectra measured by placing an STM tip on the clusters. In a bias-voltage (V(s)) range from -3 to 3 V, each tunneling spectrum exhibits several peaks assignable to electronic states associated with 5d states of a constituent platinum atom and an energy gap of 0.1-0.6 eV in the vicinity of V(s)=0. Even when platinum cluster ions having the same size were deposited on the silicon(111)-7x7 surface, the tunneling spectra and the energy gaps of the deposited clusters are not all the same but can be classified in shape into several different groups; this finding is consistent with the observation of the geometrical structures of platinum clusters on the silicon(111)-7x7 surface. The mean energy gap of approximately 0.4 eV drops to approximately 0.25 eV at the size of 20 and then decreases gradually as the size increases, consistent with our previous finding that the cluster diameter remains unchanged, but the number density of Pt atoms increases below the size of 20 while the diameter increases, but the density does not change above it. It is concluded that the mean energy gap tends to decrease gradually with the mean cluster diameter. The dependence of the mean energy gap on the mean Pt-Pt distance shows that the mean energy gap decreases sharply when the mean Pt-Pt distance exceeds that of a platinum metal (0.28 nm).     

Cooperativity in Molecular Dynamics Structural Models and the Dielectric Spectra of 1,2-Ethanediol

Linear relationships are established between the experimental equilibrium correlation factor and the molecular dynamics (MD) mean 〈cos ?〉 value of the О–Н···О bond angle and the longitudinal component of the unit vector of the mean statistical dipole moment of the cluster in liquid 1,2-ethanediol (12ED). The achievements of modern MD models in describing the experimental dispersion of the permittivity of 12ED by both continuous and discrete relaxation time spectra are analyzed. The advantage computer MD experiments have over dielectric spectroscopy for calculating relaxation time and determining the molecular diffusion mechanisms of the rearrangement of the network 12ED structure, which is more complex than water, is demonstrated.     

The orbital-specific-virtual local coupled cluster singles and doubles method

We extend the orbital-specific-virtual tensor factorization, introduced for local M?ller-Plesset perturbation theory in Ref. [J. Yang, Y. Kurashige, F. R. Manby and G. K. L. Chan, J. Chem. Phys. 134, 044123 (2011)], to local coupled cluster singles and doubles theory (OSV-LCCSD). The method is implemented by modifying an efficient projected-atomic-orbital local coupled cluster program (PAO-LCCSD) described recently, [H.-J. Werner and M. Schu?tz, J. Chem. Phys. 135, 144116 (2011)]. By comparison of both methods we find that the compact representation of the amplitudes in the OSV approach affords various advantages, including smaller computational time requirements (for comparable accuracy), as well as a more systematic control of the error through a single energy threshold. Overall, the OSV-LCCSD approach together with an MP2 correction yields small domain errors in practical calculations. The applicability of the OSV-LCCSD is demonstrated for molecules with up to 73 atoms and realistic basis sets (up to 2334 basis functions).     

Computational studies of nonstoichiometric sodium auride clusters

The molecular structures of low-lying isomers of anionic and neutral sodium auride clusters have been studied computationally at the second-order M?ller-Plesset perturbation theory level using quadruple-ζ basis sets augmented with a double set of polarization functions. The first vertical detachment energies were calculated at the M?ller-Plesset level as the energy difference between the cluster anion and the corresponding neutral cluster. The photodetachment energies of higher-lying ionization channels were calculated by adding electronic excitation energies of the neutral clusters to the first vertical detachment energy. The excitation energies were calculated at the linear response approximate coupled-cluster singles and doubles level using the anionic cluster structures. The obtained ionization energies for NaAu(-), NaAu(2)(-), NaAu(3)(-), NaAu(4)(-), Na(2)Au(2)(-), Na(2)Au(3)(-), Na(3)Au(3)(-), and Na(2)Au(4)(-) were compared to values deduced from experimental photoelectron spectra. Comparison of the calculated photoelectron spectra for a few energetically low-lying isomers shows that the energetically lowest cluster structures obtained in the calculations do not always correspond to the clusters produced experimentally. Spin-component-scaled second-order M?ller-Plesset perturbation theory calculations shift the order of the isomers such that the observed clusters more often correspond to the energetically lowest structure, whereas the spin-component-scaled approach does not improve the photodetachment energies of the sodium aurides. The potential energy surface of the sodium aurides is very soft, with several low-lying isomers requiring an accurate electron correlation treatment. The calculations show that merely the energetic criterion is not a reliable means to identify the structures of the observed sodium auride clusters; other experimental information is needed to ensure a correct assignment of the cluster structures. The cluster structures of nonstoichiometric anionic sodium aurides have been determined by comparing calculated ionization energies for low-lying structures of the anionic clusters with experimental data.     

Dioxygen activation at non-heme diiron centers: characterization of intermediates in a mutant form of toluene/o-xylene monooxygenase hydroxylase

We report the generation and characterization of an intermediate in a mutant form of the toluene/o-xylene monooxygenase hydroxylase component from Pseudomonas stutzeri OX1. The reaction of chemically reduced I100W variant in the presence of the coupling protein, ToMOD, with dioxygen was monitored by stopped-flow UV/visible spectroscopy. Rapid-freeze quench (RFQ) samples were also generated for EPR and M?ssbauer spectroscopy. A transient species is observed in the UV/visible spectrum with an absorption maximum at 500 nm. EPR and M?ssbauer spectra of RFQ samples identified this species as a diiron(III,IV) cluster spin-coupled to a neutral W radical. A diamagnetic precursor to the mixed-valent diiron(III,IV) was also observed at an earlier time point, with M?ssbauer parameters typical of high-spin FeIII. We have tentatively assigned this antiferromagnetically coupled diiron(III) intermediate as a peroxo-bridged cluster, and this complex has also been observed in preliminary studies of the wild-type hydroxylase.     

New M(3)N@C(2n) endohedral metallofullerene families (M=Nd, Pr, Ce; n=40-53): expanding the preferential templating of the C(88) cage and approaching the C(96) cage

Three new families of trimetallic nitride template endohedral metallofullerenes (TNT EMFs), based on cerium, praseodymium, and neodymium clusters, were synthesized by vaporizing packed graphite rods in a conventional Kr?tschmer-Huffman arc reactor. Each of these families of metallofullerenes was identified and characterized by mass spectroscopy, HPLC, UV/Vis-NIR spectroscopy, and cyclic voltammetry. The mass spectra and HPLC chromatograms show that these larger metallic clusters are preferentially encapsulated by a C(88) cage. When the size of the cluster is increased, the C(96) cage is progressively favored over the predominant C(88) cage. It is also observed that the smaller cages (C(80)-C(86)) almost disappear on going from neodymium to cerium endohedral metallofullerenes. The UV/Vis-NIR spectra and cyclic voltammograms confirm the low HOMO-LUMO gap and reversible electrochemistry of these M(3)N@C(88) metallofullerenes.     

Characterization of the fluxes of neutral and positively charged clusters (Agn and Agn+; n≤4) produced by argon ion sputtering of silver

The emission of neutral and positively charged silver clusters during sputtering of a polycrystalline silver target by 5 keV Ar⁺ ion bombardment has been studied and the sputter ejected silver flux has been characterized. As a result, the silver flux is found to be strongly dominated byneutral clusters rather than cluster ions. The contribution of neutral clusters in the overall silver flux decreases rapidly and monotonically with increasing cluster size n and decreases, in addition, with decreasing bombarding energy. The well known alternation of the secondary ion intensities of Ag _n ⁺ as a function of cluster size (higher intensities for odd n) is found to be correlated with the effective ionization potentials of the corresponding sputtered neutral clusters.     

Density functional theory study of an all ferrous 4Fe-4S cluster

The all-ferrous, carbene-capped Fe(4)S(4) cluster, synthesized by Deng and Holm (DH complex), has been studied with density functional theory (DFT). The geometry of the complex was optimized for several electronic configurations. The lowest energy was obtained for the broken-symmetry (BS) configuration derived from the ferromagnetic state by reversing the spin projection of one of the high spin (S(i) = 2) irons. The optimized geometry of the latter configuration contains one unique and three equivalent iron sites, which are both structurally and electronically clearly distinguishable. For example, a distinctive feature of the unique iron site is the diagonal Fe···S distance, which is 0.3 ? longer than for the equivalent irons. The calculated (57)Fe hyperfine parameters show the same 1:3 pattern as observed in the M?ssbauer spectra and are in good agreement with experiment. BS analysis of the exchange interactions in the optimized geometry for the 1:3, M(S) = 4, BS configuration confirms the prediction of an earlier study that the unique site is coupled to the three equivalent ones by strong antiferromagnetic exchange (J > 0 in J Σ(j<4)?(4)·?(j)) and that the latter are mutually coupled by ferromagnetic exchange (J' < 0 in J' Σ(i相似文献