Hyperthermal (1-100 eV) nitrogen ion scattering damage to D-ribose and 2-deoxy-D-ribose films

Highly charged heavy ion traversal of a biological medium can produce energetic secondary fragment ions. These fragment ions can in turn cause collisional and reactive scattering damage to DNA. Here we report hyperthermal (1-100 eV) scattering of one such fragment ion (N(+)) from biologically relevant sugar molecules D-ribose and 2-deoxy-D-ribose condensed on polycrystalline Pt substrate. The results indicate that N(+) ion scattering at kinetic energies down to 10 eV induces effective decomposition of both sugar molecules and leads to the desorption of abundant cation and anion fragments. Use of isotope-labeled molecules (5-(13)C D-ribose and 1-D D-ribose) partly reveals some site specificity of the fragment origin. Several scattering reactions are also observed. Both ionic and neutral nitrogen atoms abstract carbon from the molecules to form CN(-) anion at energies down to approximately 5 eV. N(+) ions also abstract hydrogen from hydroxyl groups of the molecules to form NH(-) and NH(2) (-) anions. A fraction of OO(-) fragments abstract hydrogen to form OH(-). The formation of H(3)O(+) ions also involves hydrogen abstraction as well as intramolecular proton transfer. These findings suggest a variety of severe damaging pathways to DNA molecules which occur on the picosecond time scale following heavy ion irradiation of a cell, and prior to the late diffusion-limited homogeneous chemical processes.     

Low energy electron and O- reactions in films of O2 coadsorbed with benzene or toluene

A detailed understanding of nascent reactive events leading to DNA damage is required to describe ionizing radiation effects on living cells. These early, sub-picosecond events involve mainly low energy (E < 20 eV) secondary electrons (SE), and low energy (E < 5 eV) secondary ion (and neutral) fragments; the latter are created either by the primary radiation, or by SE via dissociative electron attachment (DEA). While recent work has shown that SE initiate DNA strand break formation via DEA, the subsequent damage induced by the DEA ion fragments in DNA, or its basic components is unknown. Here, we report 0-20 eV electron impact measurements of anion desorption from condensed films containing O2 and either benzene (C6H6), or toluene (C6H5CH3); these molecules represent the most fundamental structural analogs of pyrimidine bases. Our experiments show that all of the observed OH- yields are the result of reactive scattering of 1-5 eV O- fragments produced initially by DEA to O2. These O- reactions involve hydrogen abstraction from benzene or toluene, and result in the formation of benzyl radicals, or toluene radicals centered on either the ring or exocyclic methyl group. O- scatters over nm distances comparable to DNA dimensions, and reactions involve a transient anion collision complex. Anion desorption is found to depend on both, the temperature of hydrocarbon film formation (morphology), and the order of overlayer adsorption, e.g. O2 on benzene, or benzene on O2. Our measurements support the notion that in irradiated DNA similar secondary-ion reactions can be initiated by the abundant secondary electrons, and may lead to clustered damage.     

Hydride ion as a two-electron donor in a nanoporous crystalline semiconductor 12CaO.7Al2O3

The 12CaO.7Al2O3 (C12A7) crystal with a nanoporous lattice framework exhibits high electrical conductivity with an activation energy of approximately 1.5 eV when equilibrated in a hydrogen atmosphere above approximately 800 degrees C. The high conductivity is preserved in a quenched state below approximately 600 degrees C with a reduced activation energy of approximately 0.8 eV. Such complex behavior in electrical conductivity is associated with incorporation of hydride ions (H-) in cages of the lattice framework. Electromotive force measurements reveal that the major carrier for the conductivity is electron with a small contribution by proton (H+), ruling out the possibility of direct intercage migration of the H- ion. A combination of these observations with the ab initio calculations leads to the conclusion that the electrons are thermally generated from the H- ion by the dissociation into two electrons and an proton, which is further converted to an OH- ion via reaction with an extraframework oxide ion (O2-). The energy difference between the initial (H- + O2-) and the final (2e- + OH-) states as evaluated by the theoretical calculation is as small as approximately 1 eV, which agrees well with an experimentally obtained enthalpy change, approximately 1.4 eV. Thus, internal equilibration between the extraframework hydrogen and the oxygen species is responsible for the thermal generation of the carrier electron. It is also suggested that the same conductive (2e- + OH-) state is reached by the photoirradiation of H- -containing C12A7. In this case the photoionization of H- forms an electron and an Ho atom, which then forms an OH- ion and another electron with thermal assistance. The persistence of photoinduced conductivity is explained by the slow kinetics of the reverse process at room temperature.     

A vacuum ultraviolet photoionization mass spectrometric study of acetone

The photoionization and dissociative photoionization of acetone have been studied at the photon energy range of 8-20 eV. Photoionization efficiency spectra for ions CH3COCH3+, CH3+, C2H3+, C3H3+, C3H5+, CH(2-)CO+, CH3CO+, C3H4O+, and CH3COCH2+ have been measured. In addition, the energetics of the dissociative photoionization has been examined by ab initio Gaussian-3 (G3) calculations. The computational results are useful in establishing the dissociation channels near the ionization thresholds. With the help of G3 results, the dissociation channels for the formation of the fragment ions CH3CO+, CH2CO+, CH3+, C3H3+, and CH3COCH2+ have been established. The G3 results are in fair to excellent agreement with the experimental data.     

Selected ion flow tube study of the reactions between gas phase cations and CHCl2F, CHClF2, and CH2ClF

The branching ratios and rate coefficients have been measured at 298 K for the reactions between CHCl2F, CHClF2, and CH2ClF and the following cations (with recombination energies in the range 6.3-21.6 eV); H3O+, SFx+ (x = 1-5), CFy+ (y = 1-3), NO+, NO2+, O2+, Xe+, N2O+, O+, CO2+, Kr+, CO+, N+, N2+, Ar+, F+, and Ne+. The majority of the reactions proceed at the calculated collisional rate, but the reagent ions SF3+, NO+, NO2+, and SF2+ do not react. Surprisingly, although all of the observed product channels are calculated to be endothermic, H3O+ does react with CHCl2F. On thermochemical grounds, Xe+ appears to react with these molecules only when it is in its higher-energy 2P1/2 spin-orbit state. In general, most of the reactions form products by dissociative charge transfer, but some of the reactions of CH2ClF with the lower-energy cations produce the parent cation in significant abundance. The branching ratios produced in this study and by threshold photoelectron-photoion coincidence spectroscopy agree reasonably well over the energy range 11-22 eV. In about one-fifth of the large number of reactions studied, the branching ratios are in excellent agreement and appreciable energy resonance between an excited state and the ground state of the ionized neutral exists, suggesting that these reactions proceed exclusively by a long-range charge-transfer mechanism. Upper limits for the enthalpy of formation at 298 K of SF4Cl (-637 kJ mol-1), SClF (-28 kJ mol-1), and SHF (-7 kJ mol-1) are determined.     

Gas phase hydration and deprotonation of the cyclic C3H3+ cation. Solvation by acetonitrile, and comparison with the benzene radical cation

The binding energies of the first 5 H2O molecules to c-C3H3+ were determined by equilibrium measurements. The measured binding energies of the hydrated clusters of 9-12 kcal/mol are typical of carbon-based CH+...X hydrogen bonds. The ion solvation with the more polar CH3CN molecules results in stronger bonds consistent with the increased ion-dipole interaction. Ab initio calculations show that the lowest energy isomer of the c-C3H3+(H2O)4 cluster consists of a cyclic water tetramer interacting with the c-C3H3+ ion, which suggests the presence of orientational restraint of the water molecules consistent with the observed large entropy loss. The c-C3H3+ ion is deprotonated by 3 or more H2O molecules, driven energetically by the association of the solvent molecules to form strongly hydrogen bonded (H2O)nH+ clusters. The kinetics of the associative proton transfer (APT) reaction C3H3+ + nH2O --> (H2O)nH+ + C3H2* exhibits an unusually steep negative temperature coefficient of k = cT(-63+/-4) (or activation energy of -37 +/- 1 kcal mol(-1)). The behavior of the C3H3+/water system is exactly analogous to the benzene+*/water system, suggesting that the mechanism, kinetics and large negative temperature coefficients may be general to multibody APT reactions. These reactions can become fast at low temperatures, allowing ionized polycyclic aromatics to initiate ice formation in cold astrochemical environments.     

Existence of an exceptional reaction pathway for H3(+) formation observed in collision-induced dissociation of methane ions at 1000 eV

Dissociation of CH(4)(+) ions at 1000 eV induced by collision with Ar atoms was investigated by measuring the kinetic energies of the ionized fragments. At small scattering angles, including zero, H(+), H(2)(+), H(3)(+), CH(3)(+), CH(2)(+), CH(+), and C(+) fragments were observed. The attractive part of the potential in the CH(4)(+)-Ar collision system played an important role in the formation of the ionized fragments. Rainbow scattering, leading to a large scattering cross section, was shown to be responsible for the increased formation of H(3)(+). It is proposed that on collision-induced dissociation of CH(4)(+), its three hydrogen atoms, which form a triangle, simultaneously react and move together to form H(3)(+).     

C60与甲基醚CH3OCnH2n+1的气相离子分子反应研究

自宏观量合成和分离C₆₀以来,人们不断地合成各种功能化的C₆₀衍生物.在对C₆₀化学性质的认识过程中,气相离子化学一直起着十分重要的作用。     

Partial oxidation of propylene catalyzed by VO3 clusters: a density functional theory study

Density functional theory (DFT) calculations are carried out to investigate partial oxidation of propylene over neutral VO 3 clusters. C=C bond cleavage products CH 3CHO + VO 2CH 2 and HCHO + VO 2CHCH 3 can be formed overall barrierlessly from the reaction of propylene with VO 3 at room temperature. Formation of hydrogen transfer products H 2O + VO 2C 3H 4, CH 2=CHCHO + VO 2H 2, CH 3CH 2CHO + VO 2, and (CH 3) 2CO + VO 2 is subject to tiny (0.01 eV) or small (0.06 eV, 0.19 eV) overall free energy barriers, although their formation is thermodynamically more favorable than the formation of C=C bond cleavage products. These DFT results are in agreement with recent experimental observations. VO 3 regeneration processes at room temperature are also investigated through reaction of O 2 with the CC bond cleavage products VO 2CH 2 and VO 2CHCH 3. The following barrierless reaction channels are identified: VO 2CH 2 + O 2 --> VO 3 + CH 2O; VO 2CH 2 + O 2 --> VO 3C + H 2O, VO 3C + O 2 --> VO 3 + CO 2; VO 2CHCH 3 + O 2 --> VO 3 + CH 3CHO; and VO 2CHCH 3 + O 2 --> VO 3C + CH 3OH, VO 3C + O 2 --> VO 3 + CO 2. The kinetically most favorable reaction products are CH 3CHO, H 2O, and CO 2 in the gas phase model catalytic cycles. The results parallel similar behavior in the selective oxidation of propylene over condensed phase V 2O 5/SiO 2 catalysts.     

The elimination of a hydrogen atom in Na(H2O)n

By a systematic examination on Na(H2O)n, with n = 4-7, 9, 10, and 15, we demonstrate that a hydrogen loss reaction can be initiated by a single sodium atom with water molecules. This reaction is similar to the well-known size-dependent intracluster hydrogen loss in Mg+(H2O)n, which is isoelectronic to Na(H2O)n. However, with one less charge on Na(H2O)n than that on Mg+(H2O)n, the hydrogen loss for Na(H2O)n is characterized by a higher barrier and a more flexible solvation shell around the metal ion, although the reaction should be accessible, as the lowest barrier is around 8 kcal/mol. Interestingly, the hydroxide ion OH- produced in the process is stabilized by the solvation of H2O molecules and the formation of an ion pair Na+(H2O)4(H2O)n-l-4[OH-(H2O)l]. The activation barrier is reduced as the unpaired electron in Na(H2O)n moves to higher solvation shells with increasing cluster size, and the reaction is not switched off for larger clusters. This is in sharp contrast to the reaction for Mg+(H2O)n, in which the OH- ion is stabilized by direct coordination with Mg2+ and the reaction is switched off for n > 17, as the unpaired electron moved to higher solvation shells. Such a contrast illustrates the important link between microsolvation environment and chemical reactivity in solvation clusters.     

Weakly coordinating anions HA2-generated from oxoanions A- and their conjugate acids. Coordination equilibria,ionic conductivities,and the structures of [Cu2(H(CH3SO3)2)4]n and [Cu(CO)(H(CF3CO2)2)]2

The coordination or ion pairing of the hydrogen-bonded anions H(CF3CO2)2- and H(CH3SO3)2- to NEt4+, Li+, Cu+, and/or Cu2+ was investigated. The structure of [Cu2(H(CH3SO3)2)4]n consists of centrosymmetric dimeric moieties that contain two homoconjugated (CH3SO2O-H...OSO2CH3)- anions per Cu2+ ion, forming typical Jahn-Teller tetragonally elongated CuO6 coordination spheres. The oxygen atoms involved in the nearly linear O-H...O hydrogen bonds (O...O approximately 2.62 A) are not coordinated to the Cu2+ ions. The structure of Cu2(CO)2(H(CF3-CO2)2)2 consists of pseudo-C2-symmetric dimers that contain one homoconjugated (CF3COO-H...OCOCF3)- anion per Cu+ ion, forming highly distorted tetrahedral Cu(CO)O3 coordination spheres. Three of the four oxygen atoms in each hydrogen-bonded H(CF3CO2)2- anion are coordinated to the Cu+ ions, including one of the oxygen atoms in each O-H...O hydrogen bond (O...O approximately 2.62 A). Infrared spectra (v(CO) values) of Cu(CO)(CF3CO2) or Cu(CO)(CH3SO3) dissolved in acetonitrile or benzene, with and without added CF3COOH or CH3SO3H, respectively, demonstrate that HA2- anions involving carboxylates or sulfonates are more weakly coordinating than the parent anions RCO2- and RSO3-. Direct current conductivities of THF solutions of Li(CF3CO2) containing varying concentrations of added CF3COOH further demonstrate that Li+ and NEt4+ ion pair much more weakly with H(CF3CO2)2- than with CF3CO2-.     

Evidence of site-specific fragmentation on thioacetic acid, CH3C(O)SH, irradiated with synchrotron radiation around the S 2p and O 1s regions

Site-specific fragmentations following S 2p and O 1s photoexcitation of thioacetic acid, CH3C(O)SH, have been studied by means of synchrotron radiation. Total ion yield (TIY) spectra were measured and multicoincidence techniques, which include photoelectron-photoion coincidence (PEPICO) and photoelectron-photoion-photoion coincidence (PEPIPICO) time-of-flight mass spectrometry, were applied. The equivalent-core approximation was employed in order to estimate ionization transition values, and the observed peaks were tentatively assigned. A site-specific fragmentation is moderately observed by comparing the mass spectra collected at resonant energies around the inner and shallow inner shell S 2p and O 1s ionization edges. Beside H+ ion, the most abundant ions observed at the S 2p edge excitation were CH3CO+, SH+, S+, and CH3+. At the O 1s region the large CH3CO+ fragment was depressed, and small CHx+ (x = 0, 1, 2, 3), S+, and SH+ fragments were dominant. The dissociation dynamic for the main ion-pair production has been discussed. Two- and three-body dissociation channels have been observed in the PEPIPICO spectra, and the dissociation mechanisms were proposed.     

甲烷氧等离子体直接合成过氧化氢

本文利用介质阻挡放电(DBD)方法, 在室温和常压下将甲烷和氧气的混合气体进行等离子体活化, 通过甲烷和氧等离子体直接气相反应高收率合成H2O2. 该方法能有效克服氢氧直接法合成H2O2受到原料气配比严格限制的缺点.     

Dissociation of energy-selected c-C2H4S+ in a region 10.6-11.8 eV: threshold photoelectron-photoion coincidence experiments and quantum-chemical calculations

Dissociation of energy-selected c-C2H4S+ was investigated in a region of 10.6-11.8 eV with a threshold photoelectron-photoion coincidence technique and a synchrotron as a source of vacuum ultraviolet radiation. Branching ratios and average releases of kinetic energy in channels of formation of c-C2H4S+, CH3CS+, and HCS+ were obtained from well-resolved time-of-flight peaks in coincidence mass spectra. Measured average releases of kinetic energy for channel CH3CS+ + H of least energy are substantial and much greater than calculated with quasiequilibrium theory; in contrast, small releases of kinetic energy near the appearance onset for channel HCS+ + CH3 agree satisfactorily with statistical calculations. Calculations of molecular electronic structures and energetics of c-C2H4S+ and C2H3S+ isomers and various fragments and transition states were also performed with Gaussian 3 method to establish dissociation mechanisms. A predicted dissociation energy of 11.05 eV for c-C2H4S --> HCS+ + CH3 agrees with a linearly extrapolated threshold at 10.99+/-0.04 eV and a predicted dissociation mechanism that c-C2H4S+ isomerizes to CH3CHS+ before dissociating to HCS+ + CH3 supports the experimental results. The large releases of kinetic energy for channel CH3CS+ + H might result from a dissociation mechanism according to which c-C2H4S+ isomerizes to a local minimum CH3CSH+ and then dissociates through a transition state to form CH3CS+ + H.     

Probing the nature of the Co(III) ion in cobalamins: a comparison of the reaction of aquacobalamin (vitamin B12a) and aqua-10-chlorocobalamin with some anionic and N-donor ligands

To probe the cis effect of the corrin macrocycle in vitamin B12 derivatives, equilibrium constants for the substitution of coordinated H2O in aquacobalamin (vitamin B12a, H2OCbl+) and in aqua-10-chlorocobalamin, H2O-10-ClCbl+, (in which Cl has replaced the C10 H) by an exogenous ligand, L (L = an anion, NO2-, SCN-, N3-, OCN-, S2O3(2-), NCSe- or a neutral N-donor, CH3NH2, pyridine, imidazole) have been determined. The cis influence reported in the electronic spectra of the cobalamins is observed in the spectra of L-10-ClCbls as well. Anionic ligands bind more strongly to H2O-10-ClCbl+ than to H2OCbl+ with log K values between 0.10 and 0.63 (average 0.26) larger; the converse is true for the neutral N-donor ligands, where log K is between 0.17 and 0.3 (average 0.25) smaller. Semi-empirical molecular orbital (SEMO) calculations using the ZINDO/1 model on the hydroxo complexes show that charge density is delocalised from the axial donor atom to the metal and Cl. This explains why coordinated OH- is a poorer base in HO-10-ClCbl than in HOCbl and the pK(a) of H2O-10-ClCbl+ is lower than that of H2OCbl+. It further explains why, because of the ability of the metal in concert with the C10 Cl to accept charge density from the ligand, an anionic ligand will bind more strongly to Co(III) in H2O-10-ClCbl+ than in H2OCbl+. The kinetics of the replacement of coordinated H2O by two probe ligand, pyridine and azide, were determined. The rate constants for substitution of H2O in H2O-10-ClCbl+ by pyridine show saturation, whilst those for substitution by N3- do not; this is inconsistent with a purely dissociative mechanism and the reactions proceed through an interchange mechanism. The values of the activation parameters are more positive for the reaction between these ligands and H2OCbl+, than for their reaction with H2O-10-ClCbl+. This is interpreted to mean that the transition state in the reaction of H2O-10-ClCbl+ occurs earlier along the reaction coordinate. In the temperature range studied, H2O-10-ClCbl+ reacts more slowly with py and N3- than does H2OCbl+. SEMO calculations indicate that as the Co-O bond to the departing H(2)O molecule is stretched, the charge density on Co in H2OCbl+ is always lower than on Co in H2O-10-ClCbl+. This suggests that the former is a better electrophile towards the incoming ligand, and offers an explanation for the kinetics observations.     

Ion chemistry of NOO+

The kinetics for the reactions of NOO+ ions with neutral molecules having ionization potentials (IPs) from 9.27 to 15.58 eV was measured in a selected ion flow tube at 298 K. The NOO+ ions are produced from the reaction of N3+ + O2 and have been reacted with the following: NO, C6F6, CS2, CF3I, C3F6, OCS, C2H6, Xe, SO2, O3, N2O, CO2, Kr, CO, D2, and N2. Numerous types of reactions were observed with the various neutral reagents, including production of NO+ (which may involve loss of an O from the ion or addition of O to the neutral reactant, although the two channels could not be distinguished here), charge transfer, isomerization of NOO+ to ONO+, and hydride abstraction. High level theoretical calculations of the structures and energetics of the various isomers, electronic states, and transition states of NOO and NOO+ were performed to better understand the observed reactivity. All neutral species with an IP< or =11.18 eV were observed to react with NOO+ in part by charge transfer. Detailed calculations showed that the recommended adiabatic and vertical IPs of NOO are 10.4 and 11.7 eV, respectively, at the MRCISDQ/AVQZ level of theory. The observed experimental limit for charge transfer of 11.18 eV agreed well with the energetics of the final products obtained from theory if dissociation of the neutral metastable product occurred, i.e., the products were X+ +[O(3P) + NO(2Pi)], where [O(3P)+NO(2Pi)] formed via dissociation of metastable NOO. Charge exchange with neutral reagent X would, therefore, be exothermic if IP(X)<[IPad(NOO)-DeltaE(O+NO)-NOO]= approximately 11.1 eV, where IPad(NOO) is the adiabatic IP. The potential energy surface for the reaction of NOO+ with C2H6 was also calculated, indicating that two pathways for formation of HNO2 + C2H5 (+) exist.     

Molecular-beam experiments for photodissociation of propenal at 157 nm and quantum-chemical calculations for migration and elimination of hydrogen atoms in systems C3H4O and C3H3O

We investigated the dynamics of photodissociation of propenal (acrolein, CH(2)CHCHO) at 157 nm in a molecular beam and of migration and elimination of hydrogen atoms in systems C(3)H(4)O and C(3)H(3)O using quantum-chemical calculations. Compared with the previous results of photodissociation of propenal at 193 nm, the major difference is that the C(3)H(3)O fragment present at the 193-nm photolysis disappears at the 157-nm photolysis whereas the C(3)H(2)O fragment absent at 193 nm appears at 157 nm. Optimized structures and harmonic vibrational frequencies of molecular species with gross formula C(3)H(2-4)O were computed at the level of B3LYP/6-311G(d,p) and total energies of those molecules at optimized structures were computed at the level of CCSD(T)/6-311+G(3df,2p). Based on the calculated potential-energy surfaces, we deduce that the C(3)H(3)O fragment observed in the photolysis of propenal at 193 nm is probably CHCCHOH ((2)A") and/or CH(2)CCOH ((2)A") produced from an intermediate hydroxyl propadiene (CH(2)CCHOH) following isomerization. Adiabatic and vertical ionization potentials of eight isomers of C(3)H(3)O and two isomers of C(3)H(2)O were calculated; CHCCHOH ((2)A") and CH(2)CCOH ((2)A") have ionization potentials in good agreement with the experimental value of ～7.4 eV. We also deduce that all the nascent C(3)H(3)O fragments from the photolysis of propenal at 157 nm spontaneously decompose mainly to C(2)H(3) + CO and C(3)H(2)O + H because of the large excitation energy. This work provides profound insight into the dynamics of migration and elimination of hydrogen atoms of propenal optically excited in the vacuum-ultraviolet region.     

Theoretical and experimental study of the product branching in the reaction of acetic acid with OH radicals

The product distribution of the reaction of acetic acid, CH(3)COOH, with hydroxyl radicals, OH, was studied experimentally and theoretically. Mass-spectrometric measurements at 290 K and 2 Torr of He of the CO(2) yield versus the loss of acetic acid yielded a branching fraction of 64 +/- 14% for the abstraction of the acidic hydrogen as follows: CH(3)COOH + OH --> CH(3)COO + H(2)O --> CH(3) + CO(2) + H(2)O. A quantum chemical and theoretical kinetic analysis showed that the abstraction of the acidic hydrogen is enhanced relative to the abstraction of -CH(3) hydrogens because of the formation of a strong pre-reactive H-bonded complex, where the H-bonds are retained in the H-abstraction transition state. The potential energy surface of the reaction is explored in detail, and the reaction products of the individual channels are identified. The theoretical product branching is found to be critically dependent on the energetic and rovibrational differences between the H-abstraction transition states.     

On the formation of radical dications of protonated amino acids in a "microsolution" of water or acetonitrile and their reactivity towards the solvent

In high-energy collisions (50 keV) between O2 and protonated amino acids AH+, radical dications AH2+* are formed for A = Phe, His, Met, Tyr, and Trp. When solvated by water or acetonitrile (S), AH2+*(S)1,2 are formed for A = Arg, His, Met, Tyr, and Trp. The stability of the hydrogen-deficient AH2+* in the "microsolution" depends on the energetics of the electron transfer reaction AH2+* +S --> AH++S+*, the hydrogen abstraction reaction AH2+*+S --> AH2(2+)+[S-H]*, and the proton transfer reaction AH2+* + S --> A+*+SH+. Using B3LYP/ 6-311+G(2d,p)//B3LYP/6-31+G(d) model chemistry, we describe these three reactions in detail for A=Tyr and find that the first two reactions are unfavorable whereas the third one is favorable. However, energy is required for the formation of Tyr+* and SH+ from TyrH2+*(S) to overcome the Coulomb barrier, which renders the complex observable with a life-time larger than 5 micros. The ionization energy, IE, of TyrH+ is calculated to be 11.1 eV in agreement with an experimental measurement of 10.1+/-2.1 eV ([IE(CH3CN)+IE(Tyr)]/ 2); hydration further lowers the IE by 0.3 eV [IE(TyrH+(H2O) = 10.8 eV, calculated]. We estimate the ionization energies of TrpH+, HisH+, and MetH+ to be 10.1+/-2.1 eV, 12.4+/-0.2 eV, and 12.4+/-0.2 eV, and that of PheH+ to be larger than 12.6 eV.     

Conformational and tautomeric eccentricities of 2-acetyl-1,8-dihydroxynaphthalenes

Tautomerism in aromatic systems with oxygen substitutents is rare. This is investigated in 2-acetyl-1,8-dihydroxy-3,6-dimethylnaphthalene (1) and in 2,7-diacetyl-1,8-dihydroxy-3,6-dimethylnaphthalene (2). The tautomeric nature of 2-acetyl-1,8-dihydroxy-3,6-dimethylnaphthalene is supported by long-range hydrogen-hydrogen coupling between the OH-1 and the OH-8 and by the isotope effects on 13C caused by deuteration at the CH3C==O methyl group. Compound 2 participates in a degenerate equilibrium between two equivalent nonsymmetrical rotamers (2A and 2B), each having two intramolecular O...HO hydrogen bonds: one involving an acetyl oxygen and the neighboring hydroxyl group, and the other between the oxygen centers at positions 1 and 8. In addition, each rotamer is involved in a tautomeric equilibrium, with a structure having an OH-substituted exocyclic double bond (2AT or 2BT).DFT calculations for a large set of compounds highlight the factors controlling the unusual rotational and tautomeric behaviors. A very important factor seems to be the repulsive interaction between the O-1 and O-8 centers, which is modulated by formation of an OH-1...O-8 or OH-8...O1 hydrogen bond. Steric interactions, mesomeric release of electrons from the oxygen at position 8, and a strong OH...O...C hydrogen bond are other factors.Solid-state 13C NMR spectra of 2,7-diacetyl-1,8-dihydroxy-3,6-dimethylnaphthalene at different temperatures demonstrated no averaging in the solid, whereas partially deuterated 2-acetyl-1,8-dihydroxy-3,6-dimethylnaphthalene showed an isotope effect at C-1 of 1.5 ppm, indicating tautomerism in the solid state.