Gene Expression Profile of Prostate Cancer Patients by Chemiluminescent Analysis

Abstract

The heterogeneous and multifactorial nature of prostate cancer that generates differential gene expression patterns in tumor cells leads us to investigate the molecular mRNA profiling of 14 genes through streptavidin-alkaline phosphatase–labeled RNA probes from tissue samples with prostate cancer and benign prostatic hyperplasia. Hybridizations were performed using cDNA amplification for each gene spotted onto positively charged nylon membranes and densitometry readings. The constitutive gene GAPDH was used to normalize the data. The methods developed in this study may be applicable to the prostate cancer diagnosis using AR, CEACAM-1, DD3 (also called PCA3), OPN-1, and PSMA significant differential expression.     

Kinetics and mechanism of the reactions of o- and p-nitrohalobeszenes with the sodium salt of ethyl cyanoacetate carbanion: a non-chain radical nucleophilic substitution mechanism

The nucleophilic substitution reactions of o-nitroehlorobenzene (1a), o-nitrobromobenzene (lb), p-nitrofluorobenzene (1c), p-nitrochlorobenzene (1d), p-nitrobromobenzene (1e), and p-nitroiodobenzene (1f) with the sodium salt of ethyl cyanoaceaate carbanion (2) in DMSO all gave the corresponding substitution producss in almost quantitative yields. With the exception of the reaction of 1c with 2, the ESR spectra for the corresponding reactive intermediates, the radical anions of nitrophenyl halides were recorded. The relative intensity of ESR absorption versus time curves at various temperatures for the o-nitrochlorobenzene radical anion (3a), p-nitrochlorobenzene radical anion(3d), and p-nitrobromobenzene radical anion (3e) formed in the reactions of 1a, 1d, and 1e with 2 respectively in DMSO were measured by means of an ESR F/F lock technique. The kinetic curves obtained are consistent with the successive pseudo first-order reaction, and the rate constanss for the single electron transfer reactions of 1a, 1d, and 1e with 2 respectively and for the dissociation reactions of 3a, 3d, and 3e and the corresponding activaiion parameters were calculated. The results provide conclusive evidence that the thermal reactions of o- and p-nitrohalobenzeses (with the possible exception of 1c) with 2 proceed via a non-chann radical nucleophilic substitution mechanism.     

Genome wide characterization of the SERK/SERL gene family in Phalaenopsis equestris,Dendrobium catenatum and Apostasia shenzhenica (Orchidaceae)

Somatic embryogenesis receptor kinases (SERKs) play a significant role in morphogenesis, stress/defense and signal transduction. In the present study, we have identified two SERK and 11 SERK-like (SERL) genes in Phalaenopsis equestris, two SERK and 11 SERL genes in Dendrobium catenatum, and one SERK and eight SERL genes in Apostasia shenzhenica genome. Characterization of the SERK proteins revealed the presence of a signal peptide, a leucine zipper, five leucine-rich repeats (LRRs), a serine proline proline (SPP) motif, a transmembrane region, a kinase domain, and a C-terminus. Most of the SERK/SERL proteins were characterized with similar physicochemical properties. The presence of transmembrane region predicted their membranous localization. Tertiary structure prediction of all the five identified SERK proteins had sequence identity with BAK1 protein of Arabidopsis thaliana. Generally, all the SERK/SERL genes shared similar gene architecture and intron phasing. Gene ontology analysis indicated the role of SERKs in receptor and ATP binding, signal transduction, and protein phosphorylation. Phylogenetic analysis revealed the clustering of SERKs and SERLs in distinct clades. Expression of SERKs in reproductive tissues like floral bud, floral stalk, whole flower and pollen was reported to be higher than their expression in vegetative tissues with an exception of PeSERK1 and DcSERK1 which showed higher expression in leaves and roots, respectively. Likewise, a higher expression of AsSERK1 was observed in tubers. However, lower expression of SERLs was observed in majority of tissues studied irrespective of their vegetative or reproductive origin. This work paves way for future studies involving functional characterization of SERK/SERLs and their potential role in embryogenesis/organogenesis as an aid to regeneration and multiplication of endangered orchids.     

Toll-like Receptors Gene Expression in the Gastrointestinal Tract of Salmonella Serovar Pullorum-Infected Broiler Chicken

Salmonella enterica serovar Pullorum causes substantial mortality in chicks as well as results in persistent infection and vertical transmission in layer birds. An effective innate immune response in the early stages of infection could reduce bacterial colonization and mortality in chicks and persistency of infection in later stages. Toll-like receptors (TLRs), important components of innate immune response, plays a pivotal role in early recognition of pathogen as well as in the initiation of robust and specific adaptive immune response. In the present study, we quantified the expression levels of chicken TLRs (1LA, 1LB, 2A, 2B, 3, 4, 5, 7, 15, and 21) mRNA by quantitative real-time PCR in the gastrointestinal (GI) tissues (duodenum, jejunum, ileum, and cecum) of 3-day-old broiler chicks after 24 h of oral infection with S. enterica serovar Pullorum. We found significant upregulation of TLRs (TLR2, TLR4, TLR21) mRNA expressions in GI tract tissues after S. Pullorum infection. The exceptions were for TLR3 and TLR15 with decrease in the expression levels in the jejunum after infection. TLR4 gene expression was significantly (P?<?0.05) upregulated in the duodenum and ileum of infected chicks. Gene expression for some of the TLRs (TLR1LA, ILB, 2B, and TLR5) remained unchanged after infection with S. Pullorum in all the GI tissues studied. Most substantial change in gene expression was found for TLR21, being significantly (P?<?0.05) upregulated in all the tissues investigated. The differential expression levels of TLRs shed light on tailored innate immune response induced by S. Pullorum during the early stages of infection in chicks.     

Fingerprints of Phalaenopsis Tissues in Growth and Spike Induction Periods—A Solid‐state 13C NMR Approach

Solid‐state Nuclear Magnetic Resonance (ss‐NMR) ¹³C single‐pulse excitation spectroscopy in combination with the magic‐angle spinning (MAS) technique was applied to a series of Phalaenopsis tissues, including the leaf, sheath, stem, and root, at different growth and spiking periods. Compared with{¹H}/¹³C cross‐polarization MAS spectra, the ¹³C single‐pulse excitation MAS spectra displayed very distinct spectral patterns, recognizable as fingerprints of the tissues studied. ¹Here, we demonstrate that solid‐state ¹³C single‐pulse excitation NMR spectroscopy provides a direct and robust analytical tool for studying the various tissues of Phalaenopsis in different growth and spiking induction periods.     

4-Ketozeinoxanthin,a novel carotenoid produced in Escherichia coli through metabolic engineering using carotenogenic genes of bacterium and liverwort

In order to produce a novel keto-carotenoid in Escherichia coli, we introduced the marine bacterial carotenoid ketolase gene (crtW) into pathway-engineered E. coli producing carotenoids of plant origin, which carried the lycopene biosynthesis genes (crtE, crtB, and crtI) from soil bacterium Pantoea ananatis and the liverwort Marchantia polymorpha genes that encode lycopene β-cyclase (MpLCYb), lycopene ε-cyclase (MpLCYe), and β-carotenoid hydroxylase (MpBHY). A novel keto-carotenoid (1) was produced by these carotenoid biosynthesis genes in E. coli along with α-echinenone, adonirubin, and adonixanthin. The structure of 1 was determined as (3S,6′R)-3-hydroxy-β,ε-caroten-4-one based on Uv–vis, MS, ¹H NMR, and CD spectral data. This compound was named 4-ketozeinoxanthin and showed anti-tumor-promoting activity.     

Rapid and accurate amperometric determination of acetaminophen in pharmaceutical preparations and spiked human blood serum samples at cadmium pentacyanonitrosylferrate modified glassy carbon electrode

The present work describes a rapid and accurate amperometric technique for the determination of acetaminophen (ACT) in pharmaceutical preparations and human blood serum, based on electrocatalytic oxidation of ACT at a glassy carbon electrode modified by cadmium pentacyanonitrosylferrate (CdPCNF) film. The electrocatalytic response of the modified GC electrode was linear over the concentration of 1.64-52.90 μM. The limit of detection was found to be 2.04 μM by amperometric technique. The method was successfully utilized for the determination of ACT in various pharmaceutical preparations and the results have been statistically compared with those obtained by the official method. The interference of some pharmaceutical and biological compounds was investigated. The results of interference study showed that the Nafion-coated CdPCNF|GC electrode can be utilized as a selective amperometric sensor for acetaminophen determination in human blood serum. The mean value of rate constant k for catalytic reaction, and the diffusion coefficient of ACT (D) in the phosphate buffer solution of pH 7.2 were found to be 4.27 × 10² M?¹ s?¹, and (4.25 ± 0.33) × 10^?6 cm² s^?1, respectively.     

Vibrational spectra,methyl torsional potential functions,internal rotational potential functions,and conformational properties of ethyl vinyl ether

The vibrational spectra of ethyl vinyl ether in both the fluid and solid states have been recorded from 20 to 3500 cm^?1. The 33 fundamental modes of vibration have been assigned. Three rotational isomers have been observed and their structures have been determined. The most stable conformer, s-cis/s-trans, is planar and of C_s symmetry. The two less stable rotamers, skew/s-trans and skew/gauche, are non-planar and of C_i molecular symmetry. The barrier to internal rotation of the methyl rotor has been determined for each conformation; these barriers are 3.43 kcal mol^?1 (s-cis/s-trans), 3.35 kcal mol^?1 (skew/s-trans) and 3.19 kcal mol^?1 (skew/gauche). A potential function for each of the two asymmetric internal rotations has been calculated and barriers to conformer interconversion have been determined. From the asymmetric potential function calculations, ΔH, the enthalpy difference between the conformers, has been determined. The s-cis/s-trans conformer is 1.87 kcal mol^?1 more stable than the skew/s-trans conformer; the skew/s-trans conformer is more stable than the skew/gauche conformer by 1.10 kcal mol^?1. The energetics of conformer interconversion and methyl internal rotation have been described in terms of molecular geometry and non-bonded interactions. These results are compared to those found in other alkyl vinyl and dialkyl ethers.     

Nitric Oxide Is Essential for Melatonin to Enhance Nitrate Tolerance of Cucumber Seedlings

Melatonin (MT) and nitric oxide (NO) in plants can function cooperatively to alleviate salt stress, sodic alkaline stress and immune response, as well as adventitious root formation. The interaction of MT and NO on the nitrate stress tolerance of cucumber seedlings are not well understood. We investigated the effects of exogenous MT, NO donor (SNP) and NO scavenger (cPTIO) on the growth; photosynthesis; characteristics of root morphological; accumulation of mineral elements, endogenous NO, MT, IAA and ABA; and related genes expression in cucumber (Cucumis sativus L. “Jin You No. 1”) seedlings grown under high nitrate condition (HN). The results showed that MT and NO independently alleviated the inhibition of growth and photosynthesis capacity of cucumber seedlings under nitrate stress. NO was required for MT to enhance the root activity, root length, lateral root number and the accumulation of calcium, magnesium and iron in the roots of cucumber seedlings grown under nitrate stress. Consistently, the expression of adventitious rootless 1 gene (CsARL1) was modulated. Furthermore, exogenous MT induced accumulation of endogenous MT, NO, indole-3-acetic acid (IAA) and abscisic acid (ABA), mainly within 24 h after treatment, in which MT and NO were further increased at 48 h and 96 h, IAA and ABA were further increased at 16 h in the presence of SNP. In contrast, the accumulation of endogenous IAA, MT and ABA slightly decreased within 24 h, NO significantly decreased at 192 h in the presence of cPTIO. Correspondingly, the expression levels of genes involved in nitrogen metabolism (CsNR1 and CsNR2), MT metabolism (CsT5H, CsSNAT2 and Cs2-ODD33), auxin carriers and response factors (CsAUX1, CsGH3.5, CsARF17), ABA synthesis and catabolism (CsNCED1, CsNCED3 and CsCYP707A1) were upregulated by MT, in which CsNR1, CsNR2, CsAUX1, CsNCED3 and CsT5H were further induced in the presence of SNP in roots of cucumber seedlings. These observations indicated that NO act as a crucial factor in MT, alleviating nitrate stress through regulating the mechanism of root growth in cucumber seedlings.     

Global expression analysis of CESA and CSL genes in Arabidopsis

We have used Affymetrix gene chips to measure the expression of 10 CESA and 29 CSL genes of Arabidopsis in different developmental stages or organs. These measurements reveal that many of the genes exhibit different levels of expression in the various organs. While several CESA genes are highly expressed in all the tissues examined, very few CSL genes approach such high levels of expression. This suggests that the CSL genes either encode enzymes for the synthesis of minor components of cell walls or are expressed only in specific cell types. The expression data also highlights the potential importance of the CESA genes for primary and secondary cell wall formation during different developmental stages and in the different organs examined.     

cDNA cloning,expression and bioinformatical analysis of Tssk genes in tree shrews

Tree shrews are more closely related to primate animals than rodents in many aspects.In addition, they also possess several advantageous characteristics including small body size, high brain-to-body mass ratio, low cost of feeding and maintenance, short reproductive cycle and life span, which make them promising novel laboratory animals to replace more precious larger primate animals. Testis-specific serine/threonine kinase (Tssk) plays important roles in spermatogenesis and/or the regulation of sperm function. However, studies on Tssk in tree shrews have not been reported yet. In the present study, the full-length sequences of five members of the Tssk family in tree shrews were cloned and their CDS region sequences were analyzed by basic bioinformatics. The phylogenetic tree and prokaryotic protein expression system of Tssk gene of tree shrews were constructed. The mRNA expressions of Tssk genes in 11 tissues/organs from tree shrews were studied. The results showed that: 1. the length of the CDS region of tree shrew Tssk gene for Tssk1B, Tssk2, Tssk3 (variant X1 / X2), Tssk4 (variant X1 / X2) and Tssk6 is 1080bp, 1077bp, 867 / 807bp, 1014 / 984bp, 822bp, respectively, encoding 359, 358, 288/268, 337/327 and 273 amino acids, respectively; the cloned sequences of Tssk genes have been submitted to GenBank with the following accession numbers: KX091161(Tssk1B), KX091162(Tssk2), KX091163(Tssk3 variant X1)/KX091164(Tssk3 variant X2), KX091165(Tssk4variant X1)/KX091166(Tssk4variant X2), KX091160(Tssk6). 2. All tree shrew Tssk proteins distribute in cytoplasm, indicating that they are hydrophilic and non-secretory proteins, with multiple phosphorylation sites of serine and/or threonine. In addition, they are all mixed proteins with similar tertiary structures sharing a highly conserved functional domain of S_TKc (Serine/Threonine protein kinases, catalytic domain). 3.The molecular phylogenetic tree of five Tssk genes in tree shrews indicates that they are neither rodent nor primate animal, but are closely related to primate animals. 4. Five members of the Tssk recombinant proteins in tree shrews were successfully obtained using the constructed prokaryotic protein expression system. 5. Five Tssk genes are specifically expressed in the testis and/or sperm of tree shrews. Additionally, small amount of Tssk1B was expressed in several tissues other than testis and sperm. Limited mRNA levels of Tssk2 and Tssk4 were expressed in the brain, while mRNA of Tssk3 or Tssk6 could only be detected in the testis and sperm.This study will provide fundamental data on reproductive biology of tree shrews, which paves a way for further studying Tssk’s biological function in this novel model animal.     

Synthesis, structural elucidation and biological activities of organotin(IV) derivatives of (E)-3-(4-methoxyphenyl)-2-(4-chlorophenyl)-2-propenoic acid

A new series of di- and tri-organotin(IV) compounds with the general formula R_4?n SnL _n , where R?=?Me (1,2), Et (3), n-Bu (4,5), n-Oct (6), Ph (7) and L?=?(E)-3-(4-methoxyphenyl)-2-(4-chlorophenyl)-2-propenoate, were synthesized by reaction of silver salt of ligand or ligand acid with diorganotin dichloride/oxide and triorganotin chloride in 2:1 and 1:1 molar ratio, respectively. These compounds were characterized by elemental analyses, FT-IR, multinuclear (¹H, ¹³C, ¹¹⁹Sn) NMR and mass spectrometry. The spectroscopic results revealed that all the diorganotin(IV) compounds possess trigonal bipyramidal structures in solution and octahedral geometry in the solid state around the tin atom. A linear polymeric trigonal bipyramidal structure in the solid state and a tetrahedral environment around the tin atom in non-coordinating solvents has been proposed for the triorganotin(IV) compounds. All synthesized compounds were tested in vitro against a number of microorganisms to assess their biocidal activity. These studies revealed that ligand acid and some of its organotin compounds show promising activity against different strains of bacteria and fungi but lowered than reference drugs.     

A New Butyrate Releaser Exerts a Protective Action against SARS-CoV-2 Infection in Human Intestine

Butyrate is a major gut microbiome metabolite that regulates several defense mechanisms against infectious diseases. Alterations in the gut microbiome, leading to reduced butyrate production, have been reported in patients with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. A new butyrate releaser, useful for all the known applications of butyrate, presenting physiochemical characteristics suitable for easy oral administration, (N-(1-carbamoyl-2-phenyl-ethyl) butyramide (FBA), has been recently developed. We investigated the protective action of FBA against SARS-CoV-2 infection in the human small intestine and enterocytes. Relevant aspects of SARS-CoV-2 infection were assessed: infectivity, host functional receptor angiotensin-converting enzyme-2 (ACE2), transmembrane protease serine 2 (TMPRSS2), neuropilin-1 (NRP1), pro-inflammatory cytokines expression, genes involved in the antiviral response and the activation of Nf-kB nuclear factor (erythroid-derived 2-like) 2 (Nfr2) pathways. We found that FBA positively modulates the crucial aspects of the infection in small intestinal biopsies and human enterocytes, reducing the expression of ACE2, TMPRSS2 and NRP1, pro-inflammatory cytokines interleukin (IL)-15, monocyte chemoattractant protein-1 (MCP-1) and TNF-α, and regulating several genes involved in antiviral pathways. FBA was also able to reduce the number of SARS-CoV-2-infected cells, and ACE2, TMPRSS2 and NRP1 expression. Lastly, through the inhibition of Nf-kB and the up-regulation of Nfr2, it was also able to reduce the expression of pro-inflammatory cytokines IL-15, MCP-1 and TNF-α in human enterocytes. The new butyrate releaser, FBA, exerts a preventive action against SARS-CoV-2 infection. It could be considered as an innovative strategy to limit COVID-19.     

Conformational study of the cembranolide diterpene denticulatolide by molecular mechanics method

The most stable conformation of denticulatolide (1), an ichthyotoxic cembranolide, obtained as a major metabolite of the soft coral, Lobophytum denticulatum, was given by molecular mechanics calculations and it was confirmed by ¹H NMR measurement. The geometry of 14-membered carbocycle of 1 was found to be different from that of derivative (2) especially around the juncture part of γ-lactone. The molecular mechanics calculation successfully reproduced the conformational changes between 1 and 2.     

Molecular Insight of Putative Pathogenicity Markers with ESBL Genes and Lipopolysaccharide in Laribacter hongkongensis

Laribacter hongkongensis is an emerging bacterial pathogen causing gastroenteritis and traveller’s diarrhoea. However, pathogenicity of L. hongkongensis has not yet been properly understood. We therefore, investigated putative pathogenicity markers like elt, est, stx1, stx2, eae, eaf, EAgg, bfpA, Int I, Int II, Int III and cnf respectively in strains received from Queen Mary Hospital, Hong Kong University. Above genes were commonly found among pathogenic member genera of Enterobacteriaceae-causing diarrhoea. Received strains were confirmed microbiologically and by 16S ribosomal RNA (rRNA) sequencing. Cultivability was examined using 23 different commercially available microbial growth media followed by antibiotic susceptibility test, lipopolysaccharide (LPS) extraction and raising antisera in rabbit against heat-killed L. hongkongensis. Moreover, Escherichia coli classification genes chuA, yjaA, TspE4 and extended spectrum beta lactamase (ESBL) genes like TEM, SHV, OXA, CTXM, CTXM1 and CTXM9 were also examined by PCR assay. Results showed the possession of eae, bfpA, Int and CTXM9 respectively for putative virulence. Furthermore, purity of extracted LPS was confirmed by HPLC, and raised serum was found useful in diagnosis of LPS; bacterium thus can be employed for immunodiagnostics.     

Ternary Reciprocal System K,Pb∥Cl,WO<Subscript>4</Subscript>

The phase diagram of the ternary reciprocal system K, Pb∥Cl, WO₄ was studied for the first time by the calculation–experimental method and differential thermal and X-ray powder diffraction analyses. Chemical interactions between components were described, metathesis and complexation reactions were revealed, and the coordinates of binary and ternary eutectics were found (mol %): e₄(410°C, 48% KCl, 52% PbCl₂), e₅(424°C, 23% KCl, 77% PbCl₂), P(490°C, 63.5% KCl, 36.5% PbCl₂), e₆(487°C, 91% PbCl₂, 9% PbWO₄), e₇(428°C, 30.5% KCl, 60.5% PbCl₂, 9% PbWO₄) (eutectic in the stable section D₂–PbWO₄), e₈(650°C, 80% KCl, 20% PbWO₄), e₉(650°C, 70% KCl, 15% K₂WO₄, 15% PbWO₄) (binary eutectic in the stable section D₁–KCl), E₁(620°C, 59% KCl, 34% K₂WO₄, 7% PbWO₄), E₂(640°C, 75% KCl, 5% K₂WO₄, 20% PbWO₄), E3(400°C, 46% KCl, 6% PbWO₄, 48% PbCl₂), E₄(410°C, 21% KCl, 9% PbWO₄, 70% PbCl₂), and P_о(468°C, 56% KCl, 10% PbWO₄, 34% PbCl₂).