Olfactory receptors: molecular basis for recognition and discrimination of odors

The daunting task of our nose to detect and discriminate among thousands of low-molecular-weight organic compounds with diverse chemical structures and properties requires an enormous molecular recognition capacity. This is based on distinct proteins, capable of recognizing and binding odorous compounds, including odorant-binding proteins, which are supposed to shuttle odorous compounds through the nasal mucus, and most notably the odorant receptors, which are heptahelical membrane proteins coupling via G-proteins onto intracellular transduction cascades. From more than a thousand genes each olfactory neuron is supposed to express only one receptor subtype. Receptors appear to be selective but rather non-specific—i.e. a distinct odorant activates multiple receptors and individual receptors respond to multiple odorants. It is the molecular receptive range of its receptor type which determines the reaction spectrum of a sensory neuron. Populations of cells equipped with the same receptor type project their axons to common glomeruli, thereby transmitting the molecular receptive range of a receptor type into the receptive field of glomerulus. Recent insight into the molecular basis of odor recognition and the combinatorial coding principles of the olfactory system may provide some clues for the design and development of technical sensors, electronic noses. In this review more emphasis has been placed on physiological rather than analytical aspects.     

Design,Synthesis, and In Vitro Evaluation of Novel Indolyl DiHydropyrazole Derivatives as Potential Anticancer Agents

Indoles derived from both natural sources or artificial synthetic methods have been known to interact with aryl hydrocarbon receptors (AhR), and exhibit anticancer activity. In light of these attractive properties, a series of hybrid molecules with structural features of indoles, i.e., those bearing a pyrazoline nucleus, were evaluated for their enhanced anticancer activity. The designed molecules were subjected to molecular docking in order to screen for potential AhR interacting compounds, and the identified indolyl dihydropyrazole derivatives were synthesized. The synthesized compounds were characterized, and their cytotoxicity was evaluated against four human cancer cell lines using the MTT assay. Based on the Glide g-score, H-bonding interactions and bonding energy of 20 candidate molecules were selected for further analysis from the 64 initially designed molecules. These candidate molecules have shown promising anti-proliferative activity against the cell lines tested. Among these candidate molecules, the compounds with hydroxy phenyl substitution on the pyrazoline ring have shown potent activity across all the tested cell lines. The designed scaffold was proven effective for screening potential candidate molecules with anticancer properties, and may be further optimized structurally for yielding the ideal anti-tumorigenic compound for the treatment of various cancers.     

分子钳人工受体研究进展

分子识别是生物体系的基本特征, 并在生命活动中起中心作用. 利用合成的人工受体与适当底物间的分子识别以建立化学模型或化学仿生体系对生命过程中的分子识别现象进行模拟研究是生物有机化学和超分子化学前沿富于挑战的课题之一. 按照不同的隔离基, 综述了分子钳人工受体的研究进展.     

Visualization of molecular recognition: a novel system based on charge-transfer complexes composed of 1,1'-bi-2-naphthol derivatives and p-benzoquinone

[reaction: see text] Charge-transfer (CT) complexes composed of 1,1'-bi-2-naphthol derivatives as an electron donor and p-benzoquinone as an acceptor serve as an excellent host system for visual molecular recognition. This is because they form inclusion crystals with guest aromatic compounds which display remarkably different colors depending on the structure of the component molecules and on the method of crystallization (i.e., solution crystallization or solid cogrinding of component crystals).     

微波干法合成脱氧胆酸分子钳人工受体

在微波辐射无溶剂条件下, 以固体K₂CO₃为载体, 脱氧胆酸甲酯与芳酰氯反应合成了11个脱氧胆酸分子钳人工受体, 其中5个为新化合物, 所有化合物的结构均经¹H NMR, IR, MS及元素分析所确证. 同传统方法相比, 该法具有简单、安全、快速、有效、对环境友好等优点. 同时考察了这类受体对中性和手性分子的识别性能. 结果表明, 这类分子钳受体不但对中性分子具有识别性能, 而且对D/L-氨基酸甲酯具有对映选择性识别性能.     

Controlled Stacking and Unstacking of Peripheral Chlorophyll Units Drives the Spring‐Like Contraction and Expansion of a Semi‐Artificial Helical Polymer

Developing new strategies for controlling polymer conformations through precise molecular recognition can potentially generate a machine‐like motion that is dependent on molecular information—an important process for the preparation of new intelligent nanomaterials (e.g., polymer‐based nanomachines) in the field bordering between polymer chemistry and conventional supramolecular sciences. Herein, we propose a strategy to endow a helical polymer chain with dynamic spring‐like (contraction/expansion) motion through the one‐dimensional self‐assembly (aggregation/disaggregation) of peripheral amphiphilic molecules. In this developing system, we employed a semi‐artificial helical polysaccharide presenting peripheral amphiphilic chlorophyll units as a power device that undergoes contractive motion in aqueous media, driven by strong π–π interactions of its chlorophyll units or by cooperative molecular recognition of bipyridyl‐type ligands through pairs of chlorophyll units, thereby converting molecular information into the regulated motion of a spring. In addition, this system also undergoes expansive motion through coordination of pyridine. We anticipate that this strategy will be applicable (when combined with the established wrapping chemistry of the helical polysaccharide) to the development of, for example, drug carriers (e.g., nano‐syringes), actuators (stimuli‐responsive films), and directional transporters (nano‐railways), thereby extending the frontiers of supramolecular science.     

Investigation on the Surface‐Confined Self‐Assembly Stabilized by Hydrogen Bonds of Urea and Amide Groups: Quantitative Analysis of Concentration Dependence of Surface Coverage

Formation of a hydrogen‐bond network via an amide group is a key driving force for the nucleation–elongation‐type self‐assembly that is often seen in biomolecules and artificial supramolecular assemblies. In this work, rod‐coil‐like aromatic compounds bearing an amide ( 1 a – 3 a ) or urea group ( 1 u – 3 u ) were synthesized, and their self‐assemblies on a 2‐D surface were investigated by scanning tunneling microscopy (STM). According to the quantitative analysis of the concentration dependence of the surface coverage, it was revealed that the strength of the hydrogen bond (i.e., amide or urea) and the number of non‐hydrogen atoms in a molecular component (i.e., size of core and length of alkyl side chain) play a primary role in determining the stabilization energy during nucleation and elongation processes of molecular ordering on the HOPG surface.     

胆甾类人工受体的分子识别研究进展

人工受体分子识别研究是生物有机化学的前沿领域之一。综述了近年来以胆甾 为构筑单元建造的人工受体在分子识别方面的研究进展。     

Complexity in molecular recognition

The anomer selectivity of artificial carbohydrate receptors was studied using in silico methods in order to shed light on the thermodynamic driving forces at work during molecular recognition in general. The contributions of relevant intermolecular hydrogen bonds were investigated by means of generalized compliance constants in order to dissect important from less important non-covalent interactions. Even at this moderately low rung on the ladder of complexity essential aspects of molecular recognition are not explainable in terms of additive intermolecular interactions. Though molecular recognition seems to be a complex and emergent property, a rationale for the diastereoselectivity of carbohydrate receptors was obtained by a combination of experimental data, free energy simulations and ab initio calculations.     

Modulated molecular recognition by a temperature‐sensitive molecularly‐imprinted polymer

Modulated molecular recognition was achieved in a temperature‐sensitive molecularly‐imprinted polymer. Using PNIPA as the temperature‐sensitive element, the adenine‐imprinted polymer (i.e., MIP‐S) was prepared and characterized. The MIP‐S exhibited a temperature‐responsive molecular recognition behavior because of the thermal phase‐transition within the MIP‐S network. Specifically, below the transition temperature (e.g., 20 °C), the MIP‐S showed a highly specific recognition for the imprint species (adenine). However, the MIP‐S did not show any significant resolution for the imprint species (adenine) and its analogue (1‐methyladenine) above the transition temperature (e.g., 40 °C). Such temperature‐regulated recognition is comparable to a switch‐on and switch‐off process, thereby making tunable molecular recognition feasible. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 2352–2360, 2009     

新的手性芳酰胺分子钳的微波干法合成

在微波辐射无溶剂条件下, 以1,3-二苯氧乙酸为隔离基, L-氨基酸甲酯为手臂设计合成了9个新的分子钳人工受体. 所有化合物的结构均经1H NMR, IR, MS及元素分析所确证. 同传统方法相比, 该法具有简单、快速、有效、对环境友好等优点. 初步的实验结果表明, 这类分子钳受体对D/L-氨基酸甲酯具有良好的对映选择性识别性能.     

Coupling a natural receptor protein with an artificial receptor to afford a semisynthetic fluorescent biosensor

An artificial receptor and a signal transducer have been engineered on a lectin (saccharide-binding protein) surface by a post-photoaffinity labeling modification method. Saccharide binding can be directly and selectively read out by the fluorescence changes of the fluorophore via photoinduced electron transfer (PET) mode. Fluorescence titration with various saccharides reveals that molecular recognition by the artificial receptor is successfully coupled to the native binding site of the lectin, producing a novel fluorescent saccharide biosensor showing modulated specificity and enhanced affinity. Designed cooperativity between artificial and native molecular recognition modules was quantitatively demonstrated by the comparison of the binding affinities, and it represents a new strategy in molecular recognition. By using appropriate artificial receptors and various native lectins, this approach may provide many new semisynthetic biosensors for saccharide derivatives such as glycolipids and glycopeptides/proteins. An extended library of lectin-based biosensors is envisioned to be useful for glycome research, a newly emerging field of the post-genomic era.     

Enhancing effect of phenylboronic acid compounds and their interactions with the diol groups of saccharides in a capillary electrophoresis-chemiluminescence detection system.

In our previous study, we proposed molecular recognition of mono- and disaccharides making use of the interaction between their diol groups and p-iodophenylboronic acid in capillary electrophoresis with a chemiluminescence detection system. Here, to extend our knowledge of molecular recognition, we first examined the enhancing effects of four phenylboronic acid compounds other than p-iodophenylboronic acid i.e., 4-biphenylboronic acid, 4-octyloxyphenyl-boronic acid, 3-octyloxyphenylboronic acid, and 4-dodecyloxyphenylboronic acid, for luminol-hydrogen peroxide-horseradish peroxidase reaction in the capillary electrophoresis-chemiluminescence detection system. Only 4-biphenylboronic acid showed an enhancing effect similar to that of p-iodophenylboronic acid; the effect was determined over the range of 0.5-10 microM in this system. Second, we estimated the apparent stability constants between the diol groups of saccharides (1-methyl-D-glucoside, D-saccharose, and D-fructose) and the boronic acid moieties of the two enhancers, p-iodophenylboronic acid and 4-biphenylboronic acid. The apparent binding constants obtained here provided insight to confirm the principle of molecular recognition for the saccharides examined here.     

Molecular recognition: from solution science to nano/materials technology

In the 25 years since its Nobel Prize in chemistry, supramolecular chemistry based on molecular recognition has been paid much attention in scientific and technological fields. Nanotechnology and the related areas seek breakthrough methods of nanofabrication based on rational organization through assembly of constituent molecules. Advanced biochemistry, medical applications, and environmental and energy technologies also depend on the importance of specific interactions between molecules. In those current fields, molecular recognition is now being re-evaluated. In this review, we re-examine current trends in molecular recognition from the viewpoint of the surrounding media, that is (i) the solution phase for development of basic science and molecular design advances; (ii) at nano/materials interfaces for emerging technologies and applications. The first section of this review includes molecular recognition frontiers, receptor design based on combinatorial approaches, organic capsule receptors, metallo-capsule receptors, helical receptors, dendrimer receptors, and the future design of receptor architectures. The following section summarizes topics related to molecular recognition at interfaces including fundamentals of molecular recognition, sensing and detection, structure formation, molecular machines, molecular recognition involving polymers and related materials, and molecular recognition processes in nanostructured materials.     

RECENT ADVANCES IN THE PREPARATION OF MOLECULARLY IMPRINTED POLYMERS VIA CONTROLLED RADICAL POLYMERIZATION TECHNIQUES

Molecular imprinting technique is a simple and efficient method for the preparation of polymer materials （i. e., molecularly imprinted polymers, MIPs） with tailor-made recognition sites for certain target molecules. The resulting MIPs have proven to be versatile synthetic receptors due to their high specific recognition ability, favorable mechanical, thermal and chemical stability, and ease of preparation. Recent years have witnessed significant progress in the synthesis and applications of MIPs. This review focus on the recent developments and advances in the preparation of MIPs via various controlled radical polymerization techniques.     

铀酰-Salophen受体对α, β-不饱和羰基化合物及手性客体的分子识别

基于密度泛函理论(DFT)的计算方法,研究了不对称铀酰-salophen受体对α, β-不饱和羰基化合物客体及手性小分子的分子识别。理论计算结果表明:配合物中受体的U原子与客体的O3原子配位,且受体与客体之间结合能随受体上芳环取代基的增大而增大; R₂, R₃-系列配合物中U―O3键的稳定性比R₁-系列的更强;配位后的α, β-不饱和羰基化合物中C＝C与C＝O之间的共轭效应减弱。而且,通过圆二色谱(CD)及结合能计算表明:芘基铀酰-salophen (受体3)对(R)-1-(2-萘基)乙胺的分子识别选择性优于(S)-1-(2-萘基)乙胺。因而,这些研究结果为不对称铀酰-salophens具有分子识别能力提供了新的信息。     

Directed molecular recognition: design and synthesis of neutral receptors for biotin to bind both its functional groups

The neutral receptors 1 and 2 are designed and synthesized for the recognition of biotin, a biologically significant molecule, in chloroform to bind completely both of its functional groups simultaneously, i.e., cyclic urea and the carboxyl groups. The truncated receptor 3 binds only the cyclic urea moiety.     

Anticalins versus antibodies: made-to-order binding proteins for small molecules

Engineering proteins to bind small molecules presents a challenge as daunting as drug discovery, for both hinge upon our understanding of receptor-ligand molecular recognition. However, powerful techniques from combinatorial molecular biology can be used to rapidly select artificial receptors. While traditionally researchers have relied upon antibody technologies as a source of new binding proteins, the lipocalin scaffold has recently emerged as an adaptable receptor for small molecule binding. 'Anticalins', engineered lipocalin variants, offer some advantages over traditional antibody technology and illuminate features of molecular recognition between receptors and small molecule ligands.     

Interactions with aromatic rings in chemical and biological recognition

Intermolecular interactions involving aromatic rings are key processes in both chemical and biological recognition. Their understanding is essential for rational drug design and lead optimization in medicinal chemistry. Different approaches-biological studies, molecular recognition studies with artificial receptors, crystallographic database mining, gas-phase studies, and theoretical calculations-are pursued to generate a profound understanding of the structural and energetic parameters of individual recognition modes involving aromatic rings. This review attempts to combine and summarize the knowledge gained from these investigations. The review focuses mainly on examples with biological relevance since one of its aims it to enhance the knowledge of molecular recognition forces that is essential for drug development.     

Cooperation between artificial receptors and supramolecular hydrogels for sensing and discriminating phosphate derivatives

This study has successfully demonstrated that the cooperative action of artificial receptors with semi-wet supramolecular hydrogels may produce a unique and efficient molecular recognition device not only for the simple sensing of phosphate derivatives, but also for discriminating among phosphate derivatives. We directly observed by confocal laser scanning microscopy that fluorescent artificial receptors can dynamically change the location between the aqueous cavity and the hydrophobic fibers upon guest-binding under semi-wet conditions provided by the supramolecular hydrogel. On the basis of such a guest-dependent dynamic redistribution of the receptor molecules, a sophisticated means for molecular recognition of phosphate derivatives can be rationally designed in the hydrogel matrix. That is, the elaborate utilization of the hydrophobic fibrous domains, as well as the water-rich hydrophilic cavities, enables us to establish three distinct signal transduction modes for phosphate sensing: the use of (i) a photoinduced electron transfer type of chemosensor, (ii) an environmentally sensitive probe, and (iii) an artificial receptor displaying a fluorescence resonance energy transfer type of fluorescent signal change. Thus, one can selectively sense and discriminate the various phosphate derivatives, such as phosphate, phospho-tyrosine, phenyl phosphate, and adenosine triphosphate, using a fluorescence wavelength shift and a seesaw type of ratiometric fluorescence change, as well as a simple fluorescence intensity change. It is also shown that an array of the miniaturized hydrogel is promising for the rapid and high-throughput sensing of these phosphate derivatives.