Salicylaldehyde hydrazones as fluorescent probes for zinc ion in aqueous solution of physiological pH

Salicylaldehyde hydrazones of 1 and 2 were synthesized and their potential as fluorescent probes for zinc ion was investigated in this paper. Both of the probes were found to show fluorescence change upon binding with Zn²⁺ in aqueous solutions, with good selectivity to Zn²⁺ over other metal ions such as alkali/alkali earth metal ions and heavy metal ions of Pb²⁺, Cd²⁺ and Hg²⁺. They showed 1:2 metal-to-ligand ratio when their Zn²⁺ complex was formed. By introducing pyrene as fluorophore, 2 showed interesting ratiometric response to Zn²⁺. Under optimal condition, 2 exhibited a linear range of 0-5.0 μM and detection limit of 0.08 μM Zn²⁺ in aqueous buffer, respectively. The detection of Zn²⁺ in drinking water samples using 2 as fluorescent probe was successful.     

Triphenylmethane dyes as fluorescent probes for G-quadruplex recognition

Triphenylmethane (TPM) dyes normally render rather weak fluorescence due to easy vibrational deexcitation. However, when they stack onto the two external G-quartets of a G-quadruplex (especially intramolecular G-quadruplex), such vibrations will be restricted, resulting in greatly enhanced fluorescence intensities. Thus, TPM dyes may be developed as sensitive G-quadruplex fluorescent probes. Here, fluorescence spectra and energy transfer spectra of five TPM dyes in the presence of G-quadruplexes, single- or double-stranded DNAs were compared. The results show that the fluorescence spectra of four TPM dyes can be used to discriminate intramolecular G-quadruplexes from intermolecular G-quadruplexes, single- and double-stranded DNAs. The energy transfer fluorescence spectra and energy transfer fluorescence titration can be used to distinguish G-quadruplexes (including intramolecular and intermolecular G-quadruplexes) from single- and double-stranded DNAs. Positive charges and substituent size in TPM dyes may be two important factors in influencing the binding stability of the dyes and G-quadruplexes.     

Water-soluble homo-oligonucleotide stabilized fluorescent silver nanoclusters as fluorescent probes for mercury ion

Water–soluble fluorescent silver nanoclusters (Ag NCs) were prepared with the assistance of commercially available polyinosinic acid (PI) or polycytidylic acid (PC). The fluorescence of the Ag NCs is effectively quenched by trace mercury(II) ions, which can be applied for their detection. The response of the Ag NCs prepared with PI to Hg(II) ion is linear in the Hg(II) concentration range from 0.05 to 1.0 μM (R²?=?0.9873), and from 0.5 to 10 μM of Hg(II) (R²?=?0.9971) for Ag NCs prepared with PC. The detection limits are 3.0 nM and 9.0 nM (at an S/N of 3), respectively. The method is simple, sensitive and fairly selective.

Quinolizinium salts as fluorescent probes for N-nucleophiles

Quinolizinium salts are effective fluorescent reagents for the detection of amines. A series of carbamylquinolizinium salts was synthesized to take advantage of the influence of the carbamyl group on the fluorescence of the heterocyclic aromatic system. The native fluorescence of carbamylquinolizinium derivatives is described. The polycyclic compounds exhibit intense fluorescence which can be measured for 10^?10?10^?11 M solutions. With the diphenyl derivatives, it is not possible to establish correlations between the Hammett parameters from different substituents and the fluorescence emission. The fluorescence of reaction products with piperidine is described; the emission intensity observed is highest for the polycyclic quinolizinium derivatives, which can be considered as the most appropriate for the detection of amines.     

Glucose oxidase-functionalized fluorescent gold nanoclusters as probes for glucose

Creation and application of noble metal nanoclusters have received continuous attention. By integrating enzyme activity and fluorescence for potential applications, enzyme-capped metal clusters are more desirable. This work demonstrated a glucose oxidase (an enzyme for glucose)-functionalized gold cluster as probe for glucose. Under physiological conditions, such bioconjugate was successfully prepared by an etching reaction, where tetrakis (hydroxylmethyl) phosphonium-protected gold nanoparticle and thioctic acid-modified glucose oxidase were used as precursor and etchant, respectively. These bioconjugates showed unique fluorescence spectra (λ_{em max} = 650 nm, λ_{ex max} = 507 nm) with an acceptable quantum yield (ca. 7%). Moreover, the conjugated glucose oxidase remained active and catalyzed reaction of glucose and dissolved O₂ to produce H₂O₂, which quenched quantitatively the fluorescence of gold clusters and laid a foundation of glucose detection. A linear range of 2.0 × 10⁻⁶–140 × 10⁻⁶ M and a detection limit of 0.7 × 10⁻⁶ M (S/N = 3) were obtained. Also, another horseradish peroxidase/gold cluster bioconjugate was produced by such general synthesis method. Such enzyme/metal cluster bioconjugates represented a promising class of biosensors for biologically important targets in organelles or cells.     

Bioconjugated quantum dots as fluorescent probes for bioanalytical applications

Quantum dots (QDs) are inorganic semiconductor nanocrystals that have unique optoelectronic properties responsible for bringing together multidisciplinary research to impel their potential bioanalytical applications. In recent years, the many remarkable optical properties of QDs have been combined with the ability to make them increasingly biocompatible and specific to the target. With this great development, QDs hold particular promise as the next generation of fluorescent probes. This review describes the developments in functionalizing QDs making use of different bioconjugation and capping approaches. The progress offered by QDs is evidenced by examples on QD-based biosensing, biolabeling, and delivery of therapeutic agents. In the near future, QD technology still faces some challenges towards the envisioned broad bioanalytical purposes.      

Polarity-active NIR probes with strong two-photon absorption and ultrahigh binding affinity of insulin amyloid fibrils

Amyloid fibrils are associated with many neurodegenerative diseases. In situ and in vivo visualization of amyloid fibrils is important for medical diagnostics and requires fluorescent probes with both excitation and emission wavelengths in the far-red and NIR region, and simultaneously with high binding-affinity to amyloid fibrils and the ability to cross the blood–brain barrier, which, however, remain a challenge. Here, we rationally design and synthesize an excellent polarity-sensitive two-photon excited NIR fluorophore (TZPI) based on a donor (D)–acceptor (A)-ion compound. The electron-rich carbazole group and the ionic pyridinium bromide group, linked by an electron-poor π-conjugated benzothiadiazole group, ensure strong near infrared (NIR) emission. Furthermore, the lipophilic carbazole together with the benzothiadiazole group facilitates docking of the probe in the hydrophobic domains of amyloid aggregates with the dissociation constant K_d = 20 nM and 13.5-fold higher binding affinity to insulin fibrils than the commercial probe ThT. On association with the amyloid fibrils, the tiny decrease in polarity leads to a large increase in its NIR emission intensity with an on–off ratio > 10; meanwhile, the TZPI probe exhibits a quantum yield of up to 30% and two-photon absorption cross-section values of up to 467.6 GM at 890 nm. Moreover, the application of TZPI in two-photon imaging is investigated. The ultrahigh binding affinity, the strong NIR emission, the good two-photon absorption properties, the high photo-stability, the appropriate molecular mass of 569 Da and the lipophilicity with log P = 1.66 ± 0.1 to cross the BBB make TZPI promising as an ideal candidate for detecting amyloid plaques in vivo.

A polarity-active NIR probe based on the transformation from the CT state to the LE state for two-photon imaging of amyloid fibrils.     

Cytochrome display on amyloid fibrils

Protein amyloid fibrils can be functionalized by coating the core protofilament with high concentrations of proteins and enzymes. This can be done elegantly by appending a functional domain to an amyloidogenic protein monomer, then assembling the monomers into a fibril. To display an array of biologically functional porphyrins on the surface of protein fibrils, we have fused the sequence of the small, soluble cytochrome b562 to an SH3 dimer sequence that can form classical amyloid fibrils rapidly under well-defined conditions. The resulting fusion protein also forms amyloid fibrils and, in addition, binds metalloporphyrins, at half of the porphyrin binding sites as shown by UV-vis and NMR spectroscopies. Once metalloporphyrins are bound to the fibrils, the resulting holo-cytochrome domains are spectroscopically identical to the wild type cytochrome. The concentration of metalloporphyrins on a saturated fibril is estimated to be of the order of approximately 20 mM, suggesting that they could be interesting systems for applications in nanotechnology.     

Light-triggered disassembly of amyloid fibrils

There is growing demand for novel methods that could render the controlled disassembly of higher-order structures formed, for example, by peptides. Herein, we demonstrate such a method based on the application of a photocaged variant of the amino acid lysine, namely, lys(Nvoc). Specifically, we introduce lys(Nvoc) into the primary sequence of the amyloidogenic peptide, Aβ(16-22), at a position where the native side chain is known to play a key role in fibril formation via hydrophobic interactions. Both AFM and infrared spectroscopic measurements indicate that the resultant Aβ(16-22) mutant is able to form fibrils whereas, more importantly, the fibrils thus formed can be completely disassembled upon irradiation with near-UV light, which cleaves the photolabile Nvoc moiety and triggers the restoration of the lysine side chain. These results suggest that the generation of a single charge in a highly hydrophobic region of the fibrils is sufficient to promote their dissociation. Thus, we envisage that the current approach will find useful applications wherein controlled structural disassembly or content release is required.     

Donor-and-acceptor substituted truxenes as multifunctional fluorescent probes

A series of dimesitylboryl acceptor (mesityl=2,4,6-trimethylphenyl) and/or diphenylamino donor (-N(Ph)2)-substituted truxene derivatives, classified as D-or-A substituted compounds and D-and-A substituted charge-transfer compounds, have been synthesized. Two D-and-A substituted truxene compounds, namely, 2-dimesitylboryl-7,12-di(N,N-diphenylamino)-5,5',10,10',15,15'-hexaethyltruxene (BN2) and 2,7-di(dimesitylboryl)-12-(N,N-diphenylamino)-5,5',10,10',15,15'-hexaethyltruxene (B2N), exhibit extraordinarily large solvatochromism ranging from 420 nm (in hexane) to 580 nm (in acetonitrile) in aprotic solvents, which can be used to probe the polarity of the solution environment. Due to proton-donor interactions, the solvatochromic red shift of BN2 and B2N in protic solvents has been significantly decreased, and this effect can be used to identify local protic and aprotic environment. Furthermore, because of the interaction between F- and acceptor, BN2 and B2N show sharp spectral response to fluoride ion concentration. The simultaneous "turn-off" at 500 nm and "turn-on" at 380 nm of the fluorescence signal have provided a good example of a fluorescent ratiometric method, which can greatly enhance the sensitivity of the fluoride ion probe. Underlying these interesting spectral phenomena and multifunctional probe properties is the charge-transfer strategy of grafting donor and acceptor moieties, as A-pi-D2 or A2-pi-D style, to the triangular truxene.     

BODIPY-based hydroxyaryl derivatives as fluorescent pH probes

[structures: see text] Seven new 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene (BODIPY) dyes with phenolic or naphtholic subunits on position 8 and with substituents having different electron driving forces on positions 3 and 5 were synthesized. Their absorption and steady-state fluorescence properties were investigated as a function of solvent. The novel compounds, with the exception of 4,4-difluoro-8-(4-hydroxyphenyl)-3,5-bis-(4-methoxyphenyl)-4-bora-3a,4a-diaza-s-indacene, are characterized by absorption maxima in the range 493-515 nm and small (400-600 cm(-1)) Stokes shifts. The exceptional dye has absorption maxima in the 570-580 nm region and fluorescence emission maxima around 610-620 nm, depending on the solvent. In aqueous solution, the dyes show a large fluorescent enhancement upon increasing the acidity of the solution. They can be used in aqueous solution as fluorescent pH probes excitable with visible light, with pKa values ranging from 7.5 to 9.3, depending on the substitution pattern on positions 3, 5, and 8.     

Small molecule fluorescent probes for the detection of amyloid self-assembly in vitro and in vivo

The misfolding and aggregation of amyloidogenic polypeptides are characteristics of many neurodegenerative syndromes including Alzheimer's and Parkinson's disease. There is a major interest in the availability of amyloid-specific probes that exhibit fluorescence properties, for its use as reporters of protein aggregation in spectroscopy and microscopy methodologies. In this review, we intend to provide an overview of novel fluorescence-based probes and procedures applied for addressing fundamental aspects of amyloid self-assembly in vitro and in vivo. We highlight the utilization in vitro of several small-molecule fluorescent probes as extrinsic and site-specific reporters of amyloid formation, including single-molecule determinations. Detection of amyloid self-assembly employing compounds such as JC-1, DCVJ, ANS derivatives and luminescent conjugated polymers, as well as site-specific probes such as pyrene and ESIPT is discussed. We further review novel fluorescent probes developed for the non-invasive optical imaging of protein aggregates in vivo, including BTA-1, Methoxy-X04, NIAD-4 and CRANAD-2. Availability of increasingly versatile amyloid-specific fluorescent probes is having a very positive impact in the drug discovery and diagnostics fields.     

Mesoscopic properties of semiflexible amyloid fibrils

We have determined the contour length, persistence length, bending rigidity, and critical percolation concentration for semiflexible amyloid fibrils formed from the globular proteins beta-lactoglobulin, bovine serum albumin, and ovalbumin. The persistence length was estimated using an adjusted random contact model for highly charged semiflexible chains. We have found contour lengths in the range of 50 nm to 10 microm and persistence lengths in the range of 16 nm to 1.6 microm. This wide range of contour and persistence lengths and the ease of preparation of these amyloid fibrils make them ideal model systems for the study of semiflexible polymers.     

Coumarin-based symmetrical bisamide as fluorescent and colorimetric probes for copper ions

Coumarin-based new symmetrical bisamide 1 has been designed and synthesised. The bisamide 1 fluorometrically recognises Cu²⁺ in CH₃CN containing 0.06% DMSO by exhibiting an increase in emission upon complexation. In comparison, the isomeric structure 2 also reports the selectivity for Cu²⁺ under identical condition by showing an opposite mode of emission. In addition, Cu²⁺ gives rise to a change in colour of the solution of 1, which is clearly visible to the naked eye.     

氨肽酶N荧光探针的研究进展

氨肽酶N(aminopeptidase N,APN)是一种外肽酶,广泛存在于哺乳动物体内,可从蛋白质多肽链的N末端水解中性或碱性氨基酸,在人体中具有多种重要的生理功能。APN可作为癌症诊断的标志物,尿液中APN也可作为肾小球肾炎的早期生物标志物。本文综述了APN荧光探针的研究进展,主要包括亲和力型APN荧光探针和反应型APN荧光探针,并对它们的优缺点进行了比较;最后对APN荧光探针的发展前景进行了展望。     

New fluorescent probes for carbonic anhydrases

We report the synthesis and fluorescence properties of naphthalenesulfonamide derivatives as active site probes for carbonic anhydrases.     

Homodimeric monomethine cyanine dyes as fluorescent probes of biopolymers

The fluorescence properties of newly synthesized homodimeric monomethine cyanine dyes in the presence of biopolymers are investigated. They do not fluoresce in TE buffer and bidistilled water but become strongly fluorescent (Q(F)=0.3-0.9) in the region 530-650 nm when bound to dsDNA and ssDNA. The detection limit of dsDNA is about 1.7 ng/ml. Some of dyes studied are able to distinguish between dsDNA and ssDNA, RNA, BSA in solution and gel electrophoresis. The influence of different factors (temperature, pH and viscosity of the medium, presence of histone) on the formation of the dye-biopolymer complexes is investigated. The results of steady-state and dynamic fluorescence measurements concerning the different types of binding between dyes and biopolymers show that the new dyes are applicable in molecular biology as highly sensitive fluorescence labels.