Scanning a triple quadrupole mass spectrometer for doubly charged ions

Charge exchange reactions within a triple quadrupole mass spectrometer characterize doubly charged ions formed in the ion source. Two methods have been developed for identifying the singly charged ions formed from doubly charged ions by charge exchange in the collision quadrupole. The first is based on the characteristically high kinetic energy-to-charge ratios of the products of charge exchange; this property can be used to separate these ions from all other singly charged ions. This retarding potential method is analogous to procedures for recording doubly charged ion mass spectra using sector instruments. The second method is based on the fact that, although mass remains constant in the charge exchange reaction, the change in mass-to-charge ratio can be followed. A charge exchange linked scan, predicated on changes in charge rather than mass, but otherwise analogous to neutral loss/gain scans, is described. Information on the structure of doubly charged ions can be obtained by recording the fragmentation products of dissociative charge exchange. The utility of the charge exchange linked scan for the selective identification of polynuclear aromatic compounds in a complex mixture is described. The methods given can be generalized to cover other charge permutation reactions.     

Alfred Nier and the sector field mass spectrometer

Science and technology are intimately related, and advances in science often become possible with the availability of new instrumentation. This has certainly been the case in mass spectrometry, which is used in so many scientific disciplines. Originally developed as an instrument for research in physics it was used in the discovery of isotopes, their recognition as the fundamental species comprising the elements, and the investigation of elemental isotopic composition. Isotope ratio mass spectrometry is a metrological technique of the highest order, and has been widely used in chemical, biochemical, cosmochemical, environmental, geological, physical, and nuclear research. Mass spectrometry presently plays a key role not only in scientific research, but also in industrial operations. This paper highlights the role that Alfred Otto Carl Nier played in bringing mass spectrometry into the mainstream of science. Nier's career spanned a remarkable period in science, and he made crucial contributions to atomic weights, geochronology, isotope geochemistry, nuclear physics, and space science. He is widely viewed as the 'father of modern mass spectrometry', because of his genius with instrumentation, his innovations, and the generosity with which he shared his ideas and designs. It is timely to remember his fundamental work in mass spectrometry, particularly the development of the sector field mass spectrometer, which is still the instrument of choice for many isotope scientists some 66 years after its first appearance in 1940.     

Collision induced dissociations of radical cations

The collision induced dissociation spectra of ions generated by ionization or fragmentation of various samples reveal at least five non-decomposing structures. In contrast, the kinetic energy release measurements for the loss of carbon monoxide from the metastable ions are in agreement with the occurrence of a common reactive species. Isomerization into an ‘α,β-unsaturated aldehyde-like’ structure prior to fragmentation is proposed to accommodate these collision induced dissociation and mass analysed ion kinetic energy data. Some resuts suggest also that carbon monoxide loss from the phenol molecular ion may not occur via the cyclohexadienone tautomer.     

Collision of molecular anions of benzenedicarboxylic esters with oxygen in a triple quadrupole mass spectrometer

A series of symmetrical phthalate, isophthalate, and terephthalate ester molecular anions were reacted with oxygen in the collision cell of a triple quadrupole mass spectrometer to produce characteristic [M − R]⁻ fragments that can be used to identify these compounds. The [M − R]⁻/M^−· intensity ratios decreased for homologous esters in the following order: phthalates > isophthalates terephthalates. Based on the [M − R]⁻ ion intensities for different alkyl substituents, on ¹⁸O₂ labeling experiments, and on the reactivity of bis(t-butylcyclohexyl)phthalates, it was concluded that M − R anions are generated through an S_N2 nucleophilic displacement at the alpha carbon of the saturated alkyl substituent. For the phenyl ester, the reaction proceeds through attack at the carbonyl carbon.     

Conformer selection of protein ions by ion mobility in a triple quadrupole mass spectrometer

Electrospray mass spectra of multiply charged protein molecules show two distinct charge state distributions proposed to correspond to a more highly charged, open conformational form and a lower charged, folded form. Elastic collisions carried out in the radiofrequency-only collision cell of a triple quadrupole mass spectrometer have dramatic effects on the appearance of the mass spectra. The different cross sectional areas of the conformers allow preferential selection of one charge state distribution over the other on the basis of ion mobility. Preferential selection is dependent on the nature and pressure of the target gas as well as the nature of the protein. In the case of positively charged horse heart apomyoglobin (MW 16,951 da), a high charge state distribution centered around (M + 20H)²⁰⁺ predominates at low target gas pressures and a second distribution centered around (M + 10H)¹⁰⁺ predominates at high target gas pressures. Bimodal distributions are observed at intermediate pressures and, remarkably, charge states between the two distributions are not effectively populated under most of the conditions examined. Hard sphere collision calculations show large differences in collision frequencies and in the corresponding kinetic energy losses for the two conformational states and they demonstrate that the observed charge state selectivity can be explained through elastic collisions.     

Uranium isotopic analyses by using a sector field inductively coupled plasma mass spectrometer

A sector field mass spectrometer using an inductively coupled plasma as an ion source was used in order to determine the uranium isotopic ratios in reference materials supplied by the National Institute of Standards and Technology (NIST) (NBS 950, 010, 030, 200, 500, 750, and 970). The accuracy obtained for the major isotopes was better than 0.2%.     

碳氮二元簇离子的激光产生与碰撞诱导解离研究

以脉冲激光束在高真空中溅射铁氰化钾,产生了各种组成的碳氮原子簇负离子,记录了它们的飞行时间质谱。根据这些簇离子的碰撞诱导解离研究结果,推测了它们的结构,发现它们大都具有超共轭的稳定体系,它们的构型随成簇氮原子数的增加,从一维直链向二维芳环转化。     

A new tandem mass spectrometer for the study of molecular dissociations

A new tandem mass spectrometer has been developed for the study of molecular fragmentation reactions. The first stage of this tandem mass spectrometer is a double-focusing sector field instrument in the BE configuration. The second stage is a double-focusing combination of a Wien filter and a sector magnet that allows simultaneous detection of a wide range of masses owing to the approximately equal velocities of the fragment ions. By using a microchannel plate as a collision target, high fragmentation effi.ciency and high ion transmission were achieved.     

Dissociation and rearrangement of molecular ions of acetals in the field mass spectrometer

Theoretical and Experimental Chemistry -     

Non-thermal internal energy distribution of ions observed in an electrospray source interfaced with a sector mass spectrometer

The internal energy distribution P(E(int)) of ions emitted in an electrospray (ESI) source interfaced with a sector mass spectrometer is evaluated by using the experimental survival yield (SY) method including the kinetic shift. This method is based on the relationship between the degree of fragmentation of an ion and its amount of internal energy and uses benzylpyridinium cations due to their simple fragmentation scheme. Quantum chemical calculations are performed, namely at G3(MP2)//B3LYP and QCISD/MP2 levels of theory. The results show that the internal energy distribution of the ions emitted in the ESI source interfaced with a sector analyzer is very narrow. The MassKinetics software is used to confirm these observations. The P(E(int)) is the parameter that allows to fit the experimental SY of each substituted benzylpyridinium cation with theoretical mass spectra generated by the MassKinetics software. The resulting internal energy distributions are similar to the ones obtained with the experimental SY method. This indicates that in the present experimental conditions, P(E(int)) cannot be compared with a 'thermal-like' Boltzmann distribution. In addition, it appears that with the sector analyzer, increasing the collision energy in the first pumping stage of the ESI source does not correspond to a warm-up of the produced ions.     

Sulphonium ions: Collision-activated dissociation using fast atom bombardment ionization and a triple quadrupole mass spectrometer

The low-energy collision-activated dissociation of sulphonium cations, including symmetrical trialkyl R³S⁺, dimethylalkyl (CH₃)₂RS⁺, diphenylalkyl Ph₂RS⁺ and cyclic (CH₂)_nS⁺R, has been recorded using fast atom bombardment ionization and a triple quadrupole mass spectrometer. The general trends are easy loss of sulphide to give [R]⁺, except for R ? CH₃, and loss of alkene to give protonated sulphide if β-hydrogens are available. Loss of alkane, generally found in ammonium compounds, is not observed.     

Modification of a double focusing mass spectrometer for the observation of metastable ions decaying in two field-free regions

The occurrence of ‘metastable’ ions formed in the ion source as one species decays to a lower mass ion prior to mass analysis provides direct evidence for dissociation mechanisms in organic mass spectra. Both unimolecular and collision-induced decay processes provide useful information on available dissociation pathways, ion structures, and energetics. In double-focusing mass spectrom-eters the existence of two field-free regions presents a convenient vehicle for studying these processes and for obtaining kinetic information on consecutive metastables through simple modification in circuitry and operating conditions. These modifications are described and the method is used to demonstrate consecutive metastable decay processes in acetyl acetone, 1-butene, toluene and alumin-um hexafluoroacetylacetonate. Drift tube pressure studies showed that, within experimental error, consecutive metastables observed in acetyl acetone and 1-butene were collision-induced, while toluene and the aluminum chelate both exhibit two-step unimolecular decays.     

High resolution measurements of kinetic energy release distributions of neon, argon, and krypton cluster ions using a three sector field mass spectrometer

Using a newly constructed three sector field mass spectrometer (resulting in a BE1E2 field configuration) we have measured the kinetic energy release distributions of neon, argon, and krypton cluster ions. In the present study we used the first two sectors, B and E1, constituting a high resolution mass spectrometer, to select the parent ions in terms of mass, charge, and energy, and studied the decay of those ions in the third field free region. Due to the improved mass resolution we were able to extend earlier studies carried out with a two sector field machine, where an upper size limit arose from the fact that several isotopomers contribute to a decaying parent ion beam when the cluster size exceeds a certain value. Furthermore we developed a new data analysis. It allows us to model also fragment ion peaks that are a superposition of different decay reactions and thus we can determine the average kinetic energy release for all decay reactions of a given cluster ion. In a further step we used these results to determine the binding energies of cluster ions Rg(n) (n> or =10) by applying finite heat bath theory. The smaller sizes have not been included in this analysis, because the validity of finite heat bath theory becomes questionable below n approximately 10. The present average kinetic energy releases and binding energies are compared with other experiments and various calculations.     

Factors determining the performance of triple quadrupole, quadrupole ion trap and sector field mass spectrometer in electrospray ionization mass spectrometry. 2. Suitability for de novo sequencing

The sequence coverage by fragment ions resulting from collision-induced dissociation in a triple stage quadrupole (TSQ) and a quadrupole ion trap (QIT) mass spectrometer of 10-20-mer oligonucleotides was investigated. While (a-B) and w ion series were the most abundant on both instruments, additional ion series of sequence relevance were preferably formed in the TSQ. Thus, a total number of 83 fragment ions were used to deduce the complete sequence of a 10-mer oligonucleotide of mixed sequence from a tandem mass spectrum recorded on the TSQ. The complete sequence was also encoded in the 28 fragments that were obtained from the QIT under comparable fragmentation conditions. Spectrum complexity increased considerably at the cost of signal-to-noise ratio upon fragmentation of a 20-mer oligonucleotide in the TSQ, whereas spectrum interpretation with longer oligonucleotides was significantly more straightforward in spectra recorded on the QIT. The extent of fragmentation had to be optimized by appropriate setting of collision energy and choice of precursor ion charge state in order to obtain full sequence coverage by fragments for de novo sequencing. Moreover, full sequence information was also dependent on base sequence because of the low tendency of backbone cleavage at thymidines. Tandem mass spectrometry on the QIT yielded redundant information that was successfully utilized to deduce the complete sequence of 20-mer oligonucleotides with high confidence.     

Energy-resolved collisional activation of dimethyl phosphonate and dimethyl phosphite ions in a quadrupole ion trap and a triple quadrupole mass spectrometer

Collision-activated dissociation spectra of dimethyl phosphonate and dimethyl phosphite ions were measured as a function of the amplitude of a supplementary AC voltage applied across the end-caps of an ion-trap mass spectrometer. These spectra yield breakdown graphs which bear a close resemblance to those obtained by varying collision energy in a triple-quadrupole mass spectrometer operating under multiple-collision conditions. Variation in the time of excitation at the resonance frequency provides an alternative route to breakdown graphs. The results demonstrate that energy deposition occurs via multiple activating collisions in the ion trap. Maximum energy deposition observed is somewhat smaller under normal operating conditions in the ion trap than in the triple-quadrupole mass spectrometer.     

Collision induced dissociation in a flowing afterglow-tandem mass spectrometer for the selective detection of C5 unsaturated alcohols and isoprene

A flowing afterglow-tandem mass spectrometer (FA-TMS) was used to study a series of C₅ unsaturated alcohols and isoprene. The analytical procedure was validated through collision induced dissociation (CID) experiments on proton hydrates. In the FA, reagent H₃O⁺ ions were used to chemically ionize the alcohols under study and isoprene. Chemical ionization (CI) by H₃O⁺ is widely used, especially in PTR-MS instruments, and produces a main peak at m/z 69 for all studied compounds, implying the impossibility to distinguish them by a simple quadrupole mass filter. The CID of these ions at m/z 69 resulted in daughter ions with the same masses but with different intensities depending on the organic compound, the collision energy and the Ar target gas pressure in the collision cell. From these observations, pentenols were easily distinguished from methylbutenols and 3-methyl-3-buten-1-ol from the other compounds. CID experiments were also performed on the protonated alcohol, which is only a stable ion for 1-penten-3-ol, 2-methyl-3-buten-2-ol and 3-methyl-3-buten-1-ol, showing different CID patterns as a function of the collision energy. The coupling between a FA reactor and a TMS has proven to be a valuable approach to identify C₅ unsaturated alcohols and isoprene.