Studies on the mass spectra of 6-methylthiopurine and its C-and N-methyl derivatives

6-Methylthiopurines which bear a 9-NH- or a 9-NCH₃-group (class A) form an [M—1]-ion with much higher abundance than do the 1-, 3-, or 7-methyl derivatives (class B). The higher stability of the [M—1]-ion in class A may be explained by ring closure to N-7. Methyl radicals are cleaved from N-, but not from S- or C-methyl groups, with the exception of the 7-methyl derivative, in which the S-CH₃-group can also split off a methyl radical. The methylthio group may lose all of the following fragments: S, SH, SCH, SCH₂ and SCH₃. In the remaining purine skeleton, in general first the pyrimidine and subsequently the imidazole ring breaks down with elimination of HCN.     

Mass spectrometry of cycloheptatriene derivatives—II: Ring contraction of the molecular ion of 7-cyanocycloheptatriene. Participation of ring carbon in the loss of HCN (or HNC)

At an electron energy of 70 eV (nominal) both the [M]⁺·-ion and the [M? H]⁺-ion of the title compound expel hydrogen cyanide. ¹³C labelling in the cyano group shows that these ions lose—within experimental error—only H¹³CN when decomposing in the ion source, i.e. when possessing a relatively high internal energy. In the first and second field free region, however, as well as in the ion source at low ionizing energies (9 eV, nominal), H¹²CN is also eliminated. This phenomenon may be explained by ring contraction of the molecular ion to a six membered ring, possibly initiated by the formation of a norcaradiene structure, which may then rearrange further to a species of higher symmetry. This ring contraction is supported by the occurrence of peaks of low intensity at m/e 78 and m/e 77, due to fragments which are generated in one step from the molecular ion.     

New nitrogen heterocycles containing a ferrocene fragment: Optical and physicochemical properties

New thermally stable 2,4,6-trisubstituted pyrimidines containing aromatic (ferrocene and para-substituted benzene) fragments at the C⁴ and C⁶ positions and an amino group or pyrrole ring at the C² positions of the pyrimidine ring have been synthesized, and their optical and electrochemical properties have been studied. The redox potentials of the ferrocene fragments therein have been determined by cyclic voltammetry.     

N6‐Furfuryladenine (kinetin) hydrochloride

In the title compound, N⁶‐furfuryl­adenin‐3‐ium chloride, C₁₀H₁₀N₅O⁺·Cl⁻, the adenine moiety exists as the N3‐protonated N7–H tautomer. The orientation of the N6 substituent (furfuryl moiety) is distal to the imidazole ring of the adenine base. The dihedral angle between the adenine plane and the furfuryl ring plane is 76.1 (2)°. Three N—H⋯Cl hydrogen bonds are responsible for the formation of a supramolecular chain‐like pattern. These supramolecular chains are interconnected by C—H⋯Cl hydrogen bonds to form a hydrogen‐bonded sheet and a three‐dimensional hydrogen‐bonded network.     

A study of metal chelation of dinucleotide analogs in the gas phase by fast-atom bombardment mass spectrometry

Fast-atom bombardment (FAB) mass spectrometry was used to investigate the interaction of proton and alkali metal ions with dinucleotide analogs such as T-n-T (T = thymine moiety, n = polyether chain, e.g., triethylene, tetraethylene, pentaethylene, and hexaethylene ether 1–4), A-n-T (A = adenine unit 5–8), and T-n-OMe (9–12) in 3-nitrobenzyl alcohol matrix. The [M + H]⁺ ion is the most abundant ion for the A-n-T series, whereas in 1–4 and 9–12 the (TC₂H₄)⁺ ion is the most abundant. Formation of [M + H -C₂H₄O]⁺ ions, a characteristic fragmentation of crown ethers under electron ionization, is observed for compounds 1–12 and is more pronounced in 6 and 7. An abundant [M ? H]^? ion is observed for all the compounds studied under negative ion FAB due to the presence of the (-CO-NH-CO-) group of thymine, an indication of existence of intramolecular H bonding. The FAB mass spectra of 1–12 with alkali metal ions (Li⁺, Na⁺, K⁺, Rb⁺, and Cs⁺) showed formation of abundant metal-coordinated ions ([M + Met]⁺ and [TC₂H₄ + Met]⁺). Compounds 3, 4, 6, 7, and 10–12 showed ions due to the substitution of the thymine moiety by a hydroxyl group ([M + Met ? 108]⁺, Met = metal ion). For compound 3 alone, substitution of two thymine groups ([M + Met - 216]⁺) was observed. Metastable ion studies were used to elucidate the structures of these potentially significant ions, and the ion formule were confirmed with high resolution measurements. Selectivity toward metal complexation with ligand size was seen in the T-n-T and A-n-T series and was even more pronounced in A-n-T series. These dinucleotide analogs fall in the following order of chelation of alkali metal ions, acyclic glymes < dinucleotide analogs (acyclic glymes substituted with nitrogen bases) < crown ethers, which places them in perspective as receptor models.     

Sequential ortho effects: characterization of novel [M - 35]+ fragment ions in the mass spectra of 2-alkyl-4, 6-dinitrophenols

High-resolution mass spectrometry (HRMS), hybrid tandem mass spectrometry (MS/MS) (EBqQ), and photoelectron-photoion coincidence (PEPICO) experiments were conducted to examine a possible ortho-ortho effect resulting in a novel [M - 35]⁺ fragment ion in 2-alkyl-4, 6-dinitrophenols. For compounds having ethyl or larger alkyl substituents, [M35]⁺ was observed only when [M - 18]⁺ ions were present, with the ortho nitro group being involved in the reaction to [M- 35]⁺. For [M - 18]⁺ and [M - 35]⁺, HRMS results were consistent with losses of H₂O and H₂O + OH, respectively, whereas MS/MS results indicated a sequential reaction due to metastable dissociations. The appearance energy determined by PEPICO for [M - 35]⁺ was found to be greater than the appearance energy for [M - 18]⁺, thus supporting a sequential reaction. 69–75).     

Stereochemisch kontrollierte Cope-analoge Zerfallsprozesse von Sulfinylverbindungen im Massenspektrometer

The extent of elimination of HX (X = SOCH₃, SCH₃) from the [M? STol]⁺ as well as [MH? HSTol]⁺ cations (Tol = CH₃C₆H₄) from 2-sulfinyl substituted cyclopentane thiocarbonic acid S-aryl esters under electron impact and chemical ionization is strongly influenced by the stereochemical relationship of the vicinal substituents.     

(m‐CH3C6H4NH3)6P6O18

In hexakis(m‐toluidinium) cyclo­hexaphosphate, 6C₇H₁₀N⁺·­P₆O₁₈^6?, the atomic arrangement is typical of a layer structure. Layers including the centrosymmetric P₆O₁₈ ring anions develop around the (100) planes at x = . The hydrogen‐bond distribution is described.     

Mass spectrometric study of 4-azafluorenes

The dissociative ionization of 4-azafluorene and its methyl and phenyl derivatives was investigated. The relative intensity of the [M — CH₃]⁺ ion peak depends on the position of the CH₃ group in the 4-azafluorene ring. It was established that the loss of an RCN particle (R=H, CH₃, and C₆H₅) for unsubstituted 4-azafluorene takes place from the M⁺ and [M — H]⁺ ion, exclusively from the [M — H]⁺ ion for the methyl-substituted compounds, and from the [M — H]⁺ and [H — 2H]⁺ fragments for the phenyl-substituted derivatives. Randomization of the deuterium ions in the 9,9-d₂-4-azafluorene molecular ion was observed.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 2, pp. 246–250, February, 1978.     

Synthesis and crystal structure of aqua(dibenzo-18-crown-6)potassium (dibenzo-18-crown-6)-(tetrachlorocuprato(II)-Cl)potassium

New mixed complex compound aqua(dibenzo-18-crown-6)potassium (dibenzo-18-crown-6)(tetrachlorocuprato(II)-Cl)potassium, [K(CuCl₄)(Db18C6)]^? · [K(Db18C6)(H₂O)]⁺, is synthesized and its crystal structure is studied by the method of x-ray structural analysis. The structure includes two independent complex ions, both of guest-host type: two cations K⁺ are located in the respective cavities of the Db18C6 crown-ligand (one in each) and each is coordinated by all its six O atoms and one Cl atom of the anion-ligand [CuCl₄]^2? or O atom of the ligand water molecule. Coordination of these two K⁺ cations is completed to hexagonal pyramidal one by formation by each of unusually weak coordination bond K⁺ → π(\(C\dddot - C\)) with two C atoms of respective benzene ring in the neighboring Db18C6 ligand. In this crystal structure the complex anions and cations form dual infinite chains via these coordination bonds and interionic O-H?Cl hydrogen bonds.     

Synthesis and study of the azide-tetrazole tautomerism in 2-azido-4-(trifluoromethyl)-6-R-pyrimidines (R = H, 4-ClC<Subscript>6</Subscript>H<Subscript>4</Subscript>)

Azide-tetrazole equilibrium in azidopyrimidines bearing trifluoromethyl group on the example of 2-azidopyrimidines has been studied. The latter were synthesized via nitrosation of 2-hydrazino-4-trifluoromethylpyrimidine and reaction of NaN₃ with 4-trifluoromethyl-2- chloro-6-(4-chlorophenyl)pyrimidine. The tautomeric equilibrium 5-trifluoro methyl tetrazolo[1,5-a]pyrimidine ? 2-azido-4-trifluoromethylpyrimidine was observed in the absence of solvent and in DMSO-d₆ solution, whereas in CDCl³ only an azide form exists. For 2-azido- 4-trifluoromethyl-6-(4-chlorophenyl)pyrimidine, only an azide isomer was detected in CDCl³ solution, and in DMSO-d₆ solution it is in equilibrium with 5-(trifluoromethyl)-7-(4-chlorophenyl) tetrazolo[1,5-a]pyrimidine (the tautomer ratio is 99 : 1). Thermodynamic and kinetic parameters of 5-trifluoromethyltetrazolo[1,5-a]pyrimidine ? 2-azido-4-trifluoromethylpyri midine tautomeric rearrangement in DMSO-d₆ for 5-trifluoromethyltetrazolo[1,5-a]pyrimidine were determined using the exchange spectroscopy (EXSY) technique.     

Threefold interweaving of (4,4) nets built from R(58) rings in the hydrogen‐bonded adduct 1,4‐diaza­bicyclo[2.2.2]octane–5‐hydroxy­isophthalic acid (1/1)

The 1:1 adduct of 1,4‐di­aza­bi­cyclo­[2.2.2]­octane and 5‐hydroxy­isophthalic acid is a salt, [H(C₆H₁₂N₂)]⁺·­[HOC₆H₃(COOH)COO]^? or C₆H₁₃N₂⁺·C₈H₅O₅^?. The ions are linked by three types of hydrogen bond, i.e. N—H?O, O—H?O and O—H?N, into continuous two‐dimensional (4,4) nets built from a single type of R(58) ring. Six independent sheets of this type make up the structure and these are interwoven in sets of three.     

The Chemistry of C6H6O radical cations: A study of rearrangement reactions of halogen substituted ethyl phenyl ethers

New experimental data on the rearrangement reaction of various phenoxyethyl halides to give [C₆H₆O]^+˙ are presented and compared with previous studies so that a coherent picture of this process can be developed. By examining the metastable kinetic energy release for low energy decomposing molecular ions of the phenoxyethyl halides, it has been concluded that formation of [C₆H₆O] occurs by competitive 1,2 and 1,3 hydrogen shifts from the alkyl carbons to oxygen followed by a rate determining C? O bond cleavage. This is substantiated by the absence of a primary hydrogen isotope effect. For more highly activated molecular ions, a new mechanism comes into play as evidenced by the appearance of a small hydrogen isotope effect. It is postulated that this third mechanism involves transfer of the alkyl hydrogen to the ortho position of the ring by a rate determining 1,5 shift, followed by a 1,3 hydrogen shift from the ortho methylene group to oxygen and rapid C? O bond cleavage. This 1,3 hydrogen shift to oxygen appears to be ‘catalysed’ by the halogen atoms yielding phenol ions. No indications have been found for the formation of tautomeric 2,4-cyclohexadienone ions. Furthermore, highly activated molecular ions produce [C₆H₆O]^+˙ which can undergo metastable decomposition to lose carbon monoxide. Kinetic energy release measurements for the latter reaction show that the majority of these [C₆H₆O]^+˙ions have been formed as phenol ions as well. These arguments are supported by energetic measurements and by comparisons with previous ion cyclotron resonance and collisional activation studies.     

Experimental and DFT study on the complexation of the silver cation with calix[4]arene-bis(t-octylbenzo-18-crown-6)

From extraction experiments and γ-activity measurements, the exchange extraction constant corresponding to the equilibrium Ag⁺ (aq) + 1·Cs⁺(org) ? 1·Ag⁺ (org) + Cs⁺ (aq) taking place in the two-phase water–phenyltrifluoromethyl sulfone (FS 13) system (1 = calix[4]arene-bis(t-octylbenzo-18-crown-6); aq = aqueous phase, org = FS 13 phase) was evaluated as logK _ex (Ag⁺, 1·Cs⁺) = ?1.5 ± 0.1. Further, the stability constant of the 1·Ag⁺ complex in FS 13 saturated with water was calculated for a temperature of 25 °C: log β _org(1·Ag⁺) = 10.1 ± 0.2. Finally, by using quantum mechanical DFT calculations, the most probable structure of the cationic complex species 1·Ag⁺ was derived. In the resulting 1·Ag⁺ complex, the “central” cation Ag⁺ is bound by eight bond interactions to six oxygen atoms from the respective 18-crown-6 moiety and to two carbons of the corresponding two benzene rings of the parent ligand 1 via cation-π interaction.     

3β‐(1‐Allyl‐1‐pyrrolidinio)‐16‐(2‐pyridylmethylene)androst‐5‐en‐17β‐ol bromide hemihydrate

The title compound, C₃₂H₄₅N₂O⁺·Br^?·0.5H₂O, has the outer two six‐membered rings in chair conformations, while the central ring is in an 8β,9α‐half‐chair conformation. The five‐mem­bered ring of the steroid nucleus adopts a slightly deformed 14α‐envelope conformation. The pyridyl­methyl­ene moiety has an E configuration with respect to the hydroxyl group at position 17. The structure is stabilized by a network of O—H?Br‐type intermolecular hydrogen bonds.     

Complexation of crown ethers and heteroanalogs of 18-crown-6 with alkali and alkaline earth metal cations in dichloroethane

Data on the complexing ability of a series of crown ethers and heteroanalogs of 18-crown-6, containing S-, SO-, SO₂- and SONH fragments at the 1- and 10-positions of the macrocyclic ring, with Li, Na, K, Mg and Ba picrates in dichloroethane were obtained from the solubility of the salts in the presence of the crown compounds. It was found that 18-crown-6 is the best but the least selective ligand of all the picrates, while polyethers with SO- and SONH fragments show an appreciable selectivity toward Li⁺, and to a lesser extent, toward Mg⁺. The complexing ability of the disulfone ligand is inappreciable under the conditions studied. A 11 stoichiometry of the complexes has been found for the individual crown-picrate pairs.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 24, No. 2, pp. 191–196, March–April, 1988.     

Supramolecular architectures in cytosinium 6‐chloronicotinate monohydrate and 5‐bromo‐6‐methylisocytosinium hydrogen sulfate

Aminopyrimidine derivatives are biologically important as they are components of nucleic acids and drugs. The crystals of two new salts, namely cytosinium 6‐chloronicotinate monohydrate, C₄H₆N₃O⁺·C₆H₃ClNO₂⁻·H₂O, ( I ), and 5‐bromo‐6‐methylisocytosinium hydrogen sulfate (or 2‐amino‐5‐bromo‐4‐oxo‐6‐methylpyrimidinium hydrogen sulfate), C₅H₇BrN₃O⁺·HSO₄⁻, ( II ), have been prepared and characterized by single‐crystal X‐ray diffraction. The pyrimidine ring of both compounds is protonated at the imine N atom. In hydrated salt ( I ), the primary R₂²(8) ring motif (supramolecular heterosynthon) is formed via a pair of N—H…O(carboxylate) hydrogen bonds. The cations, anions and water molecule are hydrogen bonded through N—H…O, N—H…N, O—H…O and C—H…O hydrogen bonds, forming R₂²(8), R₃²(7) and R₅⁵(21) motifs, leading to a hydrogen‐bonded supramolecular sheet structure. The supramolecular double sheet structure is formed via water–carboxylate O—H…O hydrogen bonds and π–π interactions between the anions and the cations. In salt ( II ), the hydrogen sulfate ions are linked via O—H…O hydrogen bonds to generate zigzag chains. The aminopyrimidinium cations are embedded between these zigzag chains. Each hydrogen sulfate ion bridges two cations via pairs of N—H…O hydrogen bonds and vice versa, generating two R₂²(8) ring motifs (supramolecular heterosynthon). The cations also interact with one another via halogen–halogen (Br…Br) and halogen–oxygen (Br…O) interactions.     

Aquabis(dibenzo-18-crown-6)(tetrabromocuprato(II))dipotassium: Synthesis and crystal structure

The novel complex [K(Db18C6)(H₂O)]⁺[K(Db1)] ⁺(CuBr₄)^2? (I) was obtained. Its crystal structure (space group P2₁/c, a = 17.970 Å, b = 29.838 Å, c = 9.074 Å, β = 103.11°, Z = 4) was studied by X-ray diffraction analysis, solved by the direct method, and refined by the least-squares method in the anisotropic approximation to R = 0.098 from 6220 independent reflections (CAD-4 automated diffractometer, λMo Kα). In both “guest-host” complex ions, the K⁺ cation is in the cavity of the crown ligand Db18C6 and is coordinated by all its O atoms, as well as by a Br atom of the complex anion [CuBr₄]^2? or the water O atom. The coordination of either K⁺ cation is extended to a hexagonal bipyramid by a weak K⁺ → π\((C\dddot ---C)\) bond to two C atoms of the benzene ring of the adjacent ligand Db18C6. In the crystal, the complex anions and cations are united into infinite double chains through the above contacts and the interion hydrogen bonds O-H…Br.     

Production of negatively charged fragments in collisions of swift positive hydrogen ions with molecules

A first detection and analysis of negatively charged fragments produced in collisions of fast (20–150 keV) positive hydrogen ions (H⁺, H ₂ ⁺ and H ₃ ⁺ ) with gas-phase molecules is presented. The fragments and their abundances were determined by means of a time-of-flight mass spectrometer. Negative ions did emerge from every investigated target molecule species, such as halomethanes, sulfur hexafluoride, propane and propene, but in all cases with distinctly lower probability (cross sections in the range 10^?20?10^?18 cm²) than positively charged fragments (approximately on the scale 10^?3 or even less). Another essential result is that stable collisionally induced negative fragments are mostly monatomic ions, whereas positive fragments are in their majority more complex polyatomic ions. Furthermore, we observed a direct electron capture from a positively charged but not totally stripped projectile (here: H ₂ ⁺ and H ₃ ⁺ ) into stable or very longlived states of the molecular ions SF ₆ ^? and O ₂ ^? , the latter with the largest cross section (10^?18?10^?17 cm²) found up to now.     

Regulation of metal ion recognition by allosteric effects in thiacalix[4]crown based receptors

Three new ditopic receptors 3a-c based on thiacalix[4]arene of 1,3 alternate conformation possessing two different complexation sites have been designed and synthesized for both soft and hard metal ions. The imino nitrogens bind soft metal ion (Ag⁺/Pb²⁺/Cu²⁺) and the crown moiety binds K⁺ ion. The preliminary investigations show that 3a-c behave as ditopic receptors for Ag⁺/K⁺, Pb²⁺/K⁺, and Cu²⁺/K⁺ ions, respectively. In all the three receptors it was observed that the formation of 3a·Ag⁺/3b·Pb²⁺/3c·Cu²⁺ complex triggers the decomplexation of K⁺ ion from crown moiety and acts as a gateway, which regulates the binding of alkali metal to crown moiety. Thus, allosteric binding between metal ions ‘switch off’ the recognition ability of crown ether ring.