Zur Kenntnis des Faktors F430 aus methanogenen Bakterien: Struktur des proteinfreien Faktors

Factor F430 from Methanogenic Bacteria: Structure of the Protein-free Factor Factor F430, the porphinoid nickel-containing coenzyme of the methylcoenzyme-M reductase of metanogenic bacteria is shown to be the 3³,8³,12²,13³,18²-pentaacid derivative of the pentamethylester F430M, the structure of which had been determined previously (see structural formulae 1 and 2 ). The structure assignment rests on chromatographic, UV/VIS-, CD-, IR-, and ¹³C-NMR-spectroscopic as well as FAB-mass spectral comparision of F430 with F430M and the pentaacid prepared by acid-catalyzed hydrolysis of F430M. In the cells of Methanobacterium thermoautotrophicum, factor F430 is present in a ‘bound’ and also, depending on the growth conditions, in ‘free’ form, the latter being defined as the part of total F430 that can be extracted from the cells under extremely mild conditions (80% EtOH at 0–4°). From the (protein)-‘bound’ form, F430 is extracted by subsequently treating the cells at 0–4° with 80% EtOH containing (e.g.), 2m LiCi. From both sources, the extracted factor is the same pentaacid, and there is no indication for the existence of a protein-free F430 species that would contain additional (covalently bound) structural elements.     

Zur Kenntnis des Faktors F430 aus methanogenen Bakterien: Absolute Konfiguration

Factor F430 from Methanogenic Bacteria: Absolute Configuration Experiments on F430M ( 2 ) aiming at a potentially biomimetic, reductive reconstruction of the F430 ( 1 ) chromophore from corresponding pyrrocorphinate intermediates provided us with F430 derivatives which contain an isobacteriochlorinate chromophore system similar to the one occurring in sirohydrochlorin ( 3 ) (cf. the Scheme). Comparison of their CD spectra with the-CD spectrum of nickel( II )-sirohydrochlorinate octamethyl ester demonstrates that the absolute configurations of factor F430 and sirohydrochlorin in the region of rings A and B are the same.     

Quantitative evaluation of the biosynthetic pathways leading to δ-aminolevulinic acid from the Shemin precursor glycine via the C5 pathway in Arthrobacter hyalinus by analysis of 13C-labeled coproporphyrinogen III biosynthesized from [2-13C]glycine, [1-13C]acetate, and [2-13C]acetate using 13C NMR spectroscopy

The biosynthetic pathways leading to δ-aminolevulinic acid (ALA) from the Shemin precursor glycine via the C5 pathway in Arthrobacter hyalinus were quantitatively evaluated by means of feeding experiments with [2-¹³C]glycine, sodium [1-¹³C]acetate, and sodium [2-¹³C]acetate, followed by analysis of the labeling patterns of coproporphyrinogen III (Copro’gen III) (biosynthesized from ALA) using ¹³C NMR spectroscopy. Two biosynthetic pathways leading to ALA from glycine via the C5 pathway were identified: i.e., transformation of glycine to l-serine catalyzed by glycine hydroxymethyltransferase, and glycine synthase-catalyzed catabolism of glycine to N ⁵,N ¹⁰-methylene-tetrahydrofolic acid (THF), which reacts with another molecule of glycine to afford l-serine. l-Serine is transformed to acetyl-CoA via pyruvic acid. Acetyl-CoA enters the tricarboxylic acid cycle, affording 2-oxoglutaric acid, which in turn is transformed to l-glutamic acid. The l-glutamic acid enters the C5 pathway, affording ALA in A. hyalinus. A ¹³C NMR spectroscopic comparison of the labeling patterns of Copro’gen III obtained after feeding of [2-¹³C]glycine, sodium [1-¹³C]acetate, and sodium [2-¹³C]acetate showed that [2-¹³C]glycine transformation and [2-¹³C]glycine catabolism in A. hyalinus proceed in the ratio of 52 and 48 %. The reaction of [2-¹³C]glycine and N ⁵,N ¹⁰-methylene-THF, that of glycine and N ⁵,N ¹⁰-[methylene-¹³C]methylene-THF generated from the [2-¹³C]glycine catabolism, and that of [2-¹³C]glycine and N ⁵,N ¹⁰-[methylene-¹³C]methylene-THF transformed the fed [2-¹³C]glycine to [1-¹³C]acetyl-CoA, [2-¹³C]acetyl-CoA, and [1,2-¹³C₂]acetyl-CoA in the ratios of 42, 37, and 21 %, respectively. These labeled acetyl-CoAs were then incorporated into ALA. Our results provide a quantitative picture of the pathways of biosynthetic transformation to ALA from glycine in A. hyalinus.     

Zur Kenntnis des Faktors F430 aus methanogenen Bakterien: Über die Natur der Isolierungsartefakte von F430, ein Beitrag zur Chemie von F430 und zur konformationellen Stereochemie der Ligandperipherie von hydroporphinoiden Nickel(II)-Komplexen

Factor F430 from Methanogenic Bacteria: On the Nature of the Isolation Artefacts of F430, a Contribution to the Chemistry of F430 and the Conformational Stereochemistry of the Ligand Periphery of Hydroporphinoid Nickel(II) Complexes Factor F430 ( 1 ), a coenzyme from methanogenic bacteria, when heated in aqueous solution isomerizes to 12,13-di-epi-F430 ( 5 ) via 13-epi-F430 ( 3 ). The equilibrium mixture of the three F430 isomers in aqueous phosphate buffer solution (pH 7, 100°) contains 88 % of 5 , 8 % of 3 , and 4 % of 1 (Scheme 1). The structural assignment for the F430 isomers rests on FAB-MS-, UV/VIS-, ¹H- and ¹³C-NMR spectra of their pentamethyl esters. Chemical proof for the double epimerization at the two chiral centers of F430's ring C was provided by ozonolytic degradation of the di-epimer to give a ring-C-derived succinimide derivative that was shown to be the enantiomer of the one previously obtained by ozonolysis of F430M (see Scheme 2). The two F430 ring-C epimers 3 and 5 are the isolation artefacts described in the earlier F430 literature. F430 is susceptible to autoxidation in air and the product, that absorbs at 560 nm, was shown to be the 12,13-didehydro derivative 8 of F430 by spectroscopic characterization of its pentamethyl ester 9 . The dehydrogenation product 8 can be diastereoselectively reduced with Zn in AcOH to give natural F430 as the main product rather than the thermodynamically more stable F430-di-epimer (Scheme 3). In the double epimerization of F430, the two ring-C side chains change from a trans-quasi-diaxial arrangement to the (locally) enantiomorphic position in which the same side chains are again in a trans-quasi-diaxial arrangement. This equilibrium paradox as well as the kinetic diastereoselectivity of the reduction of 12,13-didehydro-F430 ( 8 ) are rationalized to be consequences of the general phenomenon documented earlier (see the preceding paper) according to which hydroporphinoid Ni(II) complexes all show a characteristic conformational ruffling of their ligand system due to the tendency of the (small) Ni(II) ion to contract the size of the ligand's central coordination hole (see Fig. 5 and 6).     

Synthesis,characterization, catalytic and biological activity of some bimetallic selenocyanate Lewis acid derivatives of N,N ′- bis (2-chlorobenzylidene)ethylenediamine

Complexes of MM′(SeCN)₄, (M = Co²⁺, Ni²⁺; M′ = Cd²⁺, Zn²⁺) with the Schiff base, N,N′-bis(2-chlorobenzylidene)ethylenediamine have been synthesized and characterized by elemental analysis, molar conductance, magnetic moment, FTIR, ¹H-NMR, ¹³C{¹H}-NMR and electronic spectroscopy. The catalytic activity of these complexes for hydrolysis of benzonitrile has been investigated. The complexes have also been investigated for antibacterial activity against Escherichia Coli and found to exhibit good growth inhibiton.     

Etude RMN 13C d'un Dérivé Uniformément Enrichi en 13C. Signe des Valeurs des Constantes de Couplage Observées

The ¹³C NMR parameters of 3-O-acetyl-1,2:5,6-di-O-isopropylidène-α-D-[U-¹³C] glucofuranose, used as a sample for analysis in double labelling biosynthetic experiments, have been measured. Homonuclear double resonance experiments ¹³C? {¹³C} at 62.8 MHz have permitted the determination of all the ¹³C? ¹³C coupling constants. By theoretical computation of spectra, in connection with the second order effects existing at 25.2 MHz and 15.08 MHz, the sign of the coupling constants has been determined. The theoretical computation of spectra took into account all the isotopomers and was calculated with the help of a program (adapted from the LAOCOON program) allowing for the weighted addition of the spectra.     

Coenzyme F430 from Methanogenic Bacteria: Detection of a Paramagnetic Methylnickel(II) Derivative of the Pentamethyl Ester by 2H-NMR Spectroscopy

A methylnickel(II) derivative of coenzyme F430 ( 1 ) was proposed as an intermediate in the enzymic process catalyzed by methyl-CoM reductasc. Indirect evidence points to formation of CH₃–F430M^II in the reaction of F30M¹ (obtained from F430M^II ( 2 )) with eleclrophilic methyl donors. The results presented here show, that such a compound does exist. A paramagnetic CD₃–Ni^II derivative 5b of the pentamethyl ester 2 (F430M) of coenzyme F430 was prepared by in situ methylation with (CD₃)₂Mg and characterized by its isotropically shifted ²H-NMR spectrum. At ?40°, the very broad D-signal of the axially coordinated CD₃ group is found at ?490 ppm. Comparison with the ²H- and ¹H-NMR spectra of mcthyl(tetramethylcyclam)nickel(II) derivatives 4 ([Ni^II(CH₃))(tmc)]CF₃SO₃ ( 4a ) is the only isolated CH₃–Ni derivative of a N₄macrocyclic Ni^II complex' shows that the large isotropic shift to high field is characteristic for a Me group axially bound to the Ni center. The temperature dependence of the isotropic shift of the CD₃–Ni group in both 4b and 5b follows Curie's law and yields ²H hyperfine coupling constants of ?0.65 ( 4b ) and ?0.85 MHz ( 5b ), respectively. The ¹H-NMR spectrum indicates that, in contrast to the five-coordinate monochloro complex [Ni^IICl(tmc)]⁺, intermolecular exchange of the axial ligand in [Ni^II(CH₃)(tmc)]⁺ 4a is either slow at the NMR time scale or does not occur at all.     

Herstellung und Eigenschaften einiger hydrocorphinoider Nickel(II)-Komplexe

Preparation and Properties of some Hydrocorphinoid Nickel(II)-Complexes Corphin derivatives synthesized earlier in our laboratory have been used for the preparation of tetrahydro- and hexahydrocorphinoid nickel(II)-complexes containing novel chromophore systems. The UV./VIS. and ¹H- and ¹³C-NMR. spectral data of these complexes were relevant to the structure determination of Factor F430 described in the following paper.     

Coordination of the 13C-NMR. spectrum of rifamycin S on the basis of selective uncoupling of protons

¹³C-NMR. spectra of rifamycin-S and some of its derivatives have been measured. A unambigous assignment of the signals, due to the hydrogen bearing ¹³C atoms, was possible with heteronuclear double resonance experiments. On the other hand the resonances of the quarternary ¹³C atoms could be ascribed only tentatively. ¹³C-NMR. spectroscopy gives a more complete picture of the rifamycins, especially about the naphthoquinone chromophore, than previously obtained by ¹H-NMR.     

Differential Hydrogen Exchange During Biosynthesis of Cytochalasins B and D

Sodium [2-¹³C,2-²H₃]acetate was incorporated into cytochalasin B( 1 ) by Phoma exigua and into cytochalasin D ( 2 ) by Zygosporium masonii. The ¹³C-NMR. and ²H-NMR. of the metabolites showed that most of the deuterium was lost except at carbon atoms which are in polyketide chain-initiating units.     

15-O-Deacetylrhaposerin and rhaserin -- new components of a lactone mixture from Rhaponticum serratuloides

As part of our continuing studies of lactones from the aerial part of the plant Rhaponticum serratuloides, 15-O-deacetylrhaposerin and new guaianolide called rhaserin were isolated along with the well-known loliolide. The configuration of the C(17) asymmetric center in 15-O-deacetylrhaposerin was established by X-ray diffraction analysis. The molecular structure of rhaserin was determined based on the data from ¹H and ¹³C NMR spectroscopy (including 2D NMR spectroscopy) of this lactone and its 4,15-O-isopropylidene derivative.     

Aromatic 19F–13C TROSY—[19F, 13C]-Pyrimidine Labeling for NMR Spectroscopy of RNA

We present the access to [5-¹⁹F, 5-¹³C]-uridine and -cytidine phosphoramidites for the production of site-specifically modified RNAs up to 65 nucleotides (nts). The amidites were used to introduce [5-¹⁹F, 5-¹³C]-pyrimidine labels into five RNAs—the 30 nt human immunodeficiency virus trans activation response (HIV TAR) 2 RNA, the 61 nt human hepatitis B virus ϵ (hHBV ϵ) RNA, the 49 nt SAM VI riboswitch aptamer domain from B. angulatum, the 29 nt apical stem loop of the pre-microRNA (miRNA) 21 and the 59 nt full length pre-miRNA 21. The main stimulus to introduce the aromatic ¹⁹F–¹³C-spin topology into RNA comes from a work of Boeszoermenyi et al., in which the dipole-dipole interaction and the chemical shift anisotropy relaxation mechanisms cancel each other leading to advantageous TROSY properties shown for aromatic protein sidechains. This aromatic ¹³C–¹⁹F labeling scheme is now transferred to RNA. We provide a protocol for the resonance assignment by solid phase synthesis based on diluted [5-¹⁹F, 5-¹³C]/[5-¹⁹F] pyrimidine labeling. For the 61 nt hHBV ϵ we find a beneficial ¹⁹F–¹³C TROSY enhancement, which should be even more pronounced in larger RNAs and will facilitate the NMR studies of larger RNAs. The [¹⁹F, ¹³C]-labeling of the SAM VI aptamer domain and the pre-miRNA 21 further opens the possibility to use the biorthogonal stable isotope reporter nuclei in in vivo NMR to observe ligand binding and microRNA processing in a biological relevant setting.     

The structure of chlorinated poly(vinyl chloride). VI. Comparison of the chlorination of poly(vinyl chloride) and β,β-d2-poly(vinyl chloride) with 1H-NMR and 13C-NMR spectroscopy

Samples of chlorinated poly(vinyl chloride) (CPVC) and chlorinated β,β-dideuterated poly(vinyl chloride) (β,β-d₂-CPVC) were prepared under identical reaction conditions. The microstructure of CPVC and β,β-d₂-(CPVC) was characterized by a combination of ¹H-NMR, ¹³C-NMR spectroscopy, and analytically determined chlorine content. A difference was observed in the reaction rates of chlorination of PVC and β,β-d₂-PVC, and, in their thermal chlorination in solution, also in the structure of the chlorinated products. It was proved that in the chlorination of β,β-d₂-PVC a new chlorine atom can also enter the original? CHCl? group. The results are discussed from the standpoint of the chlorination mechanism.     

Derivatives of Coenzyme F430 with a Covalently Attached α‐Axial Ligand. Part II

Coenzyme F430 pentamethyl ester 2 was partially hydrolyzed to a mixture of the five F430 tetramethyl esters 7 – 11 , which were separated by HPLC and identified by means of a full NMR characterization. The tetramethyl ester with a free COOH group at the side chain at C(3) of F430 was coupled to the N‐terminus of the peptidic spacer? ligand construct 12 selected and studied as described before. The UV/VIS and NMR spectra in CH₂Cl₂/3,3,3‐trifluoroethanol 6 : 1 show that the new derivative, the Ni^II(3³‐dehydroxy‐8³,12²,13³,18²‐tetra‐O‐methyl‐F430‐3³‐yl)‐L ‐prolyl‐L ‐prolyl‐N^π‐methyl‐L ‐histidine methyl ester ( 13 ), is an intramolecular, pentacoordinate, paramagnetic complex. In the same solvent system, the parent 3³,8³,12²,13³,18²‐penta‐O‐methyl‐F430 ( 2 ) is four coordinate and diamagnetic even in the presence of equimolar 1H‐imidazole. Protonation of the axially coordinating histidine residue of 13 gave the diamagnetic tetracoordinate base‐off form, which allowed us to establish the constitution of 13 by NMR.     

Biosynthetic pathway of 24-membered macrolactam glycoside incednine

Incednine was isolated from Streptomyces sp. ML694-90F3 as an inhibitor of anti-apoptotic function of Bcl-2/Bcl-xL oncoproteins. The structure of incednine is quite unique with a characteristic 24-membered macrocyclic lactam aglycone and two unusual aminosugars. To understand its biosynthetic pathway, the incorporation studies were carried out with [1-¹³C]acetate, [1,2-¹³C₂]acetate, [1-¹³C]propionate, l-[¹³C₅,¹⁵N]glutamate, [1,2,3-¹³C₃]glycerol, d-[6,6-²H₂]glucose, and l-[CH₃-¹³C]methionine. As a result, acetate, propionate, and glycerol were well incorporated into the elongation units of the macrolactam moiety, which indicates that its basic skeleton could be constructed by standard polyketide synthase, whereas all atoms of the starter unit were labeled by [¹³C₅,¹⁵N]glutamate suggesting that glutamate is somehow decarboxylated and rearranged into 3-aminobutyrate as the unique starter unit. The origins of the sugar moieties and methyl groups were also clarified. Based on the incorporation pattern, a plausible biosynthetic pathway for incednine is proposed.     

Hyperpolarized 13C Magnetic Resonance Imaging of Fumarate Metabolism by Parahydrogen-induced Polarization: A Proof-of-Concept in vivo Study

Hyperpolarized [1-¹³C]fumarate is a promising magnetic resonance imaging (MRI) biomarker for cellular necrosis, which plays an important role in various disease and cancerous pathological processes. To demonstrate the feasibility of MRI of [1-¹³C]fumarate metabolism using parahydrogen-induced polarization (PHIP), a low-cost alternative to dissolution dynamic nuclear polarization (dDNP), a cost-effective and high-yield synthetic pathway of hydrogenation precursor [1-¹³C]acetylenedicarboxylate (ADC) was developed. The trans-selectivity of the hydrogenation reaction of ADC using a ruthenium-based catalyst was elucidated employing density functional theory (DFT) simulations. A simple PHIP set-up was used to generate hyperpolarized [1-¹³C]fumarate at sufficient ¹³C polarization for ex vivo detection of hyperpolarized ¹³C malate metabolized from fumarate in murine liver tissue homogenates, and in vivo ¹³C MR spectroscopy and imaging in a murine model of acetaminophen-induced hepatitis.     

Photochemische Reaktionen. 103. Mitteilung [1]. Zur Photochemie konjugierter Epoxy-en-carbonylverbindungen der Jonon-Reihe: UV.-Bestrahlung α,β-ungesättigter ε-Oxo-γ, δ-epoxy-carbonylverbindungen und Untersuchung des Mechanismus der Epoxy-enon/Furan-Isomerisierung

The Photochemistry of Conjugated γ,δ-Epoxy-ene-carbonyl Compounds of the Ionone Series: UV.-Irradiation of α,β-Unsaturated ε-Oxo-γ,δ-epoxy Compounds and Investigation of the Mechanism of the Isomerization of Epoxy-enones to Furanes On ¹n, π*-excitation (λ ≥ 347 nm; pentane) of the enonechromophore of 3 , three different reactions are induced: (E/Z)-isomerization to give 13 (7%), isomerization by cleavage of the C(γ)–C(δ) bond to yield the bicyclic ether 14 (36%) and isomerization by cleavage of the C(γ)? O bond to give the cyclopentanones 15 (13%) and 16 (11%; s. Scheme 2). On ¹π, π*-excitation (λ = 254 nm; acetonitrile) 13 (14%), 15 (6%), and 16 (6%) are formed, but no 14 is detected. In contrast, isomerization by cleavage of the C(δ)? O bond to give the cyclopentanone 17 (23%) is observed. The reaction 3 → 17 appears to be the consequence of an energy transfer from the excited enone chromophore to the cyclohexanone chromophore, which then undergoes β-cleavage. Irradiation of 4 with light of λ = 254 nm (pentane) yields the analogous products 20 (18%), 21 (9%), 22 (7%), and 24 (7%; s. Scheme 2). Selective ¹n, π*-excitation (λ ≥ 280 nm) of the cyclohexanone chromophore of 4 induces isomerization by cleavage of the C(δ)? O bond to give the cyclopentanones 23 (9%) and 24 (44%). Triplet-sensitization of 4 by excited acetophenone induces (E/Z)-isomerization to provide 20 (12%) and isomerization by cleavage of the C(δ)? O bond to yield 21 (26%) and 22 (20%), but no isomerization via cleavage of the C(δ)? O bond. It has been shown, that the presence of the ε;-keto group facilitates C(γ)? C(δ) bond cleavage to give a bicyclic ether 14 , but hinders the epoxy-en-carbonyl compounds 3 and 4 from undergoing cycloeliminations. The activation parameters of the valence isomerization 13 → 18 , a thermal process, have been determined in polar and non-polar solvents by analysing the ¹H-NMR. signal intensities. The rearrangement proceeds faster in polar solvents, where the entropy of activation is about ?20 e.u. Opening of the epoxide ring and formation fo the furan ring are probably concerted.     

Electroninitiated polymerization of bis(trichlorophenoxo)-tetramethylethylene diamine copper(II)

Electroninitiated polymerization of bis(trichlorophenoxo)-N,N,N′,N′-tetramethylethylene diamine copper(II) was achieved in acetonitrile at various peak potentials of the monomer. A constant potential approach was selected in polymerization reactions. Electrolyses were carried out under air, nitrogen, and oxygen atmospheres. Structural analyses of the polymers were done by ¹H-NMR and ¹³C-NMR FT–IR spectroscopy. Molecular weights of the polymers were determined by vapor pressure (isopiestic) method.     

Mercury(II) cyanide complexes with alkyldiamines: solid-state/solution NMR,computational, and antimicrobial studies

Mercury cyanide complexes of alkyldiamines (1–6), [Hg(L)(CN)₂] (where L?=?en (1,2-diaminoethane), pn (1,3-diaminopropane), N-Me-en, N, N′-Me₂-en, N, N′-Et₂-en, and N, N′-ipr₂-en), have been synthesized and characterized by elemental analysis, IR, ¹³C, and ¹⁵N solution NMR in DMSO-d₆, as well as ¹³C, ¹⁵N, and ¹⁹⁹Hg solid-state NMR spectroscopy. Complexes 1 and 2 have been studied computationally, built and optimized by GAUSSIAN03 using DFT at B3LYP level with LanL2DZ basis set. Binding modes of en and bn (where bn?=?1,4-diaminobutane) toward Hg(CN)₂ are completely different. Complexes with en and pn show chelating binding to Hg(II), while bn behaves as a bridging ligand to form a polymeric structure, [Hg(CN)₂-bn]_∞ [B.A. Al-Maythalony, M. Fettouhi, M.I.M. Wazeer, A.A. Isab. Inorg. Chem. Commun., 12, 540 (2009).]. The solution ¹³C NMR of the complexes demonstrates a slight shift of the ?C≡N (0.9 to 2?ppm) and ?C–NH₂ (0.25 to 6?ppm) carbon resonances, while the other resonances are relatively unaffected. ¹⁵N labeling studies have shown involvement of alkyldiamine ligands in coordination to the metal. The principal components of the ¹³C, ¹⁵N, and ¹⁹⁹Hg shielding tensors have been determined from solid-state NMR data. Antimicrobial activity studies show that the complexes exhibit higher antibacterial activities toward various microorganisms than Hg(CN)₂.