Synthesis,photophysical and NMR evaluations of thiourea-based anion receptors possessing an acetamide moiety

The synthesis and photophysical evaluation of three diaryl thiourea-based anion receptors (4–6) for comparison with their urea counterparts (1–3) is outlined. These anion receptors posses an acetamide functionality on one of the aryl groups and an electron-withdrawing CF₃ group on the other. By varying the position of the acetamide group, in the o-, m- and p-positions of 4–6, respectively, the anion binding ability was both tuneable and found to be, in some cases, significantly different from that seen for the urea analogues 1–3. The binding affinities of the receptors 4–6, as well as the binding stoichiometries, were evaluated using UV–vis absorption spectroscopy in MeCN. However, these receptors were not sufficiently emissive to quantify the anion recognition using fluorescence. The results confirmed strong binding of these receptors to anions such as fluoride, acetate, phosphate, pyrophosphate and chloride. Nevertheless, the overall results obtained did not conform to the anticipated trends seen for 1–3, which is most likely due to the enhanced binding affinity of the thiourea analogues 4–6. The binding interactions were also investigated by using ¹H NMR which confirmed that these receptors interacted with the anions in a stepwise manner, where the primary anion binding interaction occurred at the thiourea side, which led to an activation of the acetamide moiety towards the second anion binding interaction, an example of an allosteric activation mode.     

Molecular recognition of amphiphilic p-sulfonatocalix[4]arene with organic ammoniums

The binding abilities and thermodynamic origin for the intermolecular complexation of two water-soluble calixarenes, p-sulfonatocalix[4]arene (SC4A) and 5,11,17,23-tetrasulfonato-25,26,27,28-tetrakis(n-butyl)-calix[4]arene (SC4A-Bu), with six organic cations: 1,4-diazabicyclo[2,2,2]octane (G1), 3,5,6,8,-tetrahydropyrazino[1,2,3,4-Imn][1,10]phenanthroline (G2), diquat (G3), paraquat (G4), 1-methylpyridin-1-ium (G5) and 1,3-dimethylimidazolium (G6), have been determined by means of isothermal titration calorimetry in aqueous solutions at pH 7.0, 298.15 K, and their binding modes have been investigated by NMR spectroscopy. The obtained results indicate that the binding modes of SC4A-Bu and SC4A change a little but their binding affinities show great difference, resulting from the distinguishable binding thermodynamics. The binding selectivity of G1 is up to 688 times for the SC4A/SC4A-Bu hosts, and SC4A-Bu prefers to include planer molecules of large π system with low electron density. The aggregation behaviours of SC4A-Bu before and after complexation with G3 were then investigated, showing that G3 is able to induce the aggregation of SC4A-Bu.     

Influence of amidoammonium calix[4]resorcinarenes on methyl orange protolytic equilibrium: supramolecular indicator systems

Here, we report on the study of cationic amidoammonium calix[4]resorcinarenes 1–5 of various lipophilicity capable of binding acid–base indicator methyl orange (MO). We identified the contributions of macrocycle aggregation and conformational mobility in the binding of MO. The effective pK_a values of bound MO systematically decrease as the size and the packing density of the aggregates increase with an increase in calixresorcinarene lipophilicity. Consideration of a series of macrocycles clearly shows that large aggregates form most stable complexes, binding guests not on individual level but as aggregates. It was found that the most stable MO complex with 5 is formed due to electrostatic binding with ammonium groups of the macrocycle and incapsulation of MO in a hydrophobic layer of the aggregates. We have shown that competitive binding of MO and cationic surfactants by aggregates of 5 is suitable for visual/spectrophotometric detection of colourless anionic substrates.     

Complexation of a Macrocycle Containing Thiopyrimidine and Uracil Moieties with Dicarboxylic and Amino Acids in Various Organic and Aqueous Organic Solutions

The complexation of a macrocycle containing thiopyrimidine and uracil moieties (M) with amino acids and some dicarboxylic acids was studied by pH-metric, UV-VIS, ¹H NMR spectroscopy methods in chloroform, methanol, aqueous 1,4-dioxane, and biphasic water–chloroform media. The complexation of M with acids is too weak to solubilize them from the solid state into chloroform solutions containing M. The ¹H NMR spectra and pH-metric data of aqueous 1,4-dioxane (80 vol.%) reveal the pH-dependent 1:1 binding between M and the acids studied. The protonation of M is not a prerequisite for binding of fumaric, succinic, o-phtalic acids and the series of amino acids, whereas binding of maleic acid requires the protonation of both thiopyrimidine moieties of M. Therefore,M·(H⁺)₂ exhibits strong selectivity towards maleic acid in aqueous 1,4-dioxane and in biphasic water–chloroform media.     

The recognition of n-alkyl phosphonic or carboxylic acid by mono-squaramide-functionalised pillar[5]arenes

Abstract: The synthesis of a novel mono-squaramide-functionalised pillar[5]arene 1a is reported, by which n-hexylphosphonic acid (HPA) or n-heptanoic acid (HA) could be recognised. The results of ¹H NMR titration, Job Plot, ESI-MS and 2D NMR experiments reveal that 1a forms a 1:1 stoichiometric complex with HPA and HA, respectively, and its association constants (log K/M^? 1) with HPA and HA are determined to be 3.83 ± 0.05 and 1.98 ± 0.04, respectively, suggesting much stronger binding ability of 1a with HPA over HA. To compare with 1a, 1b with the electron-withdrawing group (CF₃) on the phenyl ring of squaramide moiety is synthesised as well, which shows the similar selective binding ability for HPA and HA but with a little stronger binding ability than 1a.     

New insight into the DNA binding studies,In-Vitro anti-cancer activity and molecular modelling of dioxo complexes of Molybdenum(VI) and Tungsten(VI) hydroxamic acids

The present study embodies the detail of interaction of Complex 1, Bis(N-phenyl-o-methoxybenzohydroxamato)Molybdenum(VI): [N-PMBHA-Mo(VI)] and Complex 2, Bis(N-phenylbenzohydroxamato)Tungsten(VI): [N-PBHA-W(VI)] with ct-DNA (Calf thymus-DNA) and its consequences by UV–Visible absorption spectroscopy, fluorescence spectroscopy, three-dimensional fluorescence spectroscopy, viscosity measurements and molecular docking. The intrinsic binding constant, K_b of complexes were determined which follows the order as complex 1 > complex 2 along with variation in shift and intensity for the complexes. Fluorescence spectroscopy applied for the determination of Stern–Volmer quenching constant, binding constant and the number of binding sites which reveals groove mode of binding. Non-radiative energy transfer between donor and acceptor molecule exposed by Förster energy transference theory (FRET) studies. The increase in the relative viscosity of ct-DNA with increasing the concentration of the complex 1 and complex 2 is also revealed. FTIR analysis also revealed that both the complexes interacted positively with bases and phosphates of ct-DNA. The docking studies complemented the experimental results revealing minor groove mode of binding for both the complexes. Finally, the in-vitro cytotoxicity studies indicate that the complexes have excellent anticancer activity against the breast cancer cell line, MCF-7, which could be a constructive guideline to produce new generations of anticancer agents.     

Tryptophan receptors containing acridine-based thiourea

Four derivatives of acridine and acridinium compounds (L1, L2, L1H and L2H) comprised thiourea-binding sites were synthesised. The binding abilities of receptors L1, L2, L1H and L2H towards amino acids (l-Trp, l-Phe, l-Leu, l-Ala and l-Gly) were studied by ¹H NMR spectroscopy, UV–vis and fluorescence spectrophotometry. Hydrogen bonding interactions between thiourea-binding site of the ligand and the carboxylate groups in zwitterionic amino acids were found to be the main interactions driving complexation to take place. The stoichiometry of 1:1 ligand to amino acid was observed in all cases. Neutral ligands L1 and L2 showed weak binding towards all studied amino acids. The cyclic ligand L1 showed better binding ability towards tryptophan (Trp) than the acyclic ligand L2 did (K for Trp is 307 and 266 M^? 1 for L1 and L2, respectively). Interestingly, binding abilities of the protonated ligands, L1H and L2H, towards studied amino acids, especially Trp (K for Trp is 3157 and 2873 M^? 1 for L1H and L2H, respectively), were increased due to R–COO^? …H…N⁺–acridinium interactions. Calculated structures of L1H·Trp and L2H·Trp showed that the polyglycol moiety in L1H provided a hydrophobic cavity for binding Trp resulting in a stronger binding affinity of L1H over L2H.     

Photo-Induced Switchable Binding Behavior of Bridged Bis(β-cyclodextrin) with an Azobenzene Dicarboxylate Linker

A bridged bis(β-cyclodextrin) (1) with an azobenzene dicarboxylate linker was synthesized, and its binding behavior with a fluorescent dye, acridine red (AR), was investigated by means of fluorescence spectroscopy. Due to the photo-induced conversion of the azobenzene dicarboxylate linker from the trans-conformer to the cis-conformer, 1 exhibits a different binding behavior before and after UV light irradiation, giving a stronger binding ability towards AR in the cis form. This switchable binding behavior of 1 may open a new channel to the design of azobenzene-linked dimeric receptors as photo-induced molecular devices.     

An experimental investigation of the molecularly imprinted polymers as tailor-made sorbents of diazinon

Diazinon imprinted sorbent can be a useful tool for selective enrichment, clean-up, and purification methods. In this study, investigation of synthesis and evaluation of diazinon imprinted polymers has been performed using equilibrium binding experiments. It is possible to use molecularly imprinted polymers as sorbents for anti-choline esterase (Anti-ChE) organophosphate pesticides (Ops). It has been found that MAA monomer is most suitable for the preparation of appropriate diazinon molecularly imprinted polymers (MIPs). The type of porogen also influences the binding results. The best porogen for diazinon imprinting is chloroform due to its poor hydrogen bonding capacity.     

9-Tempoylmiinoacridine: A Spin-Labeled,Fluorescent Probe of Acetylcholinesterase

Abstract

9-tenpoylaminoacridine, a new spin-labeled probe of acetylcholinesterase, binds reversibly to the aggregating forms of this enzyme obtained from Electrophorus electricus.

The decrease in EPR signal amplitude upon binding is used to calculate a dissociation constant of 0.37 μM for this interaction. The calculated equivalent weight per binding site of 98,400 corresponds to approximately one binding site per enzyme subunit, based on the proposed structure of the enzyme.     

Copper complexes as chemical nucleases

Redox active mononuclear and binuclear copper(II) complexes have been prepared and structurally characterized. The complexes have planar N-donor heterocyclic bases like 1,10-phenanthroline (phen), dipyridoquinoxaline (dpq) and dipyridophenazine (dppz) ligands that are suitable for intercalation to B-DNA. Complexes studied for nuclease activity have the formulations [Cu(dpq)₂(H₂O)] (ClO₄)₂.H₂O (1), [CuL(H₂O)₂(μ-ox)](ClO₄)₂ (L = bpy,2; phen,3; dpq,4; and dppz,5) and [Cu(L)(salgly)] (L = bpy,6; phen,7; dpq,8; and dppz,9), where salgly is a tridentate Schiff base obtained from the condensation of glycine and salicylaldehyde. The dpq complexes are efficient DNA binding and cleavage active species. The dppz complexes show good binding ability but poor nuclease activity. The cleavage activity of thebis-dpq complex is significantly higher than thebis-phen complex of copper(II). The nuclease activity is found to be dependent on the intercalating nature of the complex and on the redox potential of the copper(II)/copper(I) couple. The ancillary ligand plays a significant role in binding and cleavage activity.     

磺酸咔咯及其镓(Ⅲ)配合物与DNA的相互作用和光核酸酶活性

本文用紫外-可见光谱、荧光光谱、圆二色光谱和粘度法研究了2,17-二(磺酸钠基)-5,10,15-三(五氟苯基)咔咯(1)及其镓配合物(1-Ga)与小牛胸腺DNA(ct-DNA)的相互作用。结果表明1和1-Ga通过外部结合的方式与ct-DNA相互作用,且结合能力1-Ga比1大。琼脂糖凝胶电泳实验显示1和1-Ga均具较好的光核酸酶活性,1-Ga光断裂DNA效果比1好,其光断裂机理与羟基自由基的产生有关。     

Calix[4]arene-based crab-like molecular sensors for highly selective detection of mercury and copper ions

In this work, two novel chemosensors based on calix[4]arene bearing (thio)barbituric acid groups (BC1 and BC2) were synthesised, and their structures were characterised by HRMS, NMR and FTIR. Furthermore, their binding properties towards various biologically relevant metal ions were studied by fluorescence titrations, ¹H NMR spectroscopies and Job’s plot evaluations. The chemosensor BC1 displayed excellent binding affinity and selectivity towards Cu²⁺, which was characterised using fluorescence spectroscopy. On the other hand, BC2 exhibited a very remarkable fluorescence enhancement as well as visible colour change from pale green to sunset yellow, in presence of Hg²⁺ ions. Finally, Job’s plot method revealed 1:1 binding stoichiometry for both BC1:Cu²⁺ complex and BC2:Hg²⁺ complex.     

Synthesis and biological evaluation of 1,2,4-oxadiazole linked 1,3,4-oxadiazole derivatives as tubulin binding agents

As an aspect of our ongoing research in search of new anticancer agents, a series of novel analogs of 1,3,4-oxadiazole embedded with 1,2,4-oxadiazole moieties (11a–j) were synthesized. The structure of the final compounds was confirmed by ¹H NMR, ¹³CNMR and mass spectroscopic techniques and evaluated for their in vitro anticancer activity against three human cancer cell lines (lung, breast). Among the synthesized compounds, 11?b, 11?g, 11?h, and 11i showed potent anticancer activity with IC₅₀ values within the range of 0.34?±?0.025 to 2.45?±?0.23?μM against three human cancer cell lines. Further, these compounds (11a–j) were investigated for molecular docking studies. Among them, compound 11?h showed strong binding affinity on binding sites of target protein EGFR (PDB ID: 4hjo) with highest docking score (-7.028). It revealed that 11?h was a strong tubulin binding agent.     

New supramolecular ferrocenyl amides: synthesis,characterization, and preliminary DNA-binding studies

Three ferrocenyl amides have been synthesized and characterized by analytical techniques. Based on single-crystal X-ray analysis, a supramolecular structure was attributed to 1 owing to the presence of intermolecular non-covalent interactions. UV-Visible spectroscopy, viscometry, and dynamic laser light scattering was used to assess the mode of interaction and binding of these complexes with DNA, which varied in the sequence 1?>?2?>?3. The binding is presumably due to the ability of these complexes to form secondary non-covalent interactions with DNA bases. Complex-DNA adduct formation depends on the nature of R of the amide.     

A dansyl-based optical probe for detection of singly and doubly charged anions

This paper reports the synthesis of a new molecule, 5-(dimethylamino)naphthalene-1-sulfonic acid 2,3-bis(3-phenylureido)phenyl ester (1), as an optical probe for anions. The effect of the presence of various anions on the spectroscopic properties of 1 was examined using UV–vis absorption spectroscopy, fluorescence and ¹H NMR titration experiments. Strong binding of 1 to carboxylate, oxalate, cyanide and dihydrogen phosphate anions resulted in an increase in the emission of 1 and changes in its ¹H NMR chemical shifts. Binding constants of 1 to anions were also calculated based on the binding isotherms derived from the spectroscopic titrations.     

Examining the binding mechanism of 3,4-dihydro-3-(2-oxo-2-phenylethylidene)-quinoxalin-2(1H)-one and its fragments to Cu2+

The structure and stoichiometries of the complexes that could be formed between Cu²⁺ and 3,4-dihydro-3-(2-oxo-2-phenylethylidene)-quinoxalin-2(1H)-one (1) were investigated by various spectral techniques such as IR, fluorescence, UV–vis and electron paramagnetic resonance. The results suggest that initially 3?:?1 and 2?:?1 (1/Cu²⁺) complexes are formed at low Cu²⁺ concentration and upon adding more Cu²⁺, 1?:?1 (preferred) and 1?:?2 complexes are generated. Since 1 possesses two possible binding sites, further exploration was done by testing the binding ability of Cu²⁺ to fragments of 1, namely β-enaminoketone derivatives (2–3) and quinoxaline-2-one (4), and by executing calculations of thermodynamic parameters of the reaction between 1 and Cu²⁺ in ethanol, optimized geometries of the possible complexes, and estimation of stability constants at various stoichiometries. Consequently, a step-by-step binding mechanism is suggested for formation of various complexes between 1 and Cu²⁺.     

New Tetrafunctionalized Cone Calix[4]arenes as Neutral Hosts for Anion Recognition

Abstract

The synthesis and anion binding properties of several new cone calix[4]arenes having different flexibility and tetrafunctionalized at the upper rim with various type of hydrogen bonding donor groups such as thioureas (1–3), trifluoroacetamides (4, 5) and perfluorinated alcohols (6) are reported. The results obtained show that thiourea receptors are the most effective in the complexation of all anions and that the rigid cone compound 2 is more efficient than the mobile cone analog 1 in the binding of spherical anions, whereas the reverse is true for the complexation of tetrahedral H₂PO₄ ^? anion.     

Synthesis,interaction with double-helical DNA and biological activity of new Pt(II) and Pd(II) complexes with phenylglycine

The mononuclear palladium(II) (1) and platinum(II) (2) complexes containing phenylglycine have been synthesized and characterized by elemental analysis, IR spectra, and ¹H NMR spectra. The structure of 1 was determined by X-ray diffractometry. The interaction between the complexes and fish sperm DNA (FS-DNA), adenosine-5′-triphosphate (ATP), and adenine (Ade) were investigated by UV absorption spectra, the interaction mode of the complex binding to DNA was studied by fluorescence spectra and viscometry. The results indicate that the two complexes have different binding affinities to DNA, complex 2 > complex 1. Gel electrophoresis assay demonstrates that the two complexes have the ability to cleave pBR322 plasmid DNA. Cytotoxicity experiments were carried out toward four different cancer cell lines, and 1 shows lower inhibitory efficiency than 2, consistent with the binding affinities towards DNA.     

波长检测型表面等离子体子共振生物传感器测定β-环糊精与血清白蛋白的相互作用

采用自行组装的表面等离子体子共振(SPR)传感装置, 固定入射角, 以波长为变量, 以电荷耦合器件(CCD)为检测系统, 用对金和蛋白质均有较强作用的巯基丙酸作为基底膜, 分别监测了β-环糊精(CD)与人血清白蛋白(HSA)、牛血清白蛋白(BSA)反应的动力学过程, 并分别计算了它们的动力学常数、热力学常数及键合百分率. 此外, 对传感器的再生性也进行了研究. 结果表明, β-CD与HSA, BSA相互作用的平衡常数分别是7.79和51.00 μmol/L, 且键合百分率都很高, 分别是98.77%和94.25%. 这些结果有力地说明了β-CD作为药物载体, 可以提高生物利用度, 延长药物半衰期.