Chromatographic separation and molecular modelling of triazines with respect to their inhibition of the growth of L1210/R71 cells.

The potential anti-cancer activity of triazines was characterized by the inhibition of the growth of L1210/R71 cells. The retention times for fifteen triazine derivatives were measured by high-performance liquid chromatography on octyl silica and silica gel columns. The slope and intercept values of the plot of the logarithmic capacity factor versus acetonitrile concentration were calculated from the reversed-phase retention measurements. The adsorption properties of the compounds were characterized by the retention data obtained on silica gel columns using high and low concentrations of ammonium salts in the hydro-organic mobile phase. The non-polar, non-polar unsaturated and polar surface areas, the surface energies, the dipole moments and the Van der Waals radii of the molecules were calculated from their chemical structures after energy minimization on the basis of molecular mechanics. Correlation analysis of these parameters showed that the inhibitory effect is dependent on the polar and non-polar surface areas of the molecules. The reversed-phase slope showed a significant correlation with the difference between the accessible and the total non-polar surface areas of the compounds, whereas the intercept values correlated with the non-polar accessible surface area. The adsorption properties of the triazines on silica gel cannot be described by the molecular parameters investigated here.     

Prediction of retention time of phenols in liquid chromatography

The chromatographic behavior of phenols in reversed-phase mode liquid chromatography differs from that of non-ionic compounds such as alkyl alcohols, alkylbenzenes, halogenated benzenes, polyaromatic hydrocarbons, and aromatic acids. Therefore, the retention times of 61 phenols were measured in a system of an octadecyl bonded silica gel and acetonitrile/water mixtures. The logarithm of the capacity ratio (log k') was found to be a linear function of the hydrophobicity (log P) in acidic acetonitrile/water mixtures. This result was applied to a different octadecyl bonded silica gel. Eight phenols were selected as standard compounds, and their log k' values were measured in 0.05 M phosphoric acid in 10 to 90% acetonitrile/water mixtures. An empirical polynomial relation was obtained between the concentration of acetonitrile and the slope of the log k' vs log P curve. Finally the capacity ratio of all phenols were calculated in given eluents by the equations derived from the measurements of standard compounds and the calculated log P values. The difference between predicted capacity ratios and measured ones was within 10%.     

Determination of lipophilicity for antitumor acridinone derivatives supported by gradient high-performance liquid chromatography method

The lipophilicity values of selected acridinone (imidazoacridinone and triazoloacridinone) derivatives were measured by gradient reversed-phase high-performance liquid chromatography (RP-HPLC) using a C18 stationary phase with a water/acetonitrile mixture as a mobile phase. The retention times obtained served as input data and appropriate log k_w values (i.e., the retention factor log k_w extrapolated to 0% organic modifier) as an alternative to log P were calculated using the DryLab program. The relationships between the lipophilicity (log k_w) and the chemical structure of the studied compounds, as well as correlation between experimentally determined lipophilicities (log k_w) and log P data calculated using some commonly available software, are discussed.     

Evaluation of solute hydrophobicity by reversed-phase high performance liquid chromatography using aqueous binary mobile phases

Summary The dependence of the capacity factor (k′) on the concentration of the organic modifier (D) in the aqueous binary mobile phase in reversed-phase high-performance liquid chromatography has been investigated to evaluate the hydrophobicity of the solute molecule. The r-values, defined as the slope of log k′ vs. log(1/D) plots, were measured for various solutes and related to the non-polar surface area and the partition coefficients. The r-value was found to be a good indication of solute hydrophobicity. Detailed investigation of the results allowed to consider statistically the molecular posture of the solute adsorbed onto the stationary alkyl ligand.     

Retention parameters of aromatic hydrocarbons with mono-substituted polar groups in binary RP-HPLC systems

Summary Capacity factor (k′) values of aromatic hydrocarbons with mono-substituted polar-groups are correlated for reversed-phase systems involving stationary phases with C₁₈ or C₄ ligands chemically bonded to silica and a binary aqueous eluent containing modifiers: methanol, acetonitrile, tetrahydrofuran, isopropanol, dioxane or dimethoxyethane. The relative retention variations of the solutes are interpreted with special consideration of their interactions with non-polar stationary phases and the molecular structure of the modifiers and solutes. Rules for retention and selectivity optimisation in RP-HPLC systems are given.     

Extrathermodynamic Study of Retention Equilibrium in RP-LC Using a C18-Silica Monolithic Stationary Phase

This study is concerned with the explanation of some thermodynamic properties of the retention equilibrium on a C₁₈-silica monolithic column. Pulse response experiments were carried out in a reversed-phase liquid chromatography system using a methanol/water mixture (70/30, v/v) and n-alkylbenzene homologs as the mobile phase and sample compounds, respectively, in the temperature range between 278 and 318 K. The retention equilibrium constant (K _a) was calculated from the first absolute moment of elution peaks. The dependence of K _a on the column temperature was analyzed using the modified van??t Hoff plot proposed by Krug et al. to derive the changes of the Gibbs free energy, the enthalpy and the entropy concerning the retention behavior. First, the presence of a real enthalpy?Centropy compensation (EEC) for the retention equilibrium was demonstrated. Then, a thermodynamic model based on the real EEC was developed to explain the temperature dependence of the linear free energy relationship (LFER) of the retention equilibrium. The model indicates how the slope and intercept of the LFER are correlated with the compensation temperatures and several molecular thermodynamic parameters. The model was effective for explaining the thermodynamic properties of the retention equilibrium of the C₁₈-silica monolithic stationary phase.     

Different van der Waals radii for organic and inorganic halogen atoms: a significant improvement in IMOMM performance

The discrepancies between X-ray and integrated molecular orbital molecular mechanics computed geometries for Os(H)₂Cl₂(PⁱPr₃)₂ and Ir(H)₂Cl(P^tBu₂ Ph)₂ are explained by the inadequacy of the default molecular mechanics van der Waals radii for halogen elements. A simple procedure is proposed for the calculation of corrected van der Waals radii, and the application of the corrected radius for chloride is shown to improve substantially the results for the systems under test. Received: 25 February 1997 / Accepted: 7 April 1997     

Rapid Estimation of Octanol–Water Partition Coefficient for Triazole Fungicides by MEKC with Sodium Deoxycholate as Surfactant

A rapid estimation of octanol–water partition coefficient (log P _ow) was developed for triazole fungicides by micellar electrokinetic chromatography (MEKC). Five standard compounds with known log P _ow values from 2.9 to 4.3 (cyproconazole, bromuconazole, epoxiconazole, bitertanol and difenoconazole) were used for constructing the calibration curve of the log P _ow against the MEKC retention factor, log k. A linear relationship was achieved between log P _ow and log k, in the MEKC system containing 40 mM sodium deoxycholate (SDC) and 4 mM borate buffer at pH 9.3, with a correlation of determination, r ² = 0.9905. The log P _ow values of four test compounds of triazole fungicides (triadimenol, myclobutanil, propiconazole and penconazole) were calculated based on the log k values measured by MEKC and the slope and intercept of the calibration curve. This MEKC method can give good estimation of the log P _ow of the four test compounds of triazole fungicides with the differences between the literature log P _ow values and estimated log P _ow from the MEKC method were from 0.15 to 0.23 log units.     

Van der Waals volume fragmental constants

Van der Waals (vdW) volumes (V_w,x) of 117 molecular fragments (X) have been calculated by numerical integration of the van der Waals envelope using the hard-sphere approximation, standard geometries, and effective atomic van der Waals radii which were determined by comparison of their effects on the predicted sterically allowed conformations of peptides with observed crystal structures. vdW volume fragmental constants give accurate estimates of molecular, vdW volume as sum of approximate V_w,xs.     

Ratiometric Near-Infrared Fluorescent Probes Based on Hemicyanine Dyes Bearing Dithioacetal and Formal Residues for pH Detection in Mitochondria

Ratiometric near-infrared fluorescent probes (AH⁺ and BH⁺) have been prepared for pH determination in mitochondria by attaching dithioacetal and formal residues onto a hemicyanine dye. The reactive formyl group on probe BH⁺ allows for retention inside mitochondria as it can react with a protein primary amine residue to form an imine under slightly basic pH 8.0. Probes AH⁺ and BH⁺ display ratiometric fluorescent responses to pH changes through the protonation and deprotonaton of a hydroxy group in hemicyanine dyes with experimentally determined pKa values of 6.85 and 6.49, respectively. Calculated pK_a values from a variety of theoretical methods indicated that the SMD_BONDI method of accounting for solvent and van der Waals radii plus including a water molecule located near the site of protonation produced the closest overall agreement with the experimental values at 7.33 and 6.14 for AH⁺ and BH⁺ respectively.     

COSMIC(90): An improved molecular mechanics treatment of hydrocarbons and conjugated systems

Summary Four modifications to the COSMIC molecular mechanics force field are described, which greatly increase both its versatility and the accuracy of calculated conformational energies. The Hill non-bonded van der Waals potential function has been replaced by a two-parameter Morse curve and a new H-H potential, similar to that in MM3, incorporated. Hydrocarbon energies in particular are much improved.A simple iterative Hückel pi-electron molecular orbital calculation allows modelling of conjugated systems. Calculated bond lengths and rotational barriers for a series of conjugated hydrocarbons and nitrogen heterocycles are shown to be as accurate as those determined by the MM2 SCF method.Explicit hydrogen-bonding potentials for H-bond acceptor-donor atom pairs have been included to give better hydrogen bond energies and lengths. The van der Waals radii of protonic hydrogens are reduced to 0.5 Å and the energy well depth is increased to 1.0 kcal mol^-1.Two new general atom types, N⁺ _sp ² and O^- _sp ³ , have been introduced which allow a wide variety of charged conjugated systems to be studied. A minimum of parameterisation is required, as the new types are easily included in the Hückel scheme which automatically adjusts bond and torsional parameters according to the defined bond-order relationships.     

Van der Waals radii of elements from the data of structural inorganic chemistry

Van der Waals radii of elements were determined from the data of the structural inorganic chemistry: from intersitial distances in CdX₂- and graphite-type structures, bond lengths in van der Waals molecules, molar volumes of A₂-type substances, refractometry data, and from quantum chemical and correlation ratios. The recommended values of van der Waals radii of elements are tabulated.Translated fromIzyestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 24–29, January, 1995.The author is grateful to the administration of the Department of Chemistry at the University of Durham (Great Britain) for the opportunity to perform this work and to Prof. J. Howard and Prof. K. Wade for useful discussions.     

THE SURFACE,INTERFACIAL AND ELECTROKINETIC PROPERTIES OF BIOMINERALS

ABSTRACT

The apolar (Lifshitz van der Waals) component (γ ^LW _S) and the polar [electron-acceptor (γ ⁺ _S) and electron-donor (γ ^? _S)] parameters of the surface tension of biominerals and surfaces of dental hard tissues have been measured, as well as their ζpotentials. The interfacial tensions between their surfaces and aqueous solutions, determined using van Oss-Chaudhury-Good equations, are comparable with the interfacial free energy values obtained from the kinetics of crystallization and dissolution using a constant composition technique. The electron-donor (γ ^? _S) parameters indicate that most of these minerals have a moderate to high hydrophobicity. The interfacial tension values are consistent with the order of the solubilities of these minerals.     

An approach to the prediction of retention times in liquid chromatography

The utility of Rekker's hydrophobic fragmental constant has been examined for optimization of reversed-phase mode liquid chromatographic separations. The chromatographic behavior of about 60 non-ionic compounds was measured in different acetonitrile/water mixtures and the logarithm of their capacity factors (log k) was correlated with their calculated hydrophobicities (log P). Linear relations were found in each case between log k and log P. The slope of the various lines was related to the percentage concentration of acetonitrile in the mobile phase. It was shown that, by using nine stand ard compounds and measuring their capacity factors in five eluents with different acetonitrile concentrations, the retention time could be predicted for 60 compounds. Calculation of the concentration of the organic modifier was also possible in a system of well coated octadecyl bonded packings with acetonitrile/water mixtures as eluent. Prediction of the capacity factor was accomplished to within 5% error.     

The Effect of Copolymer Composition on Surface Free‐Energy of Poly(2‐Hydroxyethyl Methacrylate–Crotonic Acid) Copolymers

Abstract

Poly(2‐hydroxyethyl methacrylate–crotonic acid) P(HEMA/CrA) copolymers with varying compositions were prepared from ternary mixtures of 2‐hydroxyethyl methacrylate (HEMA)/crotonic acid (CrA)/water by using ⁶⁰Co γ‐rays. The wetting forces were determined according to the Wilhelmy Plate Technique. Di‐iodomethane, ethylene glycol, and formamide were used as probe liquids. Lifshitz–van der Waals surface energy components, Lewis acid–base surface components, and total surface energies were calculated using van Oss et al. methodology. It was determined that Lifshitz–van der Waals component (γ_S ^LW) of the copolymers did not differ much from the copolymer composition. However, the electron‐donor surface free energy components (γ_S ^?) of the copolymers were decreased considerably with the increase of the CrA content of the copolymers, the surfaces of these copolymers were still found to have a basic character.     

Wettability study of surface modified silica aerogels with different silylating agents

In wettability study, surface free energy interactions are of crucial importance for silica aerogels in which absorption of organic liquids and transportation of chemicals carried out for chemical and biotechnological applications. In present study, we have used Lifshitz–van der Waals/acid–base approach for calculation of surface free energy of aerogel sample. We have investigated that the surface free energy values of aerogels are 45.95, 51.42 and 45.69 mJ/m² by modifying their surfaces using 7 % chlorotrimethylsilane (TMCS), dimethyldichlorosilane (DMDCS) and hexamethyldisilazane (HMDZ) silylating reagents with solvent, respectively. The alcogels were prepared by two step acid–base catalyzed process where the molar ratio of precursors tetraethoxysilane:methanol:oxalic acid:NH₄OH:NH₄F was kept at optimal value of 1:16.5:0.71:0.58:0.60:0.98, respectively. To modify gel surfaces, TMCS, DMDCS and HMDZ concentration have been varied from 5 to 12 % and such alcogels were dried at ambient pressure. The aerogels have been characterized by fourier transform infrared spectroscopy, scanning electron microscopy, thermo-gravimetric and differential thermal analysis and Wetting properties of silica aerogel surfaces was studied by contact angle measurements. The surface chemical composition of DMDCS modified silica aerogels was studied by using X-ray photoelectron spectroscopy. As there is not any direct method, we have used Lifshitz–van der Waals/acid–base approach which gives, polar and non-polar components of aerogels surface free energy.