Modelling Affinity Chromatography

Abstract

Affinity chromatography plays a significant role in the separation and purification of biologically active macromolecules in laboratory and large-scale applications. There is a need for models which could be used to predict accurately the dynamic behavior of affinity chromatography separations, in order to permit the design, optimization, control, and process scale-up of affinity chromatography systems. Furthermore, the construction and use of such models will contribute to a better fundamental understanding of the physicochemical and biospecific mechanisms involved in affinity chromatography processes. The parameters of the models should be obtainable by using information from a small number of experiments.

This work reviews the modeling of affinity chromatography, and presents general models that could be used to describe the dynamic behavior of the adsorption, wash, and elution stages of affinity chromatography systems. Certain model structures, modeling approaches and operational strategies for systems having porous or nonporous adsorbent particles are also suggested, and experiments are proposed whose data are necessary for parameter estimation and model discrimination studies in affinity chromatography.

Particular emphasis is given to :he modeling of the intrinsic mechanisms of intraparticle diffusion, adsorption, and desorption, because the intrinsic mechanisms are normally independent of the mode of operation (i.e., batch, fixed bed, fluidized bed, continuous countercurrent, or others).     

Packings and stationary phases for biopolymer separations by HPLC

Summary Packings and stationary phases applied to high resolution separations of proteins, enzymes, and nucleic acids must satisfy a series of distinct criteria that are different from those usually required by HPLC of low molecular weight non-biologically active analytes. These requirements have been met through substantial improvements in classical gel media together with novel developments in silica supports, and have led to a family of products with tailor-made and reproducible properties. Supports consisting of cross-linked organic gels, and inorganic materials (mostly silicas) are now available with graduated particle sizes, pore sizes, porosities and surface areas as well as non-porous beads. A whole range of stationary phases, such as reversed phase, hydrophobic interaction, ion exchanger and affinity packings, were designed for application as chemical sensors for biopolymer recognition in adsorptive chromatography. The phase systems are operated in the gradient mode, giving high resolution and high peak capacities. In addition, aqueous liquid-liquid partitioning systems have been developed for the fractionation of proteins and nucleic acids. Size exclusion media complete the set of HPLC variants enabling a discrimination of proteins according to their size and shape in an isocratic elution mode. Basically, protein purification and isolation is a multistage process where-by the HPLC variants are combined in a logistic sequence, utilizing the different selectivities of the phase systems and thus maximising resolution, speed and throughput.     

High-performance membrane chromatography of serum and plasma membrane proteins.

Porous discs made of poly(glycidyl methacrylate) were used for high-performance membrane chromatography (HPMC) of proteins. In model experiments, separations of standard proteins by anion-exchange HPMC using a DEAE disc were carried out. The influences of sample distribution and disc diameter and thickness on separation performance were studied. The separation disc allowed a scaling-up from analytical (diameter 10 mm) to semi-preparative (diameter 50 mm) dimensions. In an application study, separations with anion-exchange and affinity HPMC were carried out using different complex samples such as rat serum and plasma membrane proteins. In all experiments the results on poly(glycidyl methacrylate) discs were comparable to those achieved on adequate high-performance liquid chromatographic (HPLC) columns. However, the separations on HPMC discs could be carried out faster than corresponding separations on HPLC columns. The pressure drop on the discs was low even at high flow-rates. The experiments show that the poly(glycidyl methacrylate) discs used are especially suitable for the isolation of proteins and other biopolymers which occur in a diluted state in complex mixtures.     

高效膜色谱的发展和应用

对新兴的高效膜色谱的基质材料、膜形态、分离机理以及应用进行了综述,并对其用于对映体分离作了展望。共７６篇。     

Analysis of Nonionic Surfactants by High Performance Liquid Chromatography

Abstract

This review discusses the principles of immobilized metal ion affinity chromatography (IMAC) and its applications to protein separations. IMAC functions by binding the accessible electron-donating pendant groups of a protein - such as histidine, cysteine, and tryptophan - to a metal ion which is held by a chelating group covalently attached on a stationary support. A common chelating group is iminodiacetate. The ions commonly used are of borderline or soft metals, such as Cu²⁺, Ni²⁺, Co²⁺, and Zn²⁺. Protein retention in IMAC depends on the number and type of pendant groups which can interact with the metal. The interaction is affected by a variety of independent variables such as pH, temperature, solvent type, salt type, salt concentration, nature of immobilized metal and chelate, ligand density, and protein size. Proteins are usually eluted by a decreasing pH gradient or by an increasing gradient of a competitive agent, such as imidazole, in a buffer. There are still several unresolved issues in IMAC. The exact structures of protein-immobilized metal complexes need to be known so that retention behavior of proteins can be fully understood and sorbent structures can be optimized. Engineering parameters, such as adsorption/desorption rate constants, sorbent capacities, and intraparticle diffusivities, need to be developed for most protein systems. Engineering analysis and quantitative understanding are also needed so that IMAC can be used efficiently for large scale protein separations.     

The Use of Polystyrene Gels in Preparative Recycle-HPLC for the Separation of Structurally Related Molecules

Abstract

This paper deals with the use of polystyrene gels in high performance liquid chromatography for preparative separations of small molecules with very similar structures. The preparative chromatograph, equipped with a recycle device and made in our laboratory, is described. The column set, consisted of three columns packed with low porosity polystyrene gel. The mobile phase was diisopropylether. Three particle sizes (10μ, 20μ, 50μ) were studied for improving the preparative performance. We checked the very high efficiency of our recycling system versus sample load. High sample loadings (up to 100 grams) can be injected when the separation does not require a large number of plates but typical sample loads are 10–20 grams for high performance separations. Some examples of separation of diastereoisomers, configurational isomers or related structure molecules are given. The advantages of our preparative system are discussed.     

The quest for affinity chromatography ligands: are the molecular libraries the right source?

Affinity chromatography separations of proteins call for highly specific ligands. Antibodies are the most obvious approach; however, except for specific situations, technical and economic reasons are arguments against this choice especially for preparative purposes. With this in mind, the rationale is to select the most appropriate ligands from collections of pre‐established molecules. To reach the objective of having a large structural coverage, combinatorial libraries have been proposed. These are classified according to their nature and origin. This review presents and discusses the most common affinity ligand libraries along with the most appropriate screening methods for the identification of the right affinity chromatography selective structure according to the type of library; a side‐by‐side comparison is also presented.     

Reverse Phase High Performance Liquid Chromatography of Human Bence Jones Proteins

Abstract

A high performance liquid chromatography system is presented for analytical and preparative separations of human Bence Jones proteins. The method utilizes 5–7 um macroreticular polystylene resin with bonded hydroxymethyl functional groups, and the proteins are eluted with a linear gradient of an increasing concentration of acetonitorile(10–60%, V/V) in 0.1 % (V/V) trifluoroacetic acid, pH 2.1. By this elution condition, seven X type Bence Jones proteins with molecular weights of 23,600 (monomer)-47,000(dimers) daltons(216–434 amino acids) were eluted within 80 min with the yields of 78%–98%. The method allows a rapid and sharp elution of Bence Jones proteins.     

Enzyme-Amplified Receptor Assay Predictive Model and Analytical Limits

Abstract

A theoretical basis for enzyme amplified receptor assay (ERA) is presented and criteria are established for the general case of any receptor system. Analytical criteria necessary to perform this assay are identified based upon the relevant affinity constants, the concentrations of the enzyme-labelled ligand and receptor, and the analyte.     

Method Development of Enantiomer Separations by Affinity Capillary Electrophoresis,Cyclodextrin Electrokinetic Chromatography and Capillary Electrophoresis-Mass Spectrometry

 Capillary electrophoresis (CE) has become a powerful tool for enantiomer separations during the last decade. Since 1993, the author has investigated enantiomer separations by affinity capillary electrophoresis (affinity CE) with some proteins and by cyclodextrin electrokinetic chromatography (CDEKC) with some charged cyclodextrins (CDs). Many successful enantiomer separations are demonstrated from our study in this review article. In the enantiomer separations by affinity CE, the deterioration of detection     

Chiral copper-chelate complexes alter selectivities in metal affinity protein partitioning

Proteins can be distinguished by exploiting complementarity between a histidine's microenvironment and a metal-chelate ligand in metal-affinity separations. The partitioning behavior of three myoglobins was investigated in aqueous two-phase polyethylene glycol-dextran systems containing polyethylene glycol derivatized with Cu(II) complexes of the L- and D-isomers of methionine and aspartate. TSK chromatographic supports derivatized with the methionine complexes were used to study retention of these proteins in metal-affinity chromatography. In the partitioning studies, the amino acid metal chelates exhibit selectivities for the myoglobins that are different from that of Cu(II)-iminodiacetate. Significant differences in selectivity based on the chiral nature of the amino acid complexes were also observed. The chromatographic selectivities of the chelating ligands exhibit little variation, however, suggesting that interactions occurring in solution but not on a surface play an important role in protein binding to the Cu(II)-amino acid-PEG complexes. In solution, the Cu(II)-amino acid complexes are sensitive probes of the microenvironments of surface histidines. The choice of the metal chelate affinity ligand offers a powerful means by which the selectivity of metal-affinity separations can be altered.     

Thermotropic Liquid Crystalline Side Group Polymers as Stationary Phases in High Performance Liquid Chromatography. II. the Mechanism of Separation

Abstract

Liquid crystalline side group polymers support coated on silica gels have been applied as stationary phases in high performance liquid chromatography. It has been possible to show that also in liquid chromatography, separations based on the mesophase structure can be observed in analogy to gas chromatography. From results of separations in which temperature, flow rate, sample concentration and the solvent strength of the mobile phase were varied, this work derives views on the fundamental mechanisms involved. In addition, it will be shown that different mechanisms are probably involved in the separation of steroids and dinitrobenzene isomers on these stationary phases.     

Protein purification by aminosquarylium cyanine dye‐affinity chromatography

The most selective purification method for proteins and other biomolecules is affinity chromatography. This method is based on the unique biological‐based specificity of the biomolecule–ligand interaction and commonly uses biological ligands. However, these ligands may present some drawbacks, mainly because of their cost and lability. Dye‐affinity chromatography overcomes the limitations of biological ligands and is widely used owing to the low cost of synthetic dyes and to their resistance to biological and chemical degradation. In this work, immobilized aminosquarylium cyanine dyes are used in order to exploit affinity interactions with standard proteins such as lysozyme, α‐chymotrypsin and trypsin. These studies evaluate the affinity interactions occurring between the immobilized ligand and the different proteins, as a reflection of the sum of several molecular interactions, namely ionic, hydrophobic and van der Waals, spread throughout the structure, in a defined spatial manner. The results show the possibility of using an aminosquarylium cyanine dye bearing a N‐hexyl pendant chain, with a ligand density of 1.8 × 10^?2 mmol of dye/g of chromatographic support, to isolate lysozyme, α‐chymotrypsin and trypsin from a mixture. The application of a decreasing ammonium sulfate gradient resulted in the recovery of lysozyme in the flowthrough. On the other hand, α‐chymotrypsin and trypsin were retained, involving different interactions with the ligand. In conclusion, this study demonstrates the potential applicability of ligands such as aminosquarylium cyanine dyes for the separation and purification of proteins by affinity chromatography. Copyright © 2013 John Wiley & Sons, Ltd.     

Affinity monolith chromatography: a review of principles and recent analytical applications

Affinity monolith chromatography (AMC) is a type of liquid chromatography that uses a monolithic support and a biologically related binding agent as a stationary phase. AMC is a powerful method for the selective separation, analysis, or study of specific target compounds in a sample. This review discusses the basic principles of AMC and recent developments and applications of this method, with particular emphasis being given to work that has appeared in the last 5 years. Various materials that have been used to prepare columns for AMC are examined, including organic monoliths, silica monoliths, agarose monoliths, and cryogels. These supports have been used in AMC for formats that have ranged from traditional columns to disks, microcolumns, and capillaries. Many binding agents have also been employed in AMC, such as antibodies, enzymes, proteins, lectins, immobilized metal ions, and dyes. Some applications that have been reported with these binding agents in AMC are bioaffinity chromatography, immunoaffinity chromatography or immunoextraction, immobilized-metal-ion affinity chromatography, dye–ligand affinity chromatography, chiral separations, and biointeraction studies. Examples are presented from fields that include analytical chemistry, pharmaceutical analysis, clinical testing, and biotechnology. Current trends and possible directions in AMC are also discussed.     

亲和色谱中配基的筛选与应用

亲和配基的选择与筛选是发展新的亲和色谱填料或构建一个新的亲和色谱体系所必须解决的首要问题。该文结合作者所在实验室的工作,对配基的选择、筛选与应用方面的一些进展进行了简要评述。作者所在实验室针对特定蛋白质和多肽的多肽亲和配基的筛选,开展了反义肽简并性的研究,发展了基于反义肽的组合化学筛选新方法。与常规的组合合成法相比,该方法简单、快捷、有效,极大地减小了合成和筛选的工作量,降低了筛选后亲和组分结构鉴定的难度。所建立的筛选策略已应用于流感病毒、严重急性呼吸道综合征(SARS)病毒亲和抑制剂的筛选和用于人β-干扰素测定的石英晶体微天平（QCM）生物传感器的构建,均取得了有意义的结果。     

Solid Phase Derivatizations in HPLC: Polymeric Permanganate Oxidations of Alcohols and Aldehydes in HPLC-SPR

Abstract

On-line or off-line oxidations of various alcohols, aldehydes, and ketones can now be performed in conjunction with high performance liquid chromatography (HPLC), utilizing a newly developed polymeric permanganate solid phase reactor (SPR). These derivatization reactions are compatible with most reversed phase and normal phase solvents for HPLC separations, and many of these oxidations can be accomplished in real-time, on-line, at or above room temperature. Such HPLC-SPR approaches for chemical modifications and derivatizations of various oxidizable analytes provide a useful and quite practical newer approach for the HPLC-ultraviolet (UV) detection of appropriate analyte species. Difference chromatography, often with improved UV detection, can be used to confirm the suspected presence of a particular oxidizable analyte in a complex sample matrix. All of these solid phase derivatizations utilize conventional, commercially available HPLC instruments and accessories. These HPLC-SPR oxidation methods for chemical derivatization have also been applied to certain real world samples, in order to demonstrate the overall value and applicability of such analytical approaches.     

Use of surfactant-mediated phase separation (cloud point extraction) with affinity ligands for the extraction of hydrophilic proteins

The feasibility of utilizing a zwitterionic surfactant, 3-(nonyldimethylammonio)propylsulfate, or nonionic surfactant, Triton X-114, mediated phase separation in conjunction with affinity ligands was studied for hydrophilic protein extractions. Below (or above) its critical temperature (so-called cloud point), aqueous solutions of zwitterionic (or nonionic) surfactants separate into two immiscible phases, a surfactant-rich phase and an aqueous phase. Avidin was successfully extracted into the zwitterionic surfactant-rich phase when a small amount of the affinity ligand, N- biotinoyl)dipalmitoyl- l -alpha- phosphatidyl ethanolamine, was added to the system. It was not possible to extract hexokinase into the surfactant-rich phase of the nonionic surfactant, Triton X-114, even if a considerable amount of octyl-beta-d-glucoside was added to the solution as an affinity ligand. In contrast, the use of the zwitterionic surfactant and octyl-beta-d-glucoside as an affinity ligand proved to be effective for the extraction of hexokinase. The hexokinase extraction efficiency was found to depend upon the solution pH and the concentration of the affinity ligand in the system. The results clearly indicate that hydrophilic proteins can be successfully extracted with surfactant mediated phase separations (cloud point extractions) via use of the zwitterionic surfactant, 3-(nonyldimethylammonio)propylsulfate, and appropriate affinity ligands. Some advantages of zwitterionic surfactants in such extractive processes relative to that of nonionic surfactants are delineated.     

Macrocyclic Ligands in Separations

The selectivity of macrocyclic ligands such as crown ethers and cryptands in binding metal and other cations in aqueous and nonaqueous solvents can be exploited to make ion separations. Cations are usually separated by direct interaction with the ligand. In addition, anions associated with the positively charged macrocyclic complexes can be separated in novel separations systems. We have incorporated macrocyclic ligands into high performance ion chromatography, liquid membranes, and solvent extraction separation systems involving coalescence extraction.     

3,3′‐Diamino‐N‐methyldipropylamine as a versatile affinity ligand

Currently, in biomedicine and biotechnology fields, there is a growing need to develop and produce biomolecules with a high degree of purity. To accomplish this goal, new purification methods are being developed looking for higher performance, efficiency, selectivity, and cost‐effectiveness. Affinity chromatography is considered one of the most highly selective methods for biomolecules purification. The purpose of this work is to explore a new type of a structurally simple ligand immobilized onto an agarose matrix to be used in affinity chromatography. The ligand in this study, 3,3′‐diamino‐N‐methyldipropylamine has shown low toxicity and low cost of preparation. Moreover, the ability of the ligand to be used in affinity chromatography to purify proteins and nucleic acids was verified. An increasing sodium chloride gradient, using salt concentrations up to 500 mM, was suitable to accomplish the purification of these biomolecules, meaning that the new support allows the recovery of target biomolecules under mild conditions. Thus, the 3,3′‐diamino‐N‐methyldipropylamine ligand is shown to be a useful and versatile tool in chromatographic experiments, with very good results either for proteins or supercoiled plasmid isoform purification.     

High resolution protein separations using affinity ultrafiltration with small charged ligands

Although the feasibility of affinity ultrafiltration was demonstrated more than 20 years ago, commercial applications have not developed due to the high cost and practical limitations of the large macroligands needed for highly selective separations. The objective of this study was to examine the use of small charged affinity ligands for protein purification by exploiting electrostatic interactions between the charged complex and an electrically-charged membrane. Experiments were performed using bovine serum albumin and ovalbumin with Cibacron Blue as the affinity ligand. Negatively charged versions of a composite regenerated cellulose membrane were generated by covalent attachment of a sulfonic acid functionality. Binding experiments were used to identify appropriate conditions for protein separations. The selectivity for the separation of BSA and ovalbumin was a function of the solution conditions, Cibacron Blue concentration, and membrane charge, with the addition of Cibacron Blue causing a 30-fold increase in selectivity. A diafiltration process was performed at the optimal conditions, giving a BSA product with a purification factor of more than 90-fold and a yield greater than 90%. These results clearly demonstrate the potential of using a small charged affinity ligand for high resolution protein separations.