Oxime esters of 2,6-diazaanthracene-9,10-dione and 4,5-diazafluoren-9-one as photo-induced DNA-cleaving agents

Two series of oxime esters containing the 2,6-diazaanthracene-9,10-dione bis-(O-benzoyloxime) and 4,5-diazafluoren-9-one O-9-benzoyloxime moieties have been synthesized and tested as photo-induced DNA cleaving agents. All these compounds were found to cleave DNA upon irradiation with 312 nm UV light. The structure-activity relationship of these molecules for DNA cleavage was established. A plausible reaction mechanism is also proposed.     

RELAXATION OF SUPERCOILED DNA BY AMINOMETHYL TRIMETHYLPSORALEN AND UV PHOTONS: ACTION SPECTRUM

Abstract— An action spectrum of the relaxation of supercoied plasmid DNA(induction fo the firt single-strand break) by photoactivated 4'-aminomethyl-4, 5',8-trimethylpsoralen(AMT) has been determined using monochormatic UV photons from 254 to 405 nm. The spectrum of AMT-induced plasmid DNA relaxation fits closely with the absorbance spectrum of AMT in the spectral region between 313 nm and 405nm but deviates at wavelengths shorter than 313nm. This asay also reveals that the psoralen photosensitization reaction with DNA also produces piperidinelabile sites. Addition of mannitol and azide partially quenches the supercoil realaxation reaction, evidence for a role of Type II photosensitization pathway.     

IRRADIATION OF CIRCULAR DNA WITH 254 nm RADIATION OR SENSITIZATION IN THE PRESENCE OF Ag+ EVIDENCE FOR UNWINDING BY PHOTOPRODUCTS OTHER THAN PYRIMIDINE DIMERS

Abstract— Structural alterations of DNA irradiated with UV light were analyzed by the agarose gel technique. Relaxed, circular pAT 153 DNA molecules were sensitized by broad band radiation with a maximum at 313 nm in the presence of silver ions or irradiated with 254 nm light in buffer only. In both cases the electrophoretic mobility of DNA topoisomers was altered as a linear function of UV exposure. For DNA irradiated in the sensitized reaction the unwinding angle per site sensitive to Micrococcus luteus pyrimidine dimer endonuclease was found tobe–11.4°. This value is significantly smaller thanthe–14.3° already known for DNA topoisomers irradiated with 254 nm light. The irradiated DNAs were a very good substrate for the Escherichia coli photoreactivating enzyme (PRE). However, the photoenzymic removal of all sites sensitive to the endonuclease specific for pyrimidine dimers was not coupled to a full restoration of the original electrophoretic mobility. Thirty and 23% of the unwinding were still present in the photoreactivated topoisomers and the unwinding angles per pyrimidine dimer were then recalculatedas–10.1°and–8.7° for DNAs irradiated with 254 nm and sensitized, respectively. The limited difference between these two values could result from the different base composition of the pyrimidine dimers generated in the conditions of irradiation used. These results show that the tertiary structure of DNA is measureably altered by UV photodamages other than pyrimidine dimers.     

DNA-PROTEIN CROSSLINKING IN NORMAL HUMAN SKIN FIBROBLASTS EXPOSED TO SOLAR ULTRAVIOLET WAVELENGTHS

Three normal human skin fibroblast cell lines were exposed to the simulated solar UV radiation produced by a fluorescent sunlamp under conditions in which the wavelength components shorter than either 295, 305 or 315 nm were excluded. The level of DNA-protein crosslinks (DPC) was then measured in those cells using the alkaline elution technique either immediately after irradiation or following a 24 h incubation. In each case, cells were exposed to fluences that induce similar levels of DPC. For cells exposed to 10 kJ m(-2) of sunlamp UV > 295 nm, the level of DPC exhibited a 2-5-fold increase following incubation. In contrast, 40-100% of the DPC were removed upon incubation of cells irradiated with either 100 kJ m(-2) of sunlamp UV > 305 nm or 150 kJ m(-2) of sunlamp UV > 315 nm. A major difference between the effects induced by these wavelength regions is that, in addition to DPC, a very high level of pyrimidine dimers is also produced by sunlamp UV > 295 nm, whereas much lower dimer yields result from treatment with either sunlamp UV > 305 nm or sunlamp UV > 315 nm. A potential role for type II DNA topoisomerase in the formation of these DPC resulting from either the change in conformational structure caused by the presence of a high level of dimers or an involvement of this enzyme in dimer excision repair is discussed.     

ULTRAVIOLET LIGHT IRRADIATION OF DEFINED-SEQUENCE DNA UNDER CONDITIONS OF CHEMICAL PHOTOSENSITIZATION

Abstract— The formation of cyclobutane pyrimidine dimers and UV light-induced (6-4) products was examined under conditions of triplet state photosensitization. DNA fragments of defined sequence were irradiated with 313 nm light in the presence of either acetone qr silver ion. UV irradiation in the presence of both silver ion and acetone enhanced the formation of TT cyclobutane dimers, yet no (6-4) photoproducts were formed at appreciable levels. When photoproduct formation was also measured in pyrimidine dinucleotides, only cyclobutane dimers were formed when the dinucleotides were exposed to 313 nm light in the presence of photosensitizer. The relative distribution of each type of cyclobutane dimer formed was compared for DNA fragments that were irradiated with 254, 313, or 313 nm UV light in the presence of acetone. The dimer distribution for DNA irradiated with 254 and 313 nm UV light were very similar, whereas the distribution for DNA irradiated with 313 nm light in the presence of acetone favored TT dimers. Alkaline labile lesions at guanine sites were also seen when DNA was irradiated with 313 nm light in the presence of acetone.     

SELECTIVE DNA THYMINE DIMERIZATION DURING UVA IRRADIATION IN THE PRESENCE OF A SATURATED PYRIDOPSORALEN

Abstract— It has been recently shown that UVA (320–400 nm) irradiation of DNA in the presence of pyridopsoralens induces the formation of thymine cyclobutane dimers in addition to monoadducts. In this work, we measured the potency of a saturated pyridopsoralen to photosensitize DNA, despite its inability to covalently attach to DNA. First, from spectroscopic fluorescence measurements, we have shown that both analogs, saturated and unsaturated pyridopsoralens, namely 4',5'-dihydro-7-methyl-pyrido[3,4-clpsoralen (DH-MePyPs) and 7-methylpyrido[3,4-c]psoralen, exhibit a similar global affinity for DNA. Secondly, we demonstrated, by footprinting experiments, that exposure of a DNA sequence to 365 nm UV radiation in the presence of DH-MePyPs results in selective cyclobutane thymine dimerization. Thymines located in the immediate proximity of the 5'-TA-3' step are exclusively affected and the frequency of this photoprocess depends on flanking sequences. We thus probe a selective thymine dimer photosensitizer. Results are discussed in terms of drug affinity and physical properties of the helix at the binding site.     

Radiation induced DNA strand breaks measured by a modified method of gel scanning

Gel electrophoresis is an effective method for assaying plasmid DNA fractions, and UV lights with long wavelengths such as 315 nm is used to image the gel. In the present work, the sensitivities of detecting the fluorescence emitted from ethidium bromide (EB) stained DNA bands in the gel illuminated with UV lights of various wavelengths were compared. It was found that, in the range 245 to 320 nm, shorter excitation wavelength had higher detection sensitivity, thus 260 nm was selected for further studies. With this excitation light, as little as 0.7 ng DNA was detected. The fluorescence of DNA-EB bands had a good linear response to DNA quantity in a wide range. In addition, measured via this modified method, the yield of DNA strand breaks and the second-order rate coefficient of the reaction between DNA and √OH radical were consistent with many previous studies.     

氯分子束与钛表面激光化学反应动力学

本文采用飞行时间质谱技术测定了在紫外(355nm), 可见(560nm)和近代红外(1064nm)脉冲激光作用下, 氯分子束与Ti表面反应产物的质量分布和速度分布。所得结果表明, 不同波长激光诱导反应的主要产物相同, 有Ti, TiCl, TiCl3和TiCl4。在高能量密度的紫外激光作用下, 首次测得具有很高动能的原生Ti+。各种含Ti氯化物的飞行时间谱, 能满意地用单组分或多组分Maxwell-Boltzmann公式拟合和分析。上述激光诱导气-固表面反应的机理主要由氯分子在Ti表面上的解离吸附,吸附态氯原子在表面上生成TiClx(X=1～4)的连串反应以及激光诱导脱附所组成。近红外激光主要引起热脱附, 而紫外激光的作用还原可能有非热脱附过程。     

DNA DAMAGE AND REPAIR IN HUMAN CELLS EXPOSED TO SUNLIGHT

Cultured human cells were treated with direct sunlight under conditions which minimised the hypertonic, hyperthermic and fixative effects of solar radiation. Sunlight produced similar levels of DNA strand breaks as equitoxic 254 nm UV in two fibroblast strains and a melanoma cell line, but DNA repair synthesis and inhibition of semiconservative DNA synthesis and of DNA chain elongation were significantly less for sunlight-exposed cells. DNA breaks induced by sunlight were removed more rapidly. Thus, the repair of solar damage differs considerably from 254 nm UV repair. Glass-filtered sunlight (> 320 nm) was not toxic to cells and did not induce repair synthesis but gave a low level of short-lived DNA breaks and some inhibition of DNA chain elongation; thymidine uptake was enhanced. Filtered sunlight slightly enhanced UV-induced repair synthesis and UV toxicity; photoreactivation of UV damage was not found. Attempts to transform human fibroblasts using sunlight, with or without phorbol ester, were unsuccessful.     

CHARACTERIZATION OF PHOTOCYCLOADDITION PRODUCTS FROM REACTION BETWEEN THYMIDINE and THE MONOFUNCTIONAL 3-CARBETHOXYPSORALEN

The photochemical reaction of 3-carbethoxypsoralen. a monofunctional furocoumarin. with thymidine was investigated as a model system for its photoaddition to DNA. Near UV irradiation (320 nm > λ > 400 nm) of a mixture of thymidine and 3-carbethoxypsoralen as a dry film gave rise to two main nucleoside diastereoisomers which were isolated by reverse phase high performance liquid chromatography. The structure of these products was assigned on the basis of UV absorption, fluorescence.'H-NMR and plasma desorption mass spectra analysis. The results are consistent with 1:1 C, cycloadducts involving the 5,6 double bond of thymine and the 4', 5'double bond of 3-carbethoxypsoralen. These two cycloadducts of cis-syn stereoconfiguration show opposite circular dichroism suggesting a diastereoisomeric relationship.     

TiO2和ZnO表面CO光催化氧化活性研究

在TiO2和ZnO表面CO光催化氧化研究中发现,365 nm紫外光照下TiO2表面无活性,而ZnO表面却有明显的CO光催化氧化活性.研究表明,主要是由于紫外光照下,ZnO光分解而TiO2没有光分解,从而在表面产生不同吸附形态的氧所致.而且,ZnO表面CO光催化氧化反应活性可在27 h内保持稳定,暗示气相光催化反应中,ZnO不会因为光腐蚀而使其催化活性降低.     

The reaction of water with guanosine radical cation in DNA

Structural analyses of DNA oligonucleotides indicate the presence of strongly bound water molecules in the major and minor grooves. These water molecules may react with guanosine radical cation to form 8-oxo-7,8-dihydroguanine and other oxidation products, which can result in strand scission or other DNA damage. We probed the reaction of guanosine radical cation with water by incorporating alkyl-substituted cytidines and thymidines into anthraquinone-linked DNA duplexes and irradiating them with UV light at 350 nm. The incorporation of these hydrophobic substituents disrupts the DNA spine of hydration and we have observed that these modifications do not affect the trapping or long-distance hopping of radical cations in DNA.     

Novel Visible and Ultraviolet Light Photogeneration of Hydroxyl Radicals by 2-Methyl-4-nitro-quinoline-N-oxide (MNO) and 4, 4'-Dinitro-(2, 2') bipyridinyl-N, N'-dioxide (DBD)

Chemicals that upon absorption of light generate hydroxyl radicals (·OH), free of other damaging species under physiological conditions, are useful tools for the study of the biological effects of ·OH radical and for its utilization for analytical purposes. We report the novel property of 2-methyl-4-nitro-quinoline- N -oxide (MNO) and 4, 4'-dinitro-(2, 2') bipyridinyl-N, N'-dioxide (DBD) to act as photogenerators of ·OH with UV and visible light. Upon irradiation with 360–400 nm light MNO and DBD generate free radicals that convert coumarin carboxylic acid (CCA) to fluorescent 7-OH-CCA; the ·OH radical scavengers dimethylsulfoxide (DMSO) and ethanol eliminate the induction of 7-OH-CCA fluorescence. Upon 400 nm illumination in the presence of MNO, supercoiled plasmid DNA is converted to circular and strand break-age is significantly reduced in the presence of DMSO and completely absent in the absence of MNO. The conversion of CCA to 7-OH-CCA and of supercoiled plasmid to circular DNA are also observed in the absence of oxygen. Taken together, these data indicate that MNO and DBD constitute novel ·OH-generating compounds. Because currently known ·OH-photogenerating compounds require UV illumination (< 360 nm) that also damages DNA and cells directly, the property of MNO to generate ·OH upon 400 nm illumination is advantageous when studies on cells, DNA and other biomolecules are conducted.     

在TiO2上CO的光催化氧化

最近在“氧化的”TiO₂(即表面无氧空位和Ti³⁺)上进行的CO光催化氧化研究发现:室温下,以黑光灯(峰值λ=365nm)光照时,“氧化的”TiO₂无CO催化氧化的活性,但以杀菌灯(峰值λ=253.7nm)光照时,则对CO产生显著的催化活性.参照CO在过渡金属表面的催化氧化机理,对本现象进行了解释:黑光灯照时,O₂在TiO₂表面只生成O_2(a)^-,而O_2(a)^-不能使CO氧化,只有以杀菌灯照时,TiO₂表面产生O_(a)^-,CO氧化反应才能发生.     

Effect of UV irradiation at defined wavelengths on the tertiary structure of double-stranded covalently closed circular DNA

Double-stranded, covalently closed, supercoiled circular DNA from phage fd (replicative form) was irradiated with increasing doses of UV light at 254 nm, 290 nm, 313 nm and 365 nm, and subjected to electrophoresis on agarose slab gels. Increasing the doses of UV light at 254 and 290 nm promotes a smooth reduction in the electrophoretic mobility of the sample, as would be expected if the major effect of light at these two wavelengths were to induce the formation of photoproducts leading to the unwinding of the double strand. At high doses, UV light at 290 nm introduces single-strand breaks (1.2 kJ m-2 per nick per million phosphodiester bonds). UV light at 313 nm promotes an abrupt change in the electrophoretic mobility, as would be expected if the effect of this wavelength were to induce single-strand breaks, leading to the transformation of the supercoiled molecules in their relaxed form (23 kJ m-2 in order to introduce one nick per million phosphodiester bonds). UV light at 365 nm also promotes single-strand breaks in DNA (140 kJ m-2 per nick per million phosphodiester bonds).     

Photoswitchable organocatalysis: using light to modulate the catalytic activities of N-heterocyclic carbenes

A 4,5-dithienylimidazolium salt was found to undergo electrocyclic isomerization upon exposure to UV radiation (λ(irr) = 313 nm) under neutral and basic conditions; subsequent exposure to visible light reversed the reaction. Under ambient light and in the presence of base, the imidazolium species catalyzed transesterifications as well as amidations in a manner similar to those of previously reported N-heterocyclic carbene precatalysts. However, upon UV irradiation to effect the aforementioned photocyclization, the rate of the transesterification reaction between vinyl acetate and allyl alcohol was significantly attenuated (k(vis/UV) = 12.5), as was the rate of the condensation of ethyl acetate with aminoethanol (k(vis/UV) = 100). The rates of these reactions were successfully toggled between fast and slow states by alternating exposure to visible and UV light, respectively, thus demonstrating a rare example of a photoswitchable catalyst that operates via photomodulation of its electronic structure.     

Causes of Cell Death Following Ultraviolet B and C Exposures and the Role of Carotenes

Abstract— Ultraviolet B radiation (wavelength 290–310 nm) does not induce any specific lethal effects in the fungus Phy-comyces blakesleeanus , according to a heterokaryon test that responds to the nature of the lethal damage. This agent is about 10 times less lethal than UVC radiation from germicidal lamps (254 nm), but it kills cells through the same photoreactivable lesions, due to the UV absorption of DNA. Carotenes do not protect Phycomyces against UV damage, either B or C, lethal or not. This was shown by Darwinian competition experiments between strains containing very different carotene concentrations and between strains containing similar concentrations of different carotenes (phytoene, lycopene, β-car-otene). A shading effect of carotenes against UV radiation is likely, but it was insignificant under the conditions of the experiments.     

Synthesis of Distamycin Analogs and Their Interactions with Calf Thymus DNA

Two distamycin analogs (PyPyPy‐γ‐Dp and PyPyPyPy‐γ‐Dp) were synthesized by a haloform reaction and the DCC/HOBT coupling reaction in a ample and fast way without amino protection. By using calf thymus DNA, the interaction between the analogs and DNA duplex was studied by CD, and ITC.