Molecular mechanics modelling of Pt(II) complexes with antitumor activity. Influence of the type and the positions of the ring substituents on the conformational energies and thermodynamic stabilities

Summary The influence of the type and the positions of the ring substituents on the conformational energies and thermodynamic stabilities of a series of Pt(II) complexes of the general formula [1,2-bis(hydroxyphenyl)ethylenediamine]PtL ₂(L ₂=2Cl^–, 2I^–, SO ₄ ^2– ) has been studied by molecular mechanics. The calculations were carried out for the ligand conformations (R,S/S,R)-, (R,S/S,R)-, (R,R)-, and (S,S)-. The obtained energies and thermodynamic stabilities are in agreement with experimental data on the reactivity and antitumor activity of the compounds.

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Molecular Modelling von Pt(II)-Komplexen mit Antitumoraktivität. Einfluß von Art und Position von Substituenten auf Konformationsenergien und thermodynamische Stabilitäten

Zusammenfassung Die konformationellen Energien und thermodynamischen Stabilitäten einer Reihe von Pt(II)-Komplexen mit der allgemeinen Formel [1,2-bis(Hydroxyphenyl) ethylendiamin]PtL ₂(L ₂=2Cl^–, 2I^–, SO ₄ ^2– ) wurden mittels molekularmechanischer Methoden in Abhängigkeit von Art und Stellung der Substituenten an den Phenylringen untersucht. Die Berechnungen wurden für die Ligandenkonformationen (R,S/S,R)-, (R,S/S,R)-, (R,R)- und (S,S)- durchgeführt. Die erhaltenen Energien und Stabilitäten stimmen mit experimentellen Daten über Reaktivität und Antitumoraktivität der Verbindungen überein.

     

Coordination diversity in palladium(II)-picolinamide ligand complexes: structural and quantum chemical studies

The separation of different metal ions can be successfully accomplished by using picolinamide-based ligands. We herein report the first X-ray structure of picolinamide-based ligands of the type C₅H₄NCONR₂ (where R=ⁱC₃H₇ (L1) and ⁱC₄H₉ (L2)) and C₅H₄NCONHR (R=^tC₄H₉ (L3)) with palladium(II) ion. We have synthesized and characterized the structures of two palladium complexes, [PdCl₂(L1)₂] (1) and [PdCl₂L3] (3). In 1, ligand L1 forms a 2?:?1 complex with palladium(II) chloride, whereas in 3, the ligand L3 forms a 1?:?1 complex. Further, in 1, the ligand L1 acts as a monodentate ligand and is bound only through pyridyl-N atom, whereas in 3, the ligand L3 acts as a bidentate chelating ligand and is bound through both the pyridyl-N and amido-O atoms to the Pd(II) center. Electronic structure calculations are carried out to understand the experimental coordination diversity in the Pd complexes. Our calculations clearly suggest that a combination of steric hindrance of the ligand and the electronic effect of metal ions may modulate the coordination preferences.     

QTAIM study of transition metal complexes with cyclophosphazene-based multisite ligands II. Cobalt(II) complexes

[(CoLCl)CoCl₃], [(CoMeLCl)CoCl₃], [(CoLBr)CoBr₃], [CoLBr]⁺ and [CoMeLBr₂] complexes, L = hexakis(2-pyridyloxy)cyclotriphosphazene, MeL = hexakis(4-methyl-2-pyridyloxy)cyclotriphosphazene, in the most stable high spin states are investigated at DFT level of theory using hybrid B3LYP functional. The exchange coupling parameter evaluated using a broken symmetry treatment increases with the ligands mass. Electron density is evaluated in terms of QTAIM (Quantum Theory of Atoms-in-Molecule) topological analysis of electron density. The bonds of central Co atoms with phosphazene nitrogens are shorter, stronger and more polar than with the aromatic pyridine nitrogens and their higher ellipticities may be explained by the π contribution from the phosphazene ring. The atomic charges of phosphazene nitrogens are ca. twice more negative than at the pyridine ones.     

Rhodium(III), palladium(II) and platinum(II) complexes of Bis(o-aminobenzenesulfonyl)ethylenediamine

New complexes of the formulae K₃[RhL ₃]·2 H₂O, [PdL]·H₂O and [M(LH₂)Cl₂] [whereM = Pd, Pt andLH₂ = bis(o-aminobenzenesulfonyl)ethylenediamine] have been prepared and characterized by conductivity measurements, thermogravimetric analysis, X-ray powder patterns and IR, Ligand Field and¹H-NMR spectroscopy.

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Rhodium(III), Palladium(II)- und Platin(II)-Komplexe mit Bis(o-aminobenzolosulfonyl)ethylendiamin (Kurze Mitteilung)

Zusammenfassung Neue Komplexe der allgemeinen Formeln K₃[RhL ₃]·2H₂O, [PdL]·H₂O und [M(LH₂)Cl₂] mitM = Pd, Pt undLH₂ = Bis(o-aminobenzolosulfonyl)ethylendiamin wurden dargestellt und mit Konduktionsmessungen, thermogravimetrischen Analysen, Röntgenstrukturanalysen, IR, Ligandfeld- und¹H-NMR-Spektroskopie charakterisiert.

     

Spectroscopic,anti-bacterial,anti-cancer and molecular docking of Pd(II) and Pt(II) complexes with (E)-4-((dimethylamino)methyl)-2-((4,5-dimethylthiazol-2-yl)diazenyl)phenol ligand

New ligand (E)-4-((dimethylamino)methyl)-2-((4,5-dimethylthiazol-2-yl)diazenyl)phenol (HDmazo) was prepared by the coupling reaction between 4,5-dimethylthiazol-2-amine and 4-((dimethylamino)methyl)phenol. Moreover, the [MCl₂(HDmazo)] and [M(HDmazo)₂] [M^II = Pd and Pt] were prepared using the direct reaction of equivalent molar of HDmazo and Na₂PdCl₄ or K₂PtCl₄. The HDmazo and its complexes were investigated by different spectroscopic techniques. In complexes (1–2) HDmazo ligand behaves as bidentate style through the nitrogen of azo group and nitrogen of thiazole ring towards Pd(II) and Pt(II). Or in a bidentate fashion via the oxygen atom of the hydroxylate group and nitrogen atom of azo group as mono-anion in complexes (3–4). Further, the study of biological activity against four pathogenic bacteria showed that compound (3) exhibited good activity compared to other compounds. Additional the anti-tumor action against A2870 cell lines was screened, and the complexes (1) and (2) displayed good activity with 7.45 ± 0.98 µM and 13.23 ± 1.43 µM, respectively. The binding mechanism of the prepared compounds with EGFR tyrosine kinase, was investigated using molecular docking experiments.     

QTAIM study of transition metal complexes with cyclophosphazene-based multisite ligands I: Zinc(II) and nickel(II) complexes

The metal–ligand bonds in [(ZnCl₂)₂L], [NiLCl]⁺ and two isomers of [NiLCl₂] complexes with multimodal ligand L = hexakis(2-pyridyloxy)cyclotriphosphazene, cyclo-[NP(NC₅H₄O)₂]₃, are investigated at DFT level of theory using hybrid B3LYP functional. Electron density is evaluated in terms of QTAIM (quantum theory of atoms-in-molecule) topological analysis of electron density. The bonds of central transition metal atoms with phosphazene nitrogens are shorter, stronger and more polar than with the aromatic pyridine nitrogens. The atomic charges of phosphazene nitrogens are ca twice more negative than at the pyridine ones. The higher mechanical strain in the five-coordinate metal complexes than in the six-coordinate ones may be concluded.     

Design,synthesis and biological evaluation of a novel platinum(II) complex possessing bioreductive groups for cancer therapy

A Pt(Ⅱ) complex possessing bioreductive groups was constructed and evaluated as a more potent antitumor agent than cisplatin.     

Novel Platinum(II) Complexes with Dipyridyl Containing Chelating Ligands and their Products with the Model Nucleobases 1‐Methylthymine and 1‐Methyluracil

The reactions of [Pt(dpma)(H₂O)₂]²⁺ (dpma = 2,2′‐dipyridylmethylamine) and [Pt(dpk)(H₂O)₂]²⁺ (dpk = 2,2′‐dipyridylketone) with the model nucleobases 1‐methylthymine (1‐MeT) and 1‐methyluracil (1‐MeU) were studied. Reaction products were characterized by ¹⁹⁵Pt NMR spectroscopy and by X‐ray structure analysis. The symmetric dpma and dpk diaqua complexes form dinuclear complexes with 1‐methylthymine, acting as secondary bridging ligand via its N3 and O4 donor atoms. [Pt₂(dpma)₂(1‐MeT)₂](ClO₄)₂ · H₂O ( 5 ) and [Pt₂(dpk)(dpk · H₂O)(1‐MeT)₂](PF₆)₂ · 4 H₂O ( 6 ) both show a head‐to‐head arrangement. Biological tests show a significant in vitro antitumor activity of [Pt(dpk)Cl₂] against the human glioma cell line U 87.     

Molecular docking,HOMO-LUMO and quantum chemical computation analysis of anti-glyoximehydrazone derivatives containing pyrazolone moiety and their transition metal complexes

In this study, in order to obtain biologically active compounds, a series of anti-glyoximehydrazone ligands bearing vic-dioxime, hydrazone, and pyrazole moieties and their (O•••H–O) bridged nickel(II), cobalt(II) and copper(II) metal complexes were prepared. Further, the molecular docking studies were carried out on those ligands and their nickel(II), cobalt(II) and copper(II) metal complexes to analyze the interaction with EGFR Kinase domain complexed with tak-285 (PDB ID: 3POZ) and human androgen receptor T877A mutant (PDB ID:2OZ7). In addition, the compounds were optimized by using B3LYP/6-311G+(d,p) level of Density Functional Theory (DFT) to evaluate the HOMO–LUMO contours and quantum chemical parameters. Also, bioactivity analysis were performed.Metal complexes had higher binding affinities against 3POZ and 2OZ7. The most promising compounds for 3POZ were nickel(II) and copper(II) metal complexes. However, for the 2OZ7 target receptor, cobalt(II) and copper(II) metal complexes were the possible hit compounds. Furthermore, cobalt(II) metal complex of ligand two was found to be the most reactive one among others. Moreover, it had the highest ω which is related to a potent higher electrophilic character. It was determined that all the compounds had moderate bioactivity.In conclusion, nickel(II), cobalt(II), and copper(II) complexes could be powerful hit compounds for anti-cancer drug discovery studies.     

Experimental and quantum chemical studies of structure and vibrational spectra of platinum(II) and palladium(II) thiourea chlorides

Equilibrium geometries of platinum(II) and palladium(II) tetrathiourea dichlorides have been determined by the X-Ray diffraction studies as well as calculated by the Density Functional Theory using the MPW1PW/LanL2DZ functional/basis set. Infrared spectra of the species have also been studied in the 4000–400 cm⁻¹ frequency range both experimentally and theoretically. The experimental and theoretical data remain in satisfactory agreement.     

Synthesis,characterization and catalytic activity of halo-methyl-bis(salicylaldehyde)ethylenediamine cobalt(II) complexes

The synthesis, characterization and catalytic activity of a series of tetra-halo-dimethyl salen and di-halo-tetramethyl-salen ligands are reported in this paper: α,α′-dimethyl-Salen (dMeSalen) (L¹); 3,3′,5,5′-tetrachloro-α,α′-dimethyl-Salen, (tCldMeSalen) (L²); 3,3′-dibromo-5,5′-dichloro-α,α′-dimethyl-Salen, (dCldBrdMeSalen) (L³); 3,3′,5,5′-tetrabromo-α,α′-dimethyl-Salen, (tBrdMeSalen) (L⁴); 3,3′,5,5′-tetraiodo-α,α′-dimethyl-salen, (tIdMeSalen) (L⁵); 3,3′-dichloro-5,5′,α,α′-tetramethyl-Salen (dCltMeSalen) (L⁶); 3,3′-dibromo-5,5′,α,α′-tetramethyl-Salen (dBrtMeSalen) (L⁷); and 3,3′-diiodo-5,5′,α,α′-tetramethyl-Salen (dItMeSalen) (L⁸) (Salen = bis(salicylaldehyde)ethylenediamine). Upon reaction with Co(II) ions, these ligands form complexes with square planar geometry that have been characterized by elemental analysis, cyclic voltammetry, UV–Vis, IR and EPR spectroscopies. In the presence of pyridine the obtained Co(II) complexes were found able to bind reversibly O₂, which was shown by EPR spectroscopy and cyclic voltammetry. They were also found able to catalyze the oxidation of 2,6-di-tert-butylphenol (DtBuP) (9) with formation of 2,6-di-tert-butyl-1,4-benzoquinone (DtBuQ) (10) and 2,6,2′,6′-tetra-tert-butyl-1,1′-diphenobenzoquinone (TtBuDQ) (11). These properties are first influenced by the coordination of pyridine in axial position of the Co(II) ion that causes an increase of the electronic density on the cobalt ion and as a consequence a decrease in the E_1/2 value and an increase of the reducing power of the Co(II) complex. It is noteworthy that, under those conditions the complexes also show a remarkable quasi-reversible behaviour. Second, complex properties are also influenced by the substituents (methyl and halogen) grafted on the aromatic ring and on the azomethynic groups. The donating methyl substituent on the azomethynic groups causes a decrease in the E_1/2 value, whereas the halogen substituents on the aromatic rings have two effects: a mesomeric donating effect that tends to lower the redox potential of the complex, and a steric effect that tends to decrease the conjugation of the ligand and then to increase the redox potential of the Co(II) complex. In pyridine, the steric effect predominates, which causes both an increase of the redox potential and a decrease of the selectivity of the oxidation of phenol 9. As a result of all these effects, it then appears that the best catalysts to realize the selective oxidation of 2,6-di-tert-butyl-phenol (9) by O₂ are the Co complexes of ligands bearing CH₃ donating substituents, Co(dMeSalen) 1 (2CH₃ substituents), and Co-di-halo-tetra-methyl-salen complexes 6, 7 and 8 (4CH₃ substituents), in the presence of pyridine.     

Theoretical and molecular modelling studies on organic transition metal complexes,II. Calculation of the stability constants of bidentate ligands in relation to theIrving-Williams order

The bidentate chelates of the transition elements Mn to Zn with salicylaldoxime, 8-hydroxyquinoline and 8-mercaptoquinoline have been constructed using molecular graphics and the stability constants derived from the calculated reaction enthalpies using an extended CNDO/2 method. The results generally follow theIrving-Williams order except for the mercaptoquinoline where large entropy effects are known to be present experimentally. The influence of substituents on the stability constant of salicylaldoxime is reflected in the calculated value particularly for electron-withdrawing groups.

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Theoretische und Molekülmodellierungs-Studien von organischen Übergangsmetallkomplexen, 2. Mitt.: Berechnung der Stabilitätskonstanten von zweizähnigen Liganden in Relation zurIrving-Williams-Ordnung

Zusammenfassung Die zweizähnigen Chelate der Übergangsmetalle Mn bis Zn mit Salicylaldoxim, 8-Hydroxychinolin und 8-Mercaptochinolin wurden unter Verwendung von molekulargraphischen Methoden und den Stabilitätskonstanten aus den mittels einer erweiterten CNDO/2-Methode ermittelten Reaktionsenthalpien konstruiert. Die Ergebnisse folgen generell derIrving-Williams-Ordnung, mit Ausnahme von 8-Mercaptochinolin, von dem bekannt ist, daß experimentell große Entropieeffekte auftreten. Der Einfluß von Substituenten auf die Stabilitätskonstanten der Salicylaldoximkomplexe spiegelt sich besonders für elektronenabziehende Gruppen in den berechneten Werten deutlich wider.

     

Synthesis and antiproliferative activity of (1R,2R)-N1-(2-butyl)-1,2-cyclohexanediamine platinum(II) complexes with malonate derivatives

Three new platinum(II) complexes of (1R,2R)-N¹-(2-butyl)-1,2-cyclohexanediamine with malonate derivatives as leaving groups have been synthesized and spectrally characterized. They were tested in vitro against four human cancer cell lines. [(1R,2R)-N¹-(2-butyl)-1,2-cyclohexanediamine-N,N′](2-ethylmalonato-O,O′)platinum(II) turned out to be more active (IC₅₀ = 4.65 μM) than oxaliplatin (IC₅₀ = 6.55 μM) against the MCF-7 cell line and is superior to its parent complex, [(1R,2R)-N¹-(2-butyl)-1,2-cyclohexanediamine-N,N′](malonato-O,O′)platinum(II). In addition, agarose gel electrophoresis study revealed that the interaction of the complex with pET22b plasmid DNA had a different behavior from that of cisplatin or oxaliplatin.     

Hydration of platinum(II) complexes: a molecular mechanics study using atom-based force-field parameters

 This work is related to the interaction of water with two platinum(II) complexes, [Pt(NH₃)₄]²⁺ (denoted 1) and trans-[Pt(OH)₂(NH₃)₂] (denoted 2). We have considered two approaches of a water molecule to complexes 1 and 2 along the z-axis normal to the platinum(II) coordination plane: approach I, with the water oxygen oriented towards Pt, and approach II, with one water hydrogen directed towards Pt. Calculations have been performed within a molecular mechanics method based upon the interaction potentials proposed earlier by Claverie et al. and subsequently adjusted to results obtained with symmetry – adapted perturbational theory as well as with supermolecule (up to second-order M?ller–Plesset, MP2) methods. We discuss some possible simplifications of the potentials mentioned. The results relative to the hydration of Pt complexes 1 and 2 following approach I or II are discussed and compared to recent (MP2) ab initio energy–distance curves that we have recently determined. The MP2 calculations have shown that besides exchange–repulsion contributions, which are very similar in all hydrated complexes, approach I is mainly governed by electrostatics, whereas for approach II both electrostatic and dispersion contributions are important. Received: 16 September 1999 / Accepted: 3 February 2000 / Published online: 5 June 2000     

Synthesis,interaction with double-helical DNA and biological activity of new Pt(II) and Pd(II) complexes with phenylglycine

The mononuclear palladium(II) (1) and platinum(II) (2) complexes containing phenylglycine have been synthesized and characterized by elemental analysis, IR spectra, and ¹H NMR spectra. The structure of 1 was determined by X-ray diffractometry. The interaction between the complexes and fish sperm DNA (FS-DNA), adenosine-5′-triphosphate (ATP), and adenine (Ade) were investigated by UV absorption spectra, the interaction mode of the complex binding to DNA was studied by fluorescence spectra and viscometry. The results indicate that the two complexes have different binding affinities to DNA, complex 2 > complex 1. Gel electrophoresis assay demonstrates that the two complexes have the ability to cleave pBR322 plasmid DNA. Cytotoxicity experiments were carried out toward four different cancer cell lines, and 1 shows lower inhibitory efficiency than 2, consistent with the binding affinities towards DNA.     

(Amidomethyl)dimethylsilanol hydrohalides: Synthesis, NMR and IR studies. Characteristic features of the electronic structure from high-resolution X-ray study and quantum chemical calculation

(C,O)-chelate silanol hydrohalides RC(O)NHCH₂SiMe₂OH · HHal (2a,b and 5b), and their precursors, (C,O)-chelate chlorosilanes RC(O)NHCH₂SiMe₂Cl (6a,b) and disiloxanes [RC(O)NHCH₂SiMe₂]₂O (8a,b) (R = Me (a), Ph (b); Hal = Cl (2), Br (5)), were obtained by several routes. The original scheme of hydrolysis of the above chlorides was discussed in detail. X-ray analysis has shown that the silanol hydrohalogenides PhC(O)NHCH₂SiMe₂OH · HX (2b and 5b) in the crystal exist in the form of cation-anion pairs [PhC(O)NHCH₂SiMe₂(OH₂)]⁺ · X⁻ (14b · Cl⁻ and 14b · Br⁻) assembled by H-bonds in a 3D framework. The Si atom in the cation has a trigonal bipyramidal configuration with the oxygen atom of the carbonyl group and protonated hydroxyl exo-substituent in axial positions. The endocyclic Si-O bonds are equal with an average of 1.905 Å while the exocyclic Si-O bonds are 1.979 and 2.009 Å, for Hal = Cl and Br, respectively.Quantum chemical calculations have shown that the cation [PhC(O)NHCH₂SiMe₂(OH₂)]⁺ (14b) is stable only in the crystal. Based on a high-resolution X-ray study and a quantum chemical calculation, it was found that the chemical bonding pattern in the OSiO axial fragment of the cation 14b corresponds to a three-centred four electron interaction. The cation 14b should be considered as a silylium cation stabilized by coordinated H₂O molecules rather than a silyloxonium ion.