Theoretical and Experimental Studies on the Metal Complex of Diethylenetriamino-trioxo-molybdenum(Ⅵ)[MoO3(NH2C2H4NHC2H4NH2)]

For diethylenetriamino-trioxo-molybdenum(VI), density functional theory (DFT) method calculations of the structure, atomic charge distributions, electronic spectra, natural po- pulation analyses and thermodynamic properties at different temperatures have been performed by B3LYP method using LANL2DZ, CEP-121G and CEP-31G basis sets, respectively. The calculated results show that B3LYP/LANL2DZ method can best reproduce the molecular structure. The atomic charge distribution analyses indicate that during forming the complex, the ligand of diethyl- enetriamine donates negative charges to MoO3 and these charges are accepted by molybdenum(VI) atom as well as three oxygen atoms. The electronic spectra calculations indicate that B3LYP/ LANL2DZ results are nearest to experimental data among the three methods and electronic tran- sitions are mainly derived from the contribution of bands π→π*. The calculation of the second order optical nonlinearity was carried out, and the molecular hyperpolarizability was 0.7881*10-30 esu.     

Theoretical studies of molecular structures and properties of platinum (II) antitumor drugs

The molecular structure and vibration spectra of carboplatin were investigated by the different density functional models (mPW1PW, BPV86, HCTH, PBEPBE, LSDA and PBE1PBE) using several basis sets including LANL2DZ, SDD, LANL2MB, CEP-4G, CEP-31G and CEP-121G. The results indicate that LSDA/SDD and LSDA/LANL2DZ levels are clearly superior to all the remaining density functional methods in predicting the structures of carboplatin. Mean absolute deviation between the calculated harmonic and observed fundamental vibration frequencies for each method indicates that PBE1PBE/CEP-121G and PBE1PBE/SDD methods are sufficient to predict vibration spectrum of carboplatin comparing with other DFT methods.     

Density Functional Studies on Isonicotinato Lead(II) Complex [Pb(C5H4NCOO)2]

1 INTRODUCTION Recently, the chemistry of lead is of interest in relation to its toxicity and effects on intelligence in human populations[1~3]. The design of drugs to coun- teract the effects of lead poisoning requires estab- lishing the preferred ligands of Pb(II) and their ste- reochemistry. Consequently, synthesis of chelated- form antidotes for lead(II) ion toxicosis has attracted more and more attention, and numerous reports con- cerning experimental coordination chemistry of lead(…     

Quantum chemical computational studies on 5-(4-bromophenylamino)-2-methylsulfanylmethyl-2H-1,2,3-triazol-4-carboxylic acid ethyl ester

The optimized molecular geometry, vibrational frequencies, and gauge including atomic orbital (GIAO) (1)H and (13)C NMR shift values of 5-(4-bromophenylamino)-2-methylsulfanylmethyl-2H-1,2,3-triazol-4-carboxylic acid ethyl ester have been calculated by using Hartree-Fock (HF) and density functional method (DFT/B3LYP) with 6-31G(d), 6-31G(d,p) and LANL2DZ basis sets. The optimized molecular geometric parameters were presented and compared with the data obtained from X-ray diffraction. In order to fit the calculated harmonic wavenumbers to the experimentally observed ones, scaled quantum mechanics force field (SQM FF) methodology was proceeded. Correlation factors between the experimental and calculated (1)H chemical shift values of the title compound in vacuum and in CHCl(3) solution by using the conductor-like screening continuum solvation model (COSMO) were reported. The calculated results showed that the optimized geometry well reproduces the crystal structure. The theoretical vibrational frequencies and chemical shifts are in very good agreement with the experimental data. In solvent media the energetic behavior of the title compound was also examined by using the B3LYP method with the 6-31G(d) basis set, applying the COSMO model. The obtained results indicated that the total energy of the title compound decreases with increasing polarity of the solvent. Furthermore, molecular electrostatic potential (MEP), natural bond orbital (NBO) and frontier molecular orbitals (FMOs) of the title compound were performed by the B3LYP/LANL2DZ method, and also thermodynamic parameters for the title compound were calculated at all the HF and B3LYP levels.     

Spectroscopic investigations and ab initio computations of the dye Chromotrope 2R

Detailed analysis of the NIR FT-Raman, FT-IR and UV–visible spectra of the dye Chromotrope 2R (C2R) has been performed. The optimized geometry of the dye is theoretically computed with the HF and DFT levels using the standard 6-31G(d) and LANL2DZ basis sets. Optimized geometry and vibrational spectra indicate that the major species in the solid state are the trans form of hydrogen bonded hydrazone tautomer. The effect of H-bonding in stabilizing a particular type of structure is also discussed. The most preferred trans-configuration for its photochemical activity has been demonstrated on the basis of torsional potential energy surface (PES) scan studies. The optimized geometries and calculated vibrational wavenumbers are evaluated via comparison with experimental values. Electronic spectra are in accordance with the nature of the electronic transitions predicted by time-dependent B3LYP/DZ calculations.     

Quantum-chemical,spectroscopic and X-ray diffraction studies on nickel complex of 2-hydroxyacetophenone thiosemicarbazone with triphenylphospine

Reaction of 2-hydroxyacetophenone thiosemicarbazone with [Ni(PPh₃)₂Cl₂] in optimized conditions afforded a mixed ligand complex with an isolated triphenylphosphine molecule. The structure was characterized by elemental analysis, IR, NMR and UV–Vis. spectroscopies and single crystal X-ray diffraction technique. In addition, the molecular geometry, vibrational frequencies and gauge including atomic orbital (GIAO) ¹H and ¹³C NMR chemical shift values of the title compound in the ground state have been calculated using the density functional theory (DFT/B3LYP) method with the 6-31G(d,p) basis set for the C, N, O, S, P, H atoms and LANL2DZ pseudo-potential for the Ni atom, and compared with the experimental data. Besides, atomic charge distributions, molecular electrostatic potential and frontier molecular orbitals (FMO) analysis of the title compound were investigated by theoretical calculations. The thermodynamic properties of the compound at different temperatures have been calculated and corresponding relations between the properties and temperature have also been obtained. Atomic charge distributions indicate that during forming the title compound, the free ligand of thiosemicarbazone ion transfers their negative charges to central Ni(II) ion. The effect of different solvents (chloroform, methanol and water) on the geometry, vibrational frequencies, total energies and dipole moments was studied using the density functional theory (DFT/B3LYP) method by applying the Onsager and the Polarizable Continuum Model (PCM).     

Vibrational assignments of 2-iodopyridine

A review of the vibrational assignments for 2-iodopyridine has been proposed based on the FT-Raman (3500-50cm(-1)) and IR (4000-400cm(-1)) spectral measurements. Equilibrium geometries and vibrational frequencies have been computed from a variety of electronic structure methods: the ab initio (RHF), six DFT (BLYP, BP86, B3LYP, B3P86, B3PW91 and SVWN) and MP2 methods using 3-21G*, LANL2DZ and DGDZVP basis sets. A normal coordinate analysis has been carried out: the normal modes and their couplings are characterized in terms of potential energy distributions (PEDs). The comparison of assignments for pyridine and halopyridines shows that several of the normal modes arise from coupled vibrations in 2-iodopyridine. The BP86 and B3LYP methods with LANL2DZ basis set have performed reasonably well in reproducing the observed spectra, demonstrating that the LANL2DZ basis set (with effective core potential representations of electrons near the nuclei for post-third row atoms) is suitable for 2-iodopyridine.     

Copper(II) and cobalt(II) complexes of 2,6-diacetylpyridine bis(<Emphasis Type="Italic">O</Emphasis>-methyloxime): A theoretical investigation

The molecular geometries and vibrational frequencies of the title compounds in the ground state are calculated using the Hartree-Fock (HF) and density functional theory (DFT/B3LYP) methods with the LANL2DZ basis set and compared with the experimental data. The calculated results show that the optimized geometries can well reproduce the crystal structural parameters, and the theoretical vibrational frequencies show good agreement with the experimental values. The energetic behavior of the title compounds in solvent media is examined using the B3LYP method with the LANL2DZ basis set by applying the Onsager and polarizable continuum model (PCM). In addition, molecular electrostatic potential (MEP) and frontier molecular orbital (FMO) analyses of the title compounds are investigated by theoretical calculations.     

Electronic structure and vibrational spectra of X20H20 (X=C, Si, Ge, Sn): A theoretical study

Optimized geometries, HOMO–LUMO gaps, vertical ionization potentials and electron affinities are obtained using HF, and B3LYP methods with 6-311G** basis set for C₂₀H₂₀, Si₂₀H₂₀ and Ge₂₀H₂₀. For germanium and tin analogues, B3LYP calculations are performed with LANL2DZ effective core potential. Electron correlation is included by doing MP2 calculation. The harmonic frequencies of all the compounds are obtained using B3LYP with 6-311G** and/or LANL2DZ basis sets. The force field and vibrational spectra are analyzed and 74 symmetry unique non-redundant local force constants are evaluated. Probable assignments are proposed for all the fundamentals based on the potential energy distribution.     

Comparison of DFT methods for molecular structure and vibration spectra of ofloxacin calculations

Comparison of the performance of different density functional theory (DFT) methods at various basis sets in predicting molecular and vibration spectra of ofloxacin was reported. The methods employed in this study comprise six functionals, namely, mPW1PW91, HCTH, LSDA, PBEPBE, B3PW91 and B3LYP. Different basis sets including LANL2DZ, SDD, LANL2MB, 6-31g, 6-311g and 3-21g were also examined. Comparison between the calculated and experimental data indicates that the mPW1PW91/6-311g level afford the best quality to predict the structure of ofloxacin. The results also indicate that B3LYP/LANL2DZ level show better performance in the vibration spectra prediction of ofloxacin than other DFT methods.     

Interactions of N-acetyl-l-cysteine with metals (Ni2+, Cu2+ and Zn2+): an experimental and theoretical study

In recent years, interactions of metal ions with amino acid derivatives have been studied extensively due to their immense importance in the life-supporting processes. Here, we report the synthesis of three metal (Ni²⁺, Cu²⁺, and Zn²⁺) complexes of N-acetyl-l-cysteine (NAC) using a solvent-free solid-state method. Characterization of the complexes by elemental analyses, molar conductance, SEM, infrared and electronic absorption spectra reveals that the metal ions bind to the NAC molecules in 1:2 molar ratio (metal:ligand) via the S-atoms. Theoretical calculations are carried out using the B3LYP hybrid functional in combination with 6-31++G(d,p) and LANL2DZ basis sets to investigate the effects of metal coordination on the backbone structural features of NAC and geometry about the α-carbon atom. The molecular geometries of NAC as well as its metal complexes are fully optimized in gas phase without applying any geometrical constraint, and a second derivative analysis confirms that all the optimized geometries are true minima. TD-DFT single-point calculations are performed in aqueous phase to obtain the theoretical λ _max values. The gas-phase interaction enthalpies (metal ion binding affinities), Gibbs energies, HOMO/LUMO energies as well as their energy gaps, rotational constants, dipole moments, and theoretically predicted vibrational spectra of all the reaction species are also calculated and thoroughly analyzed. Most of the experimental results are well reproduced by the B3LYP level of calculations. Metal ion coordination to NAC modifies its backbone structural features as well as the geometry about the α-carbon atom.     

Theoretical and Experimental Studies on a Metallorganic Complex of (Isopropylxanthato)(Phenyl)Mercury(I) [Hg(I)(C<Subscript>6</Subscript>H<Subscript>5</Subscript>)(C<Subscript>4</Subscript>H<Subscript>7</Subscript>OS<Subscript>2</Subscript>)]

The title compound, (isopropylxanthato)(phenyl)mercury(I), was synthesized and characterized by elemental analysis, IR and thermogravimetric analysis. Density functional theory (DFT) method calculations were performed at B3LYP/CEP-121G and B3LYP/CEP-31G levels of theory, respectively. Vibrational frequencies were predicted, assigned, compared with the experimental values, and they are supported each other. The calculated results show that the strength of bond Hg—C is stronger than that of Hg—S, which is good agreement with the experimental data. The calculations of the second order optical nonlinearity and electronic absorption spectra are also performed.     

DFT/TDDFT studies on the electronic structures and spectral properties of rhenium(I) pyridinybenzoimidazole complexes

The electronic structures and spectral properties of three Re(I) complexes [Re(CO)3XL] (X = Br, Cl; L = 1-(4-5'-phenyl-1,3,4-oxadiazolylbenzyl)-2-pyridinylbenzoimidazole (1), 1-(4-carbazolylbutyl)-2-pyridinylbenzoimidazole (2), and 2-(1-ethylbenzimidazol-2-yl)pyridine (3)) were investigated theoretically. The ground and the lowest lying triplet excited states were fully optimized at the B3LYP/LANL2DZ and CIS/LANL2DZ levels, respectively. TDDFT/PCM calculations have been employed to predict the absorption and emission spectra starting from the ground and excited state geometries, respectively. The lowest lying absorptions were calculated to be at 481, 493, and 486 nm for 1-3, respectively, and all have the transition configuration of HOMO-->LUMO. The lowest lying transitions can be assigned as metal/ligand-to-ligand charge transfer (MLCT/LLCT) character for 1, ligand-to-ligand charge transfer (LLCT) character for 2, and mixed MLCT/LLCT and intraligand pi-->pi* charge transfer (ILCT) character for 3. The emission of 1 at 551 nm has the MLCT/(3)LLCT character, 2 has the (3)MLCT/(3)LLCT character at 675 nm, and the 651 nm transition of 3 has the character of (3)MLCT/(3)LLCT/(3)ILCT. Ionization potentials (IP) and electron affinities (EA) calculations show that the comparable EA and smaller IP values and the relatively balanceable charges transfer ability of 2 with respect to 1 and 3 result in the higher efficiency of OLEDs. The calculated results show that the absorption and emission transition character and device's efficiency can be changed by altering the ancillary ligands.     

Investigation of structural and biological properties of N-heterocyclic carbene silver(I) and palladium(II) complexes

abstract

Computational investigations were done on bis(1-allyl-3-benzyl-2,3-dihydro-1H-benzo[d]imidazol-2-yl)silver(I), bis(1-benzyl-3-butyl-2,3-dihydro-1H-benzo[d]imidazol-2-yl)silver(I), bis(1-allyl-3-benzyl-2,3-dihydro-1H-benzo[d]imidazol-2-yl)dibromidepalladium(II), and bis(1-benzyl-3-butyl-2,3-dihydro-1H-benzo[d]imidazol-2-yl)dibromidepalladium(II) complexes. Related complexes were optimized at different six calculation levels which are HF/6-31G(LANL2DZ), HF/6-31G(d,p)(LANL2DZ), B3LYP/6-31G(LANL2DZ), B3LYP/6-31G(d,p)(LANL2DZ), M062X/6-31G(LANL2DZ) and M062X/6-31G(d,p)(LANL2DZ) levels in vacuo. IR and NMR spectrum are calculated and examined in detail. Energy diagram of molecular orbitals, contour diagram of frontier molecular orbitals, molecular electrostatic potential maps and the harmonic surface of related molecules are examined in detail. Finally, interactions between mentioned complexes and related proteins (1BNA, 1JNX, and 2ING) are investigated in detail. As a result, it is found that biological and anti-cancer properties of silver N-heterocyclic carbene complexes are higher than those of palladium complexes.     

Comparative studies on the structures,infrared spectrum,and thermodynamic properties of phthalocyanine using ab initio Hartree–Fock and density functional theory methods

The molecular structure, vibrational spectrum, standard thermodynamic functions, and enthalpy of formation of free base phthalocyanine (Pc) have been studied using the density functional theory B3LYP procedure, as well as the ab initio Hartree–Fock method. Various basis sets 3‐21G, 6‐31G*, and LANL2DZ have been employed. The results obtained at various levels are discussed and compared with each other and with the available experimental data. It is shown that calculations performed at the Hartree–Fock level cannot produce a reliable geometry and related properties such as the dipole moment of Pc and similar porphyrin‐based systems. Electron correlation must be included in the calculations. The basis set has comparatively less effect on the calculated results. The results derived at the B3LYP level using the smaller 3‐21G and LANL2DZ basis sets are very close to those produced using the medium 6‐31G* basis set. The geometry of Pc obtained at the B3LYP level has D_2h symmetry and the diameter of the central macrocycle is about 4 Å. The enthalpy of formation of Pc in the gas phase has been predicted to be 1518.50 kJ/mol at the B3LYP/6‐311G(2d,2p)//B3LYP/6‐31G* level via an isodesmic reaction. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Density functional calculation of the structure and electronic properties of Cu(n)O(n) (n = 1-8) clusters

Ab initio simulations and calculations were used to study the structures and stabilities of copper oxide clusters, Cu(n)O(n) (n = 1-8). The lowest energy structures of neutral and charged copper oxide clusters were determined using primarily the B3LYP/LANL2DZ model chemistry. For n ≥ 4, the clusters are nonplanar. Selected electronic properties including atomization energies, ionization energies, electron affinities, and Bader charges were calculated and examined as a function of n.     

Sn和Pb单掺杂Al4小团簇的理论研究

在CCSD(T)/aug-cc-pVTZ&;CEP-121G//B3LYP/6-311+G(d)&;LANL2DZ水平上, 研究了由更高周期的Sn和Pb单掺杂Al4团簇形成的五原子含铝体系XAl4(X=Sn, Pb), 确定了体系的低能异构体, 分析了关键异构体的结构和稳定性. 研究结果表明, 与SiAl4及GeAl4的基态平面四配位Si/Ge结构所不同, 等价电子的SnAl4和PbAl4体系的基态结构不是平面四配位Sn/Pb, 而是平面四配位Al, 其中杂原子Sn/Pb采取二配位方式, 此外, Sn/Pb采取三配位方式的非平面结构的稳定性也要优于平面四配位Sn/Pb结构.     

Structures and properties of 1,8,15,22-tetrasubstituted phthalocyaninato-lead complexes: the substitutional effect study based on density functional theory calculations

Density functional theory (DFT) and time-dependent DFT calculations were carried out to comparatively describe the molecular structures, molecular orbital energy gaps, atomic charges, infrared (IR) and Raman spectra, and UV-vis spectra of PbPc (1), PbPc(alpha-OC2H5)4 (2), and PbPc(alpha-OC5H11)4 (3) {Pc2- = dianion of phthalocyanine; [Pc(alpha-OC2H5)4]2- = dianion of 1,8,15,22-tetra-ethoxyphthalocyanine; [Pc(alpha-OC5H11)4]2- = dianion of 1,8,15,22-tetrakis(3-pentyloxy)phthalocyanine}. The calculated structural data of compounds 1 and 3 and the simulated IR and UV-vis spectra of 3 are compared with X-ray crystallography molecular structures and the experimental absorption spectra respectively to verify the performance of the B3LYP method and the LANL2DZ basis set. Substitution of bulky alkoxy groups at the nonperipheral positions of the phthalocyanine ring adds obvious effect to the molecular structure of phthalocyaninato lead compounds by deflecting the isoindole units in the direction that the isoindole units extends and distorting them in the C4 axis direction due to the steric hindrance. Both the calculated IR and UV-vis absorption spectra of 3 correspond well with the experimental results.     

Green's function formalism coupled with Gaussian broadening of discrete states for quantum transport: application to atomic and molecular wires

A Green's function formalism incorporating broadened density of states (DOS) is proposed for the calculation of electrical conductance. In cluster-molecule-cluster systems, broadened DOS of the clusters are defined as continuous DOS of electrodes and used to calculate Green's function of electrodes. This approach combined with density functional theory is applied to the electrical transmission of gold atomic wires and molecular wires consisting of benzene-1,4-dithiolate, benzene-1,4-dimethanethiolate, 4,4(')-bipyridine, hexane dithiolate, and octane dithiolate. The B3LYP, B3PW91, MPW1PW91, SVWN, and BPW91 functionals with the LANL2DZ, CEP, and SDD basis sets are employed in the calculation of conductance. The width parameter was successfully determined to reproduce the quantum unit of conductance 2e(2)/h in gold atomic wires. The combination of the B3LYP hybrid functional and the CEP-31G basis set is excellent in reproducing measured conductances of molecular wires by Tao et al. [Science 301, 1221 (2003); J. Am. Chem. Soc. 125, 16164 (2003); Nano Lett. 4, 267 (2004)].     

DFT calculation of the chromyl nitrate, CrO2(NO3)2 The molecular force field

We have carried out a structural and vibrational theoretical study for chromyl nitrate. The density functional theory has been used to study its structure and vibrational properties. The geometries were fully optimised at the B3LYP/Lanl2DZ, B3LYP/6-31G* and B3LYP/6-311++G levels of theory and the harmonic vibrational frequencies were evaluated at the same levels. The calculated harmonic vibrational frequencies for chromyl nitrate are consistent with the experimental IR and Raman spectra in the solid and liquid phases. These calculations gave us a precise knowledge of the normal modes of vibration taking into account the type of coordination adopted by nitrate groups of this compound as monodentate and bidentate. We have also made the assignment of all the observed bands in the vibrational spectra for chromyl nitrate. The nature of the Cr-O and Cr<--O bonds in the compound were quantitatively investigated by means of Natural Bond Order (NBO) analysis. The topological properties of electronic charge density are analysed employing Bader's Atoms in Molecules theory (AIM).