Application of Elimination Voltammetry to the Resolution of Adenine and Cytosine Signals in Oligonucleotides II. Hetero‐Oligodeoxynucleotides with Different Sequences of Adenine and Cytosine Nucleotides

Elimination voltammetry with linear scan (EVLS) was applied to the resolution of reduction signals of adenine (A) and cytosine (C) residues in short synthetic hetero‐oligodeoxynucleotides (ODNs) with different sequences of A and C. The EVLS evaluation required linear sweep voltammograms measured on a hanging mercury drop electrode (HMDE) at different scan rates. Compared to linear sweep voltammetry (LSV) and usual voltammetric methods the EVLS is capable of resolving the overlapped A and C signals, specifically by using the elimination function which eliminates the charging and kinetic currents (I_c, I_k) and conserves the diffusion current (I_d). Since for an adsorbed electroactive substance this elimination function yields a well readable peak–counterpeak signal, the adsorptive stripping (AdS) procedure was favorably used. The adsorption of ODNs was carried out at ?0.1 V for accumulation time of 120 s under stirring. It was found that heights and potentials of LSV signals were affected by ODNs concentrations, pH, scan rates, time of accumulation, and stirring speed during the adsorption. While on LSV curves the only one reduction peak of A and C residues was observed in all ODNs, the EVLS yielded two separated peaks in dependence on A, C sequences and pH. Our results showed that the EVLS in connection with the AdS procedure is a useful tool for qualitative and quantitative studies of short ODNs and a promising sensitive method for the development of electrochemical sensor following the ODN sequences.     

A Screening Protocol for Exploring Loop Length Requirements for the Formation of a Three Cytosine-Cytosine+ Base-Paired i-Motif

DNA sequences containing at least four runs of repetitive cytosines can fold into tetra-helical structures called i-Motifs (iMs). The interest in these DNA secondary structures is increasing due to their therapeutical and technological applications. Still, limited knowledge of their folding requirements is currently available. We developed a novel step-by-step pipeline for the systematic screening of putative iM-forming model sequences. Focusing on structures comprising only three cytosine-cytosine⁺ base pairs, we investigated what the minimal lengths of the loops required for formation of an intra-molecular iM are. Our data indicate that two and three nucleotides are required to connect the strands through the minor and majorgrooves of the iM, respectively. Additionally, they highlight an asymmetric behavior according to the distribution of the cytosines. Specifically, no sequence containing a single cytosine in the first and third run was able to fold into intra-molecular iMs with the same stability of those formed when the first and the third run comprise two cytosines. This knowledge represents a step forward toward the development of prediction tools for the proper identification of biologically functional iMs, as well as for the rational design of these secondary structures as technological devices.     

Voltammetric Label‐free Detection of DNA Hypermethylation Using Polypyrrole‐modified Microelectrode Array

An alternative strategy for the label‐free electrochemical detection of DNA hypermethylation using a microelectrode array as an oligodinucleotide (ODN) detector is presented. It relies on the oligonucleotide dependent electrostatic affinity interaction firstly with unmethylated ODN and then follow‐up with methylated DNA. The methylated cytosine status is quantified by monitoring the relative change in the exchange current at the ODN‐detector before and after the bisulfite treated DNA samples. This novel aproach displays unique advantages such as small working volumes of the analytes, low damage to DNA samples, easy integration of oligonucleides on the detector and signal evaluation.     

Determination of Rutin in Green Tea Infusions Using Square‐Wave Voltammetry with a Rigid Carbon‐Polyurethane Composite Electrode

This paper presents a comparative study on the electrochemical behavior of the flavonoid rutin on a rigid carbon‐polyurethane composite electrode and on a glassy carbon electrode. The electrochemical oxidation reaction of rutin was found to be quasireversible and affected by adsorption on the electrode surface. A square‐wave voltammetric method was developed for determination of rutin in green tea infusion samples using the RCPE electrode and data treatment by a deconvolution procedure. The detection limit achieved in buffered solutions was 7.1×10^?9 mol L^?1 using the RCPE and 1.7×10^?8 mol L^?1 using the GC electrode the average reproducibility for five determinations being 3.5%.     

Structural Basis for the Identification of an i‐Motif Tetraplex Core with a Parallel‐Duplex Junction as a Structural Motif in CCG Triplet Repeats

CCG triplet repeats can fold into tetraplex structures, which are associated with the expansion of (CCG)_n trinucleotide sequences in certain neurological diseases. These structures are stabilized by intertwining i‐motifs. However, the structural basis for tetraplex i‐motif formation in CCG triplet repeats remains largely unknown. We report the first crystal structure of a CCG‐repeat sequence, which shows that two dT(CCG)₃A strands can associate to form a tetraplex structure with an i‐motif core containing four C:C⁺ pairs flanked by two G:G homopurine base pairs as a structural motif. The tetraplex core is attached to a short parallel‐stranded duplex. Each hairpin itself contains a central CCG loop in which the nucleotides are flipped out and stabilized by stacking interactions. The helical twists between adjacent cytosine residues of this structure in the i‐motif core have an average value of 30°, which is greater than those previously reported for i‐motif structures.     

Electrochemical Analysis of Acrylamide Using Screen‐Printed Carboxylated Single‐Walled Carbon Nanotube Electrodes

Acrylamide (AA) was electrochemically detected and quantified by means of its voltammetric response on carboxylic modified Single‐Walled Carbon Nanotube Screen Printed Electrodes (COOH‐SWCNT‐SPEs). The electroreduction signal of AA was proportional to AA concentration at low values (below 300 µM) and the observed sensitivity was explained in terms of AA adsorption on the COOH‐SWCNT‐SPEs that was demonstrated using the electrochemical response of [Fe(CN)₆]^3? and [Fe(CN)₆]^4? and Raman spectroscopy experiments. In order to test the suggested analytic approach (LOD of 0.03 µM, LOQ of 0.04 µM), detection and quantification of AA in fried potatoes was carried out using the proposed electrochemical method and HPLC. Both techniques showed similar contents of AA.     

Electrochemical and Spectroscopic Behaviour of Bis(2‐mercaptopyridine‐N‐oxide)oxovanadium(IV)

The complex [VO(MPO)₂] (MPO = deprotonated 2‐mercaptopyridine N‐oxide) was synthesized and characterized by IR spectroscopy. Its electrochemical behaviour was investigated by cyclic voltammetry in different organic solvents. The V^IV/V^V and V^IV/V^III couples could be identified. The nature of the electroactive species is strongly dependent on the solvent. The results are discussed in terms of a reaction mechanism describing the characteristics of the electron transfer processes and the involved chemical reactions, and the stability of the complex in each solvent was also determined. The electronic spectra of the investigated solutions gave additional support to the proposed mechanisms.     

Structural varieties of selectively mixed G‐ and C‐rich short DNA sequences studied with electrospray ionization mass spectrometry

Short guanine(G)‐repeat and cytosine(C)‐repeat DNA strands can self‐assemble to form four‐stranded G‐quadruplexes and i‐motifs, respectively. Herein, G‐rich and C‐rich strands with non‐G or non‐C terminal bases and different lengths of G‐ or C‐repeats are mixed selectively in pH 4.5 and 6.7 ammonium acetate buffer solutions and studied by electrospray ionization mass spectrometry (ESI‐MS). Various strand associations corresponding to bi‐, tri‐ and tetramolecular ions are observed in mass spectra, indicating that the formation of quadruplex structures is a random strand by strand association process. However, with increasing incubation time for the mixtures, initially associated hybrid tetramers will transform into self‐assembled conformations, which is mainly driven by the structural stability. The melting temperature values of self‐assembled quadruplexes suggest that the length of G‐repeats or C‐repeats shows more significant effect on the stability of quadruplex structures than that of terminal residues. Accordingly, we can obtain the self‐associated tetrameric species generated from the mixtures of various homologous G‐ or C‐strands efficiently by altering the length of G‐ or C‐repeats. Our studies demonstrate that ESI‐MS is a very direct, fast and sensitive tool to provide significant information on DNA strand associations and stoichiometric transitions, particularly for complex mixtures. Copyright © 2016 John Wiley & Sons, Ltd.     

Carbon‐Nanotube‐Mediated Electrochemical Transition in a Redox‐Active Supramolecular Hydrogel Derived from Viologen and an l‐Alanine‐Based Amphiphile

A two‐component hydrogelator (16‐A)₂‐V²⁺ , comprising an l ‐alanine‐based amphiphile ( 16‐A ) and a redox‐active viologen based partner ( V²⁺ ), is reported. The formation the hydrogel depended, not only on the acid‐to‐amine stoichiometric ratio, but on the choice of the l ‐amino acid group and also on the hydrocarbon chain length of the amphiphilic component. The redox responsive property and the electrochemical behavior of this two‐component system were further examined by step‐wise chemical and electrochemical reduction of the viologen nucleus (V²⁺/V⁺ and V⁺/V⁰). The half‐wave reduction potentials (E_1/2) associated with the viologen ring shifted to more negative values with increasing amine component. This indicates that higher extent of salt formation hinders reduction of the viologen moiety. Interestingly, the incorporation of single‐walled carbon nanotubes in the electrochemically irreversible hydrogel (16‐A)₂‐V²⁺ transformed it into a quasi‐reversible electrochemical system.     

Impedimetric DNA‐Based Biosensor for Silver Ions Detection with Hemin/G‐Quadruplex Nanowire as Enhancer

A DNA‐based biosensor was reported for detection of silver ions (Ag⁺) by electrochemical impedance spectroscopy (EIS) with [Fe(CN)₆]^4?/3? as redox probe and hybridization chain reaction (HCR) induced hemin/G‐quadruplex nanowire as enhanced label. In the present of target Ag⁺, Ag⁺ interacted with cytosine‐cytosine (C? C) mismatch to form the stable C? Ag⁺? C complex with the aim of immobilizing the primer DNA on electrode, which thus triggered the HCR to form inert hemin/G‐quadruplex nanowire with an amplified EIS signal. As a result, the DNA biosensor showed a high sensitivity with the concentration range spanning from 0.1 nM to 100 µM and a detection limit of 0.05 nM.     

Non‐Innocent Ligand Effects on Low‐Oxidation‐State Indium Complexes

Attempts to coordinate neutral ligands to low oxidation state indium centers are often hindered by disproportionation pathways that produce elemental indium and higher oxidation state species. In contrast, we find that reactions of the salt, InOTf (OTf=trifluoromethanesulfonate), with α‐diimine ligands yielded intensely colored compounds with no evidence of decomposition. X‐ray structural analysis of InOTf ? ^MesDAB^Me (^MesDAB^Me=N,N‐dimesityl‐2,3‐dimethyl‐diazabutadiene; 1 ) reveals a discrete molecular compound with a pyramidal coordination environment at the indium center, consistent with the presence of a stereochemically active lone pair of electrons on indium and a neutral diazabutadiene chelate ligand. The use of the less‐electron‐rich ^MesDAB^H ligand (^MesDAB^H=N,N‐dimesityl‐diazabutadiene) engenders dramatically different reactivity and produces a metallopolymer (InOTf ? ^MesDAB^H)_∞ ( 2 ) linked via C? C and In? In bonds. The difference in reactivity is rationalized by cyclic voltammetry and DFT studies that suggest more facile electron transfer from In^I to the ^MesDAB^H and bis(aryl)acenaphthenequinonediimine (BIAN) ligands. Solution EPR spectroscopy indicates the presence of non‐interacting ligand‐based radicals in solution, whereas solid‐state EPR studies reflect the presence of a thermally accessible spin triplet consistent with reversible C? C bond cleavage.     

Influence of the Chain Length of Alkanethiols in Self‐Assembled Submonolayers on the Electrochemical Response of Aromatic Amine Mixtures

Alkanethiols, such as di‐n‐octadecyldisulfide, octanethiol, and ethanethiol, have been employed for self‐assembled monolayers on a gold electrode to study the influence of their chain length on the electrochemical response of aniline and 4‐aminobiphenyl. The responses of individual solutions and mixtures of both compounds show that the organization of the submonolayer built can improve the selectivity in the electrochemical analysis of those aromatic amines. The use of C8 10^?2 M allows the analysis of 4‐aminobiphenyl avoiding the aniline response. A better resolution for the analysis of those amine mixtures was obtained if a C18 10^?6 M modified gold electrode was used instead of an unmodified one.     

Probing DNA Mismatched and Bulged Structures by Using 19F NMR Spectroscopy and Oligodeoxynucleotides with an 19F‐Labeled Nucleobase

In this study, DNA local structures with bulged bases and mismatched base pairs as well as ordinary full‐matched base pairs by using ¹⁹F NMR spectroscopy with ¹⁹F‐labeled oligodeoxynucleotides (ODNs) were monitored. The chemical shift change in the ¹⁹F NMR spectra allowed discrimination of the DNA structures. Two types of ODNs possessing the bis(trifluoromethyl)benzene unit (F‐unit) at specified uridines were prepared and hybridized with their complementary or noncomplementary strands to form matched, mismatched, or bulged duplexes. By using ODN F1, in which an F‐unit was connected directly to a propargyl amine‐substituted uridine, three local structures, that is, full‐matched, G–U mismatch, and A‐bulge could be analyzed, whereas other structures could not be discriminated. A molecular modeling study revealed that the F‐unit in ODN F1 interacted little with the nucleobases and sugar backbone of the opposite strand because the linker length between the F‐unit and the uridine base was too short. Therefore, the capacity of ODN F1 to discriminate the DNA local structures was limited. Thus, ODN F2 was designed to improve this system; aminobenzoic acid was inserted between the F‐unit and uridine base so the F‐unit could interact more closely with the opposite strand. Eventually, the G‐bulge and T–U mismatch and the three aforementioned local structures could be discriminated by using ODN F2. In addition, the dissociation processes of these duplexes could be monitored concurrently by ¹⁹F NMR spectroscopy.     

Lithium‐Rich Layered Oxide Li1.18Ni0.15Co0.15Mn0.52O2 as the Cathode Material for Hybrid Sodium‐Ion Batteries

Li‐rich layered oxide Li_1.18Ni_0.15Co_0.15Mn_0.52O₂ (LNCM) is, for the first time, examined as the positive electrode for hybrid sodium‐ion battery and its Na⁺ storage properties are comprehensively studied in terms of galvanostatic charge–discharge curves, cyclic voltammetry and rate capability. LNCM in the proposed sodium‐ion battery demonstrates good rate capability whose discharge capacity reaches about 90 mA h g^?1 at 10 C rate and excellent cycle stability with specific capacity of about 105 mA h g^?1 for 200 cycles at 5 C rate. Moreover, ex situ ICP‐OES suggests interesting mixed‐ions migration processes: In the initial two cycles, only Li⁺ can intercalate into the LNCM cathode, whereas both Li⁺ and Na⁺ work together as the electrochemical cycles increase. Also the structural evolution of LNCM is examined in terms of ex situ XRD pattern at the end of various charge–discharge scans. The strong insight obtained from this study could be beneficial to the design of new layered cathode materials for future rechargeable sodium‐ion batteries.     

Copper‐based Metal‐organic Framework for Non‐enzymatic Electrochemical Detection of Glucose

A non‐enzymatic electrochemical glucose sensor based on a Cu‐based metal‐organic framework (Cu‐MOF) modified electrode was developed. The Cu‐MOF was prepared by a simple ionothermal synthesis, and the characterizations of the Cu‐MOF were studied by Fourier transform infrared spectroscopy (FT‐IR), scanning electron microscopy (SEM), thermogravimetric analysis (TGA), single‐crystal X‐ray powder diffraction (SCXRD), and X‐ray powder diffraction (XRD). Electrochemical behaviors of the Cu‐MOF modified electrode to glucose were measured by differential pulse voltammetry (DPV). The electrochemical results showed that the Cu‐MOF modified electrode exhibited an excellent electro‐catalytic oxidation towards glucose in the range of 0.06 μM to 5 mM with a sensitivity of 89 μA/mM cm² and a detection limit of 10.5 nM. Moreover, the fabricated sensor showed a high selectivity to the oxidation of glucose in coexistence with other interferences. The sensor was satisfactorily applied to the determination of glucose in urine samples. With the significant electrochemical performances, MOFs may provide a suitable platform in the construction of kinds of electrochemical sensors and/or biosensors and hold a great promise for sensing applications.     

Amperometric Ethanol Biosensors Based on Chitosan‐NAD+‐Alcohol Dehydrogenase Films

The reagentless and oxygen‐independent biosensors for ethanol were developed based on the covalent immobilization of alcohol dehydrogenase (ADH) and its cofactor nicotinamide adenine dinucleotide (NAD⁺) on chitosan (CHIT) chains. The CHIT‐NAD⁺‐ADH structures were adsorbed onto carbon nanotubes (CNT) in order to provide a signal transduction based on the recycling of redox states of NAD cofactor at CNT (detection limit, 8–30 µM ethanol; dynamic range up to 20 mM). The CHIT‐NAD⁺‐dehydrogenase/CNT hybrid material represents a general approach to the development of dehydrogenases‐based electrochemical biosensors. Interestingly, the CHIT‐NAD⁺ solutions preserved their enzymatic activity even after five years of storage at 4 °C.     

One‐Electron Reduction of Acenaphthene‐1,2‐Diimine Nickel(II) Complexes

New nickel‐based complexes of 1,2‐bis[(2,6‐diisopropylphenyl)imino]acenaphthene (dpp‐bian) with BF₄^? counterion or halide co‐ligands were synthesized in THF and MeCN. The nickel(I) complexes were obtained by using two approaches: 1) electrochemical reduction of the corresponding nickel(II) precursors; and 2) a chemical comproportionation reaction. The structural features and redox properties of these complexes were investigated by using single‐crystal X‐ray diffraction (XRD), cyclic voltammetry (CV), and electron paramagnetic resonance (EPR) and UV/Vis spectroscopy. The influence of temperature and solvent on the structure of the nickel(I) complexes was studied in detail, and an uncommon reversible solvent‐induced monomer/dimer transformation was observed. In the case of the fluoride complex, the unpaired electron was found to be localized on the dpp‐bian ligand, whereas all of the other nickel complexes contained neutral dpp‐bian moieties.     

Porous‐Organic‐Framework‐Templated Nitrogen‐Rich Porous Carbon as a More Proficient Electrocatalyst than Pt/C for the Electrochemical Reduction of Oxygen

Porous nitrogen‐rich carbon (POF‐C‐1000) that was synthesized by using a porous organic framework (POF) as a self‐sacrificing host template in a nanocasting process possessed a high degree of graphitization in an ordered structural arrangement with large domains and well‐ordered arrays of carbon sheets. POF‐C‐1000 exhibits favorable electrocatalytic activity for the oxygen‐reduction reaction (ORR) with a clear positive shift of about 40 mV in the onset potential compared to that of a traditional, commercially available Pt/C catalyst. In addition, irrespective of its moderate surface area (785 m² g^?1), POF‐C‐1000 showed a reasonable H₂ adsorption of 1.6 wt % (77 K) and a CO₂ uptake of 3.5 mmol g^?1 (273 K).     

Quantum‐Chemical and Electrochemical Investigation of the Electrochemical Windows of Halogenated Carborate Anions

The range of electrochemical stability of a series of weakly coordinating halogenated (Hal=F, Cl, Br, I) 1‐carba‐closo‐dodecaborate anions, [1‐R‐CB₁₁X₅Y₆]^? (R=H, Me; X=H, Hal, Me; Y=Hal), has been established by using quantum chemical calculations and electrochemical methods. The structures of the neutral and dianionic radicals, as well as the anions, have been optimized by using DFT calculations at the PBE0/def2‐TZVPP level. The calculated structures are in good agreement with existing experimental data and with previous calculations. Their gas‐phase ionization energies and electron affinities were calculated based on their optimized structures and were compared with experimental (cyclic and square‐wave) voltammetry data. Electrochemical oxidation was performed in MeCN at room temperature and in liquid sulfur dioxide at lower temperatures. All of the anions show a very high resistance to the onset of oxidation (2.15–2.85 V versus Fc^0/+), with only a minor dependence of the oxidation potential on the different halogen substituents. In contrast, the reduction potentials in MeCN are strongly substituent dependent (?1.93 to ?3.32 V versus Fc^0/+). The calculated ionization energies and electron affinities correlate well with the experimental redox potentials, which provide important verification of the thermodynamic validity of the mostly irreversible redox processes that are observed for this series. The large electrochemical windows that are afforded by these anions indicate their suitability for electrochemical applications, for example, as supporting electrolytes.     

Electrochemical Behaviours and Detection of Adenosine‐5¢‐triphosphate on an Ionic Liquid Modified Carbon Paste Electrode

In this paper a new electrochemical method based on the ionic liquid modified carbon paste electrode (IL‐CPE) was proposed for the determination of adenosine‐5′‐triphosphate (ATP) in a pH 4.5 Britton‐Robinson (B‐R) buffer solution. IL‐CPE was prepared by using 1‐butyl‐3‐methylimidazolium trifluoroacetate (BMIMCF₃COO) as the modifier. Cyclic voltammetry was used to investigate the electrochemical behaviors of ATP on the IL‐CPE, and the results indicated that IL‐CPE exhibited strong electrocatalytic ability to promote the oxidation of ATP with a single well‐defined irreversible adsorption‐controlled oxidation peak appeared. The electrochemical reaction parameters of ATP were calculated with the results of the electron transfer coefficient (α) as 0.40, the electron transfer number (n) as 1.17, the apparent heterogeneous electron transfer rate constant (ks) as 3.66 × 10^‐6 s^‐1 and the surface coverage (Γ_τ) as 2.48 × 10^‐9 mol cm^‐2. Under the selected conditions the proposed IL‐CPE showed good performances to the ATP detection in the concentration range from 0.1 to 1000.0 μmol L^‐1 with the detection limit as 3.65 × 10^‐8 mol L^‐1 (3σ) by differential pulse voltammetry. The method showed good selectivity to the ATP detection without the interferences of coexisting substances and was successfully applied to the ATP injection samples detection with satisfactory results.