Interplay between Metal⋅⋅⋅π Interactions and Hydrogen Bonds: Some Unusual Synergetic Effects of Coinage Metals and Substituents

The ternary systems of C₂H₄ (C₂H₂ or C₆H₆)‐MCN‐HF (M=Cu, Ag, Au) and the respective binary systems were investigated to study the interplay between metal???π interactions and hydrogen bonds. The metal???π interactions in C₂H₄‐MCN become stronger with the irregular order Ag<Cu<Au, while the hydrogen bonds in MCN‐HF become weaker following the same order. The metal???π interactions are weakened as the H atoms in the π system are replaced with electron‐withdrawing groups and enhanced by electron‐donating groups. Type 1 of these ternary systems, in which MCN acts as Lewis base and acid simultaneously, is more stable than type 2, in which C₂H₄ acts as a double Lewis base. Negative cooperativity is present in type 2 ternary systems with a weakening of the metal???π interactions and the hydrogen bonds. Positive cooperativity is found in type 1 ternary systems with an enhancement of the metal???π interactions and the hydrogen bonds, except for C₂(CN)₄‐AuCN‐HF‐1. The weaker metal???π interaction in C₆H₆‐AuCN has a greater enhancing effect on the hydrogen bond in AuCN‐HF than those in C₂H₄‐AuCN and C₂H₂‐AuCN. These synergetic effects were analyzed with the natural bond orbital and energy decomposition.     

Construction of Hetero‐Four‐Layered Tripalladium(II) Cyclophanes by Transannular π⋅⋅⋅π Interactions

A synthetic strategy for the generation of new molecular species utilizing a provision of nature is presented. Nano‐dimensional (23(2)×21(1)×16(1) ų) hetero‐four‐layered trimetallacyclophanes were constructed by proof‐of‐concept experiments that utilize a suitable combination of π???π interactions between the central aromatic rings, tailor‐made short/long spacer tridentate donors, and the combined helicity. The behavior of the unprecedented four‐layered metallacyclophane system offers a landmark in the development of new molecular systems.     

A Crystallographic Charge Density Study of the Partial Covalent Nature of Strong N⋅⋅⋅Br Halogen Bonds

The covalent nature of strong N?Br???N halogen bonds in a cocrystal ( 2 ) of N‐bromosuccinimide ( NBS ) with 3,5‐dimethylpyridine ( lut ) was determined from X‐ray charge density studies and compared to a weak N?Br???O halogen bond in pure crystalline NBS ( 1 ) and a covalent bond in bis(3‐methylpyridine)bromonium cation (in its perchlorate salt ( 3 ). In 2 , the donor N?Br bond is elongated by 0.0954 Å, while the Br???acceptor distance of 2.3194(4) is 1.08 Å shorter than the sum of the van der Waals radii. A maximum electron density of 0.38 e Å^?3 along the Br???N halogen bond indicates a considerable covalent contribution to the total interaction. This value is intermediate to 0.067 e Å^?3 for the Br???O contact in 1 , and approximately 0.7 e Å^?3 in both N?Br bonds of the bromonium cation in 3 . A calculation of the natural bond order charges of the contact atoms, and the σ*(N1?Br) population of NBS as a function of distance between NBS and lut , have shown that charge transfer becomes significant at a Br???N distance below about 3 Å.     

A–X⋯σ Interactions—Halogen Bonds with σ-Electrons as the Lewis Base Centre

CCSD(T)/aug-cc-pVTZ//ωB97XD/aug-cc-pVTZ calculations were performed for halogen-bonded complexes. Here, the molecular hydrogen, cyclopropane, cyclobutane and cyclopentane act as Lewis base units that interact through the electrons of the H–H or C–C σ-bond. The FCCH, ClCCH, BrCCH and ICCH species, as well as the F₂, Cl₂, Br₂ and I₂ molecular halogens, act as Lewis acid units in these complexes, interacting through the σ-hole localised at the halogen centre. The Quantum Theory of Atoms in Molecules (QTAIM), the Natural Bond Orbital (NBO) and the Energy Decomposition Analysis (EDA) approaches were applied to analyse these aforementioned complexes. These complexes may be classified as linked by A–X···σ halogen bonds, where A = C, X (halogen). However, distinct properties of these halogen bonds are observed that depend partly on the kind of electron donor: dihydrogen, cyclopropane, or another cycloalkane. Examples of similar interactions that occur in crystals are presented; Cambridge Structural Database (CSD) searches were carried out to find species linked by the A–X···σ halogen bonds.     

Short but Weak: The Z‐DNA Lone‐Pair⋅⋅⋅π Conundrum Challenges Standard Carbon Van der Waals Radii

Current interest in lone‐pair???π (lp???π) interactions is gaining momentum in biochemistry and (supramolecular) chemistry. However, the physicochemical origin of the exceptionally short (ca. 2.8 Å) oxygen‐to‐nucleobase plane distances observed in prototypical Z‐DNA CpG steps remains unclear. High‐level quantum mechanical calculations, including SAPT2+3 interaction energy decompositions, demonstrate that lp???π contacts do not result from n→π* orbital overlaps but from weak dispersion and electrostatic interactions combined with stereochemical effects imposed by the locally strained structural context. They also suggest that the carbon van der Waals (vdW) radii, originally derived for sp³ carbons, should not be used for smaller sp² carbons attached to electron‐withdrawing groups. Using a more adapted carbon vdW radius results in these lp???π contacts being no longer of the sub‐vdW type. These findings challenge the whole lp???π concept that refers to elusive orbital interactions that fail to explain short interatomic contact distances.     

Observation of CH⋅⋅⋅π Interactions between Methyl and Carbonyl Groups in Proteins

Protein structure and function is dependent on myriad noncovalent interactions. Direct detection and characterization of these weak interactions in large biomolecules, such as proteins, is experimentally challenging. Herein, we report the first observation and measurement of long‐range “through‐space” scalar couplings between methyl and backbone carbonyl groups in proteins. These J couplings are indicative of the presence of noncovalent C−H⋅⋅⋅π hydrogen‐bond‐like interactions involving the amide π network. Experimentally detected scalar couplings were corroborated by a natural bond orbital analysis, which revealed the orbital nature of the interaction and the origins of the through‐space J couplings. The experimental observation of this type of CH⋅⋅⋅π interaction adds a new dimension to the study of protein structure, function, and dynamics by NMR spectroscopy.     

Anion⋅⋅⋅Si Interactions in an Inverse Sandwich Complex: A Computational Study

Combination of an electron‐rich molecule (e.g. chloride anion or nitrile group) with a chlorinated cyclohexasilane ring produces a supramolecular inverse sandwich complex formed by two guests (Cl^? or R?C≡N) strongly bonded to both faces of a planar host (Si₆ ring). In‐depth theoretical studies were carried out to investigate the nature of the bonding interactions that generate such a stable complex. Second‐order Møller–Plesset perturbation theory (MP2) calculations confirmed that the presence of the Cl substituents is fundamental to the stability of the supramolecular assemblies. The density functional theory (DFT) functional wB97XD gave an estimation of the contribution of dispersion interactions to the binding energy. These interactions become more important as the Cl atoms of the rings are systematically replaced by methyl groups or hydrogen atoms. Analysis of the topology of the electron density and the reduced density gradient gave insight into the binding of the studied supramolecular assemblies.     

Noncovalent Lone Pair⋅⋅⋅(No‐π!)‐Heteroarene Interactions: The Janus‐Faced Hydroxy Group

A comparative study using NMR spectroscopy and designed top‐pan molecular balances demonstrates that the noncovalent interaction of a hydroxy group with π‐deficient pyrazine and quinoxaline units involves a lone pair–heteroarene interaction which is much stronger and solvent independent when measured relative to the classical π‐facial hydrogen bond to a benzene ring. Alkyl fluorides also prefer the heteroarene rings over the benzene ring. The attractive interaction between a quinoxaline and a terminal alkyne is also stronger than the intramolecular hydrogen bond to an arene.     

Confirmed by X‐ray Crystallography: The B⋅B One‐Electron σ Bond

Is one electron sufficient to bring about significant σ bonding between two atoms? The chemist’s view on the chemical bond is usually tied to the concept of shared electron pairs, and not too much experimental evidence exists to challenge this firm belief. Whilst species with the unusual one‐electron σ‐bonding motif between homonuclear atoms have so far been identified mainly by spectroscopic evidence, we present herein the first crystallographic characterization, augmented by a detailed quantum‐chemical validation, for a radical anion featuring a B?B one‐electron‐two‐center σ bond.     

Boron as an Electron‐Pair Donor for B⋅⋅⋅Cl Halogen Bonds

MP2/aug′‐cc‐pVTZ calculations were performed to investigate boron as an electron‐pair donor in halogen‐bonded complexes (CO)₂(HB):ClX and (N₂)₂(HB):ClX, for X=F, Cl, OH, NC, CN, CCH, CH₃, and H. Equilibrium halogen‐bonded complexes with boron as the electron‐pair donor are found on all of the potential surfaces, except for (CO)₂(HB):ClCH₃ and (N₂)₂(HB):ClF. The majority of these complexes are stabilized by traditional halogen bonds, except for (CO)₂(HB):ClF, (CO)₂(HB):ClCl, (N₂)₂(HB):ClCl, and (N₂)₂(HB):ClOH, which are stabilized by chlorine‐shared halogen bonds. These complexes have increased binding energies and shorter B?Cl distances. Charge transfer stabilizes all complexes and occurs from the B lone pair to the σ* Cl?A orbital of ClX, in which A is the atom of X directly bonded to Cl. A second reduced charge‐transfer interaction occurs in (CO)₂(HB):ClX complexes from the Cl lone pair to the π* C≡O orbitals. Equation‐of‐motion coupled cluster singles and doubles (EOM‐CCSD) spin–spin coupling constants, ^1xJ(B‐Cl), across the halogen bonds are also indicative of the changing nature of this bond. ^1xJ(B‐Cl) values for both series of complexes are positive at long distances, increase as the distance decreases, and then decrease as the halogen bonds change from traditional to chlorine‐shared bonds, and begin to approach the values for the covalent bonds in the corresponding ions [(CO)₂(HB)?Cl]⁺ and [(N₂)₂(HB)?Cl]⁺. Changes in ¹¹B chemical shieldings upon complexation correlate with changes in the charges on B.     

σ–π Continuum in Indole–Palladium(II) Complexes

The intrinsic features of (hetero‐arene)–metal interactions have been elusive mainly because the systematic structure analysis of non‐anchored hetero‐arene–metal complexes has been hampered by their labile nature. We report successful isolation and systematic structure analysis of a series of non‐anchored indole–palladium(II) complexes. It was revealed that there is a σ–π continuum for the indole–metal interaction, while it has been thought that the dominant coordination mode of indole to a metal center is the Wheland‐intermediate‐type σ‐mode in light of the seemingly strong electron‐donating ability of indole. Several factors which affect the σ‐ or π‐character of indole–metal interactions are discussed.     

Energetic N‐Nitramino/N‐Oxyl‐Functionalized Pyrazoles with Versatile π–π Stacking: Structure–Property Relationships of High‐Performance Energetic Materials

N‐Nitramino/N‐oxyl functionalization strategies were employed to investigate structure–property relationships of energetic materials. Based on single‐crystal diffraction data, π–π stacking of pyrazole backbones can be tailored effectively by energetic functionalities, thereby resulting in diversified energetic compounds. Among them, hydroxylammonium 4‐amino‐3,5‐dinitro‐1H‐pyrazol‐1‐olate and dipotassium N,N′‐(3,5‐dinitro‐1H‐pyrazol‐1,4‐diyl)dinitramidate, with unique face‐to‐face π–π stacking, can be potentially used as a high‐performance explosive and an energetic oxidizer, respectively.     

K⋅⋅⋅F/O Interactions Bridge Copper(I) Fluorinated Alkoxide Complexes and Facilitate Dioxygen Activation

Seven E[Cu(OR)₂] copper(I) complexes (E=K⁺, {K(18C6)}⁺ (18C6=[18]crown‐6), or Ph₄P⁺; R=C₄F₉, CPhMe^F₂, and CMeMe^F₂) have been prepared and their reactivity with O₂ studied. The K[Cu(OR)₂] species react with O₂ in a copper‐concentration‐dependent manner such that 2:1 and 3:1 Cu/O₂ adducts are observed manometrically at ?78 °C. Analogous reactivity with O₂ is not observed with the {K(18C6)}⁺ or Ph₄P⁺ derivatives. Solution conductivity data demonstrate that these K[Cu(OR)₂] complexes do not behave as 1:1 electrolytes in solution. The K⁺ ions induce aggregation of multiple [Cu(OR)₂]^? units through K???F/O interactions and thereby effect irreversible O₂ reduction by multiple Cu centers. Bond valence analyses for the potassium cations confirm the dominance of the fluorine interactions in the coordination spheres of K⁺ ions. Intramolecular hydroxylation of ligand aryl and alkyl C? H bonds is observed. Nucleophilic reactivity with CO₂ is observed for the oxygenated Cu complexes and a Cu^II carbonate has been isolated and characterized.