Synthesis,crystal structures,spectral FT‐IR,NMR and UV–Vis investigations and Hirshfeld surface analysis of two new 2‐hydroxyethyl‐substituted N‐heterocyclic carbene precursors

This study discusses the synthesis of two new 2‐hydroxyethyl substituted N‐heterocyclic carbene (NHC) precursors. The NHC precursors were prepared from 1‐(alkyl/aryl)benzimidazole and alkyl halides. They were characterized using ¹H NMR, ¹³C NMR, FT‐IR, UV–Vis spectroscopy, and elemental analysis techniques. Molecular and crystal structures of 1 and 2 were determined using the single‐crystal X‐ray diffraction method. Crystal structure of the compounds features NHC precursors and chloride anions. Additionally in 2 , the asymmetric unit has a water molecule, which forms a tetrameric chloride‐hydrate assembly with the chloride anion. The chloride anions play an important role in the stabilization of crystal structures to form a two‐dimensional supramolecular architecture. The 3D Hirshfeld surface and the associated 2D fingerprint plots were also drawn to gain insights into the behavior of the interactions in the compounds.     

Solvent‐Dependent Self‐Discrimination of Bis(2‐hydroxyphenyl)diamides

Solvent‐dependent, self‐discrimination of diamides is described. Mixing a solution of (R)‐ 1 a and (S)‐ 1 a , which are valine‐derived, bis(2‐hydroxyphenyl)diamide‐bearing, multiple hydrogen‐bonding modules, in dichloromethane immediately led to the formation of a thick suspension comprising a 1:1 heterochiral aggregate of 1 a . The solubility of heterochiral 1 a was substantially lower in halogenated solvents than in ethyl acetate. A perusal of racemic crystal structures obtained from chloroform and ethyl acetate revealed a significant difference in the crystal‐packing pattern, which is likely to be the basis for the pronounced difference in solubility. Specific self‐discrimination of 1 a in an ensemble of eight structurally related molecules showcased the specific aggregation through the hydrogen‐bonding network of the bis(2‐hydroxyphenyl)diamide framework. The low solubility of heterochiral 1 a in halogenated solvent was exploited to achieve high stereoselectivity in a catalytic asymmetric reaction by using a low enantiomeric excess sample of 1 a .     

Single‐Crystal X‐ray Diffraction Structure of the Stable Enol Tautomer Polymorph of Barbituric Acid at 224 and 95 K

The thermodynamically stable enol crystal form of barbituric acid, previously prepared as powder by grinding or slurry methods, has been obtained as single crystals by slow cooling from methanol solution. The selection of the enol crystal was facilitated by a density‐gradient method. The structure at 224 and 95 K confirms the enol inferred on the basis of powder data. The enol has bond lengths that are consistent with the expected bond order and with DFT calculations that include treatment of hydrogen bonding. In isolation, the enol is higher in energy than the tri‐keto form by 50 kJ mol^?1 which must be more than compensated by enhanced hydrogen bonding. Both crystal forms have four normal H‐bonds; the enol has two additional H‐bonds with O–O distances of 2.49 Å. Conversion into the enol form occurs spontaneously in the solid state upon prolonged storage of the commercial tri‐keto material. Slurry conversion of tri‐one to enol in ethanol is reversed in direction in ethanol‐D₁.     

Water‐soluble meta‐poly(phenylene ethynylene) oligomers with stable helical secondary structure

Two novel water‐soluble meta‐poly(phenylene ethynylene) (mPPE) copolymers were synthesized and characterized, each contained ester and amine functional groups attached to exohelix positions on the phenylene rings and one contained methoxy endohelix functional groups. Secondary structure formation was investigated for these materials in aqueous solutions using ultraviolet and fluorescence spectroscopy. Additionally, the folding behaviors are reported for the mPPEs and their protected amine precursors in other protic and aprotic solvents. Results indicate that both mPPEs are able to form stable helical structures in water, while only the nonmethoxylated polymer exhibited a helical structure in acetonitrile and several alcohols. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Chiral recognition and conglomerate crystallization induced by self-organization of cobalt(III) complexes of a tripodal ligand containing three imidazole groups

The effect of a counteranion on chiral recognition inducing conglomerate crystallization of a cobalt(III) complex is reported. An achiral tripodal ligand involving three imidazole groups, tris{[2-{(imidazol-4-yl)methylidene}amino]ethyl}amine (H3L), was prepared by condensation of tris(2-aminoethyl)amine and 4-formylimidazole in a 1:3 mole ratio. The reaction of H3L and trans-[CoIIICl2(py)4]+ afforded the chiral (Delta or Lambda) [CoIII(H3L)]3+ complex. The formally hemideprotonated complexes [CoIII(H(1.5)L)]X(1.5).nH2O (where X = Cl, Br, I, BF4, ClO4, or PF6) were synthesized by controlled deprotonation of the uncoordinated imidazole NH groups of [Co(H3L)]3+. In crystals of the hemideprotonated complex, two components, [Co(H3L)]3+ and [Co(L)], with the same absolute configuration are linked by imidazole-imidazolate hydrogen bonds to form an extended homochiral 2D sheet structure, which is composed of a hexanuclear unit with a trigonal void. There are two ways of stacking the sheets: One is via homochiral stacking, and the other is via heterochiral stacking. When the size of the counterion is small (i.e., X = Cl, Br, I, or BF4), adjacent homochiral sheets with the same chirality are stacked to form a homochiral crystal (conglomerate). With large anions (i.e., ClO4- and PF6-), a homochiral sheet consisting of Delta enantiomers and a sheet consisting of Lambda enantiomers are stacked alternately to give a heterochiral crystal (a racemic crystal). Optically active Lambda-[Co(H(1.5)L)](ClO4)(1.5).H2O was synthesized from Lambda-[Co(H3L)]3+, and the crystal structure was compared to that of the racemic complex. There are two conflicting factors governing the crystal structure: the skeletal density; the size of the channels. The 2D sheets are more closely packed in the homochiral crystal than in the heterochiral crystal. However, the channels, where the counterions are accommodated, are smaller in the homochiral crystal, and the steric congestion between the anions increases with increasing anion size. The heterochiral crystal has a flexible, zigzag channel structure, and the size of the channels can increase to accommodate larger anions. Thus, complexes with large anions (i.e., ClO4- and PF6-) preferentially form heterochiral crystals rather than homochiral crystals.     

Electrocatalytic Synthesis of Non‐Symmetric Biphenols Mediated by Tri(p‐bromophenyl)amine: Selective Oxidative Cross‐Coupling of Different Phenols and Naphthols

An efficient electrochemical access to the non‐symmetric biphenols using tri(p‐bromophenyl)amine (TBPA) as a redox mediator has been developed. The electrochemical protocol features highly selective cross‐coupling products in up to 83% yield, instead of forming homo‐coupling ones.     

Synthesis of 3‐aminomethylidenechroman‐2‐carboxamides by a Sequential One‐pot Three Component Reaction and by Post‐Passerini Condensation Modification

3‐Arylaminomethylidenechroman‐2‐carboxamide has been synthesized by a one‐pot three component reaction among 3‐formylchromone, aromatic amine, and cyclohexyl isocyanide. 3‐(N‐alkylsubstitued/unsubstituted)aminomethylidenechroman‐2‐carboxamides were synthesized by heating Passerini products derived from chromone‐3‐carbaldehyde with different aliphatic primary amines. The products obtained from the reactions of aliphatic primary amines readily form chromeno[2,3‐c]pyrrole when heated in acetic acid. Bischromanones have also been synthesized using this methodology.     

Synthesis and Base Pairing Properties of 1′,5′‐Anhydro‐L‐Hexitol Nucleic Acids (L‐HNA)

Oligonucleotides composed of 1′,5′‐anhydro‐arabino‐hexitol nucleosides belonging to the L series (L ‐HNA) were prepared and preliminarily studied as a novel potential base‐pairing system. Synthesis of enantiopure L ‐hexitol nucleotide monomers equipped with a 2′‐(N⁶‐benzoyladenin‐9‐yl) or a 2′‐(thymin‐1‐yl) moiety was carried out by a de novo approach based on a domino reaction as key step. The L oligonucleotide analogues were evaluated in duplex formation with natural complements as well as with unnatural sugar‐modified oligonucleotides. In many cases stable homo‐ and heterochiral associations were found. Besides T_m measurements, detection of heterochiral complexes was unambiguously confirmed by LC‐MS studies. Interestingly, circular dichroism measurements of the most stable duplexes suggested that L ‐HNA form left‐handed helices with both D and L oligonucleotides.     

Heterocyclic Bismuth(III) Dithiocarbamato Complexes as Single‐Source Precursors for the Synthesis of Anisotropic Bi2S3 Nanoparticles

New complexes catena‐(μ₂‐nitrato‐O,O′)bis(piperidinedithiocarbamato)bismuth(III) ( 1 ) and tetrakis(μ‐nitrato)tetrakis[bis(tetrahydroquinolinedithiocarbamato)bismuth(III)] ( 2 ) were synthesised and characterised by elemental analysis, FTIR spectroscopy and thermogravimetric analysis. The single‐crystal X‐ray structures of 1 and 2 were determined. The coordination numbers of the Bi^III ion are 8 for 1 and ≥6 for 2 when the experimental electron density for the nominal 6s² lone pair of electrons is included. Both complexes were used as single‐source precursors for the synthesis of dodecylamine‐, hexadecylamine‐, oleylamine and tri‐n‐octylphosphine oxide‐capped Bi₂S₃ nanoparticles at different temperatures. UV/Vis spectra showed a blueshift in the absorbance band edge characteristic of a quantum size effect. High‐quality, crystalline, long and short Bi₂S₃ nanorods were obtained depending on the thermolysis temperature, which was varied from 190 to 270 °C. A general trend of increasing particle breadth with increasing reaction temperature and increasing length of the carbon chain of the amine (capping agent) was observed. Powder XRD patterns revealed the orthorhombic crystal structure of Bi₂S₃.     

Dynamic Aminal‐Based TPA Ligands

The use of dynamic covalent reactions (DCRs) is gaining popularity for the construction of self‐assembling architectures. We have recently introduced DCRs that exchange alcohols and aldehydes to create hemiaminal ethers within tri(2‐picolyl)amine (TPA) ligands, all of which are templated by Zn^II. To expand the scope of this assembly, aromatic imines derived from pyridine‐2‐carboxyaldehyde were explored as dynamic covalent receptors for di(2‐picolyl)amine in the presence of Zn^II to create TPA ligands that contain aminal linkages. This represents another metal‐templated in situ multicomponent assembly. The stability of the assembly was successfully modulated through substituent effects, and the equilibrium constants from imines to aminals were correlated by a linear free energy relationship (LFER) with σ⁺ values. Dynamic component exchange was investigated as a means of probing multiple equilibriums quantitatively in the system. Further, the mechanism was analyzed with a qualitative kinetics study. NMR spectra reveal the different extents of two competing pathways for assembly depending upon whether the aromatic amine has electron‐withdrawing or electron‐donating groups on the ring. Finally, mass spectral evidence supports the presence and differing extents of dominance of the two pathways as a function of the substituents.     

1‐[(5‐tert‐Butyl‐2‐hydroxy­phen­yl)­imino­meth­yl]‐2‐napthol

In the crystal structure of the title compound, C₂₁H₂₁NO₂, strong N—H⋯O and O—H⋯O hydrogen bonds exist. The keto–amine form is favoured over the enol–imine form in the tautomerism. Six‐membered chelate rings formed by intra­molecular hydrogen bonds increase the stability of the whole mol­ecule. Inter­molecular hydrogen bonds link adjacent units together, forming an infinite one‐dimensional chain parallel to the a axis.     

Mixed Oligoureas Based on Constrained Bicyclic and Acyclic β‐Amino Acids Derivatives: On the Significance of the Subunit Configuration for Folding

The combination of a non‐functionalized constrained bicyclo[2.2.2]octane motif along with urea linkages allowed the formation of a highly rigid 2.5_12/14 helical system both in solution and the solid state. In this work, we aimed at developing stable and functionalized systems as promising materials for biological applications in investigating the impact of this constrained motif and its configuration on homo and heterochiral mixed‐oligourea helix formation. Di‐, tetra‐, hexa‐, and octa‐oligoureas alternating the highly constrained bicyclic motif of (R) or (S) configuration with acyclic (S)‐β³‐amino acid derivatives were constructed. Circular dichroism (CD), NMR experiments, and the X‐ray crystal structure of the octamer unequivocally proved that the alternating heterochiral R/S sequences form a stable left‐handed 2.5‐helix in contrast to the mixed (S/S)‐oligoureas, which did not adopt any defined secondary structure. We observed that the (?)‐synclinal conformation around the C_α? C_β bond of the acyclic residues, although sterically less favorable than the (+)‐synclinal conformation, was imposed by the (R)‐bicyclic amino carbamoyl (BAC) residue. This highlighted the strong ability of the BAC residue to drive helical folding in heterochiral compounds. The role of the stereochemistry of the BAC unit was assessed and a model was proposed to explain the misfolding of the S/S sequences.     

Double‐Armed Benzo‐15‐crown‐5 Ligands and Complexes and Single Crystal Structure Determination

This work describes the syntheses and characterizations of double‐armed benzo‐15‐crown‐5 containing nitro ( 1 ), amine ( 2 ), and imine ( 3–5 ) groups, and their sodium complexes ( 1a–5a ). Structures of the ligands ( 1–5 ) and sodium complexes ( 1a–5a ) were identified via elemental analyses, and infrared, ¹H‐ nuclear magnetic resonance (NMR), ¹³C‐NMR, and mass spectrometry. The metal extractions were examined by using ultravoilet–visible spectrophotometry. Single crystal for 2 was successfully obtained, and its X‐ray crystal structure was resolved. The compound 2 crystallizes in triclinic, space group p‐1 with a = 9.1420(3), b = 14.9580(4), c = 20.4110(5), and Z = 4.     

Synthese und Charakterisierung von InIII–SnII‐Halogenido‐Alkoxiden und von Indiumtri‐tert‐butoxid

Synthesis and Characterization of In^III–Sn^II‐Halogenido‐Alkoxides and of Indiumtri‐ tert ‐butoxide Through sodium halide elimination between Indium(III) halides and sodium‐tri‐tert‐butoxistannate(II) or sodium‐tri‐tert‐butoxigermanate(II) the three new heterometallic and heteroleptic alkoxo compounds THF · Cl₂In(OtBu)₃Sn ( 1 ), THF · Br₂In(OtBu)₃Sn ( 2 ), and THF · Cl₂In‐ (OtBu)₃Ge ( 3 ), have been synthesized. The molecular structures of 1 and 2 in the solid state follow from single crystal X‐ray structure determinations while structural changes in solution may be derived from temperature dependant NMR spectroscopy. The crystal structures of compounds 1 and 2 are despite different halide atoms isostructural. Both crystallize in the ortho‐rhombic crystal system in space group Pbca with eight molecules per unit cell. The heavy atoms occupy the apical positions of empty trigonal bipyramids of almost point symmetry C_s(m) and are connected through oxygen atoms occupying the equatorial positions. The indium atoms in both compounds are in the centers of distorted octahedra from 4 oxygen and 2 halogen atoms whereas the tin atoms are coordinated by three oxygen atoms in a trigonal pyramidal fashion. Although the coordinative bonding of THF to indium leads to an asymmetry of the molecule the NMR spectra in solution are simple showing a more complex pattern at lower temperatures. Tri(tert‐butoxi)indium [In(OtBu)₃]₂ ( 4 ), is obtained through alcoholysis of In(N(Si(CH₃)₃)₂)₃ using tert‐butanol in toluene and is crystallized from hexane. The X‐ray structure determination of 4 seems to be the first one of a homoleptic and homometallic indiumalkoxide. Compound 4 crystallizes in the monoclinic crystal system in a dimeric form with eight molecules in the unit cell of space group C2/c. The dimeric units have C₂ symmetry and an almost planar In₂O₂ ring which originates from oxygen bridging of the monomers. Through this mutual Lewis acid base interaction the indium atoms get four oxygen ligands in a distorted tetrahedral environment.     

Synthesis of novel N‐alkyl/aryl‐N′‐(4‐arylthiazol‐2‐yl)‐N″‐xylosyl guanidines

The reaction of 2,3,4‐tri‐O‐acetyl‐β‐D‐xylopyranosyl isothiocyanate ( 1 ) and 2‐amino‐4‐arylthiazoles ( 2 ) gave xylosylthioureas 3 . These thiourea derivatives reacted with alkyl/aryl amine in the presence of HgCl₂ to give a new series of N‐alkyl/aryl‐N″‐(4‐arylthiazol‐2‐yl)‐N″‐xylosyl guanidines 4 . Some of the synthesized guanidines were screened for their biological activity. © 2007 Wiley Periodicals, Inc. Heteroatom Chem 18:688–694, 2007; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20379     

Copper(I)‐Catalyzed Three‐Component Reaction of Terminal Propargyl Alcohols,Aldehydes, and Amines: Synthesis of 3‐Amino‐2‐pyrones and 2,5‐Dihydrofurans

A novel copper(I)‐catalyzed three‐component reaction for the efficient synthesis of 3‐amino‐2‐pyrones and 2,5‐dihydrofurans from propargyl alcohols, aldehydes, and amines has been developed. The starting materials are easily available and the scope of this method is broad. Through mechanistic studies, it is believed that the three‐component reaction consists of an A³‐coupling to propargylic amine, alkyne–allene isomerization, and intramolecular cyclization of the allenol to form a furan. In case of using ethyl glyoxalate as the aldehyde, a ring‐opening, lactonization, and isomerization process affords the 3‐amino‐2‐pyrones.     

Space‐ and Time‐Resolved In‐situ Spectroscopy on the Coke Formation in Molecular Sieves: Methanol‐to‐Olefin Conversion over H‐ZSM‐5 and H‐SAPO‐34

Formation of coke in large H‐ZSM‐5 and H‐SAPO‐34 crystals during the methanol‐to‐olefin (MTO) reaction has been studied in a space‐ and time‐resolved manner. This has been made possible by applying a high‐temperature in‐situ cell in combination with micro‐spectroscopic techniques. The buildup of optically active carbonaceous species allows detection with UV/Vis microscopy, while a confocal fluorescence microscope in an upright configuration visualises the formation of coke molecules and their precursors inside the catalyst grains. In H‐ZSM‐5, coke is initially formed at the triangular crystal edges, in which straight channel openings reach directly the external crystal surface. At reaction temperatures ranging from 530 to 745 K, two absorption bands at around 415 and 550 nm were detected due to coke or its precursors. Confocal fluorescence microscopy reveals fluorescent carbonaceous species that initially form in the near‐surface area and gradually diffuse inwards the crystal in which internal intergrowth boundaries hinder a facile penetration for the more bulky aromatic compounds. In the case of H‐SAPO‐34 crystals, an absorption band at around 400 nm arises during the reaction. This band grows in intensity with time and then decreases if the reaction is carried out between 530 and 575 K, whereas at higher temperatures its intensity remains steady with time on stream. Formation of the fluorescent species during the course of the reaction is limited to the near‐surface region of the H‐SAPO‐34 crystals, thereby creating diffusion limitations for the coke front moving towards the middle of the crystal during the MTO reaction. The two applied micro‐spectroscopic techniques introduced allow us to distinguish between graphite‐like coke deposited on the external crystal surface and aromatic species formed inside the zeolite channels. The use of the methods can be extended to a wide variety of catalytic reactions and materials in which carbonaceous deposits are formed.     

Copper(I)‐Catalyzed Three‐Component Reaction of Terminal Propargyl Alcohols,Aldehydes, and Amines: Synthesis of 3‐Amino‐2‐pyrones and 2,5‐Dihydrofurans

A novel copper(I)‐catalyzed three‐component reaction for the efficient synthesis of 3‐amino‐2‐pyrones and 2,5‐dihydrofurans from propargyl alcohols, aldehydes, and amines has been developed. The starting materials are easily available and the scope of this method is broad. Through mechanistic studies, it is believed that the three‐component reaction consists of an A³‐coupling to propargylic amine, alkyne–allene isomerization, and intramolecular cyclization of the allenol to form a furan. In case of using ethyl glyoxalate as the aldehyde, a ring‐opening, lactonization, and isomerization process affords the 3‐amino‐2‐pyrones.     

On the Role of Chirality in Guiding the Self‐Assembly of Peptides

Homochirality in peptides is crucial in sustaining “like–like” intermolecular interactions that allow the formation of assemblies and aggregates and is ultimately responsible for the resulting material properties. With the help of a series of stereoisomers of the tripeptide F–F–L, we demonstrate the critical role that peptide stereochemistry plays in the self‐assembly of peptides, guided by molecular recognition, and for self‐sorting. Homochiral self‐assemblies are thermally and mechanically more robust compared to heterochiral self‐assemblies. Morphological studies of the multicomponent peptide systems showed that aggregates formed from homochiral peptides possessed a uniform nano‐fibrous structure, whereas heterochiral systems resulted in self‐sorted systems with a heterogeneous morphology. In essence, homochiral peptides form the stronger aggregates, which may be one of reasons why homochirality is preferred in living systems.     

A clothes‐peg‐shaped binuclear trans‐bis(2‐aminotroponato)palladium(II) complex bearing pentamethylene spacers

rac‐Bis{μ‐trans‐2,2′‐[pentane‐1,5‐diylbis(azanediyl)]ditroponato}dipalladium(II), [Pd₂(C₁₉H₂₀N₂O₂)₂], has been synthesized and fully characterized using single‐crystal X‐ray diffraction, ¹H NMR, FT–IR and mass spectroscopy. The trans coordination, vaulted structure and anti conformation have been unequivocally established from the X‐ray diffraction studies. This is the first example of a bis(aminotroponato)palladium complex. In the crystalline state, the molecule has twofold symmetry and each molecular unit undergoes intermolecular offset π‐stacking of the tropone rings to afford heterochiral interpenetrating dimers that are aligned in a lamellar manner with a herringbone packing motif.