Complex formation between azacrown derivatives of dibenzylidenecyclopentanone and alkali-earth metal ions

The complex formation of 2,5-bis[4-(1,7,10,13-tetraoxa-4-azacyclopentadec-4-yl)benzylidene]cyclopentanone and several model compounds, prospective metal-sensitive fluorescent probes, with Mg²⁺, Ca²⁺, and Ba²⁺ ions in acetonitrile was studied. The azacrown derivatives of dibenzylidenecyclopentanone have two complex formation centers, azacrown cycle and carbonyl group. The sequence of binding to these sites is different for different ions. The efficient ejection of the Ca²⁺ and Ba²⁺ ions from their complexes with azacoronands was observed in the excited state, whereas in the case of the Mg²⁺ ion, this process occurred only partially.     

Molecular dynamics simulation exploration of cooperative migration mechanism of calcium ions in sarcoplasmic reticulum Ca2+‐ATPase

Calcium ATPase is a member of the P‐type ATPase, and it pumps calcium ions from the cytoplasm into the reticulum against a concentration gradient. Several X‐ray structures of different conformations have been solved in recent years, providing basis for elucidating the active transport mechanism of Ca²⁺ ions. In this work, molecular dynamics (MD) simulations were performed at atomic level to investigate the dynamical process of calcium ions moving from the outer mouth of the protein to their binding sites. Five initial locations of Ca²⁺ ions were considered, and the simulations lasted for 2 or 6 ns, respectively. Specific pathways leading to the binding sites and large structural rearrangements around binding sites caused by uptake of calcium ions were identified. A cooperative binding mechanism was observed from our simulation. Firstly, the first Ca²⁺ ion binds to site I , and then, the second Ca²⁺ ion approaches. The interactions between the second Ca²⁺ and the residues around site I disturb the binding state of site I and weaken its binding ability for the first bound Ca²⁺. Because of the electrostatic repulsion of the second Ca²⁺ and the electrostatic attraction of site II , the first bound Ca²⁺ shifts from site I to site II . Concertedly, the second Ca²⁺ binds to site I , forming a binding state with two Ca²⁺ ions, one at site I and the other at site II . Both of Glu908 and Asp800 coordinate with the two Ca²⁺ ions simultaneously during the concerted binding process, which is believed to be the hinge to achieve the concerted binding. In our simulations, four amino acid residues that serve as the channel to link the outer mouth and the binding sites during the binding process were recognized, namely Tyr837, Tyr763, Asn911, and Ser767. The analyses regarding the activity of the proteins via mutations of some key residues also supported our cooperative mechanism. © 2009 Wiley Periodicals, Inc. J Comput Chem 2009     

一种新型胞内钙离子指示剂的合成、表征及生物性能研究

本文通过在钙离子的螯合母体的结构上引入一个甲基，合成了一种新型钙离子荧光指示剂 Fluo-3M AM，并通过核磁共振氢谱、红外光谱、气相色谱-质谱及飞行时间质谱对其结构进行了充分的表征。同时，还对其荧光光谱及生物活性进行了研究。结果表明：这种新型荧光指示剂对钙离子有较高的亲和性，并且可以获得较强的荧光信号，这对进一步研究生物系统中钙离子的影响将起到非常重要的作用。     

The use of ESI-MS to probe the binding of divalent cations to calmodulin

Proteins have evolved with distinct sites for binding particular metal ions. This allows metalloproteins to perform a myriad of specialized tasks with conformations tailor-made by the combination of its primary sequence and the effect on this of the ligated metal ion. Here we investigate the selectivity of the calcium trigger protein calmodulin for divalent metal ions. This ubiquitous and highly abundant protein exists in equilibrium between its apo and its holo form wherein four calcium ions are bound. Amongst its many functions, calmodulin modulates the calcium concentration present in cells, but this functional property renders it a target for competition from other metal ions. We study the competition posed by four other divalent cations for the calcium binding sites in calmodulin using electrospray ionization mass spectrometry (ESI-MS). We have chosen two other group II cations Mg²⁺, Sr²⁺, and two heavy metals Cd²⁺, Pb²⁺. The ease with which each of these metals binds to apo and to holo CaM[4Ca] is described. We find that each metal ion has different properties with respect to calmodulin binding and competition with calcium. The order of affinity for apo CaM is Ca²⁺ ≫ Sr²⁺ ∼ Mg²⁺ > Pb²⁺ ∼ Cd²⁺. In the presence of calcium the affinity alters to Pb²⁺ > Ca²⁺ > Cd²⁺ > Sr²⁺ > Mg²⁺. Once complexes have been formed between the metal ions and protein (CaM:[xM]) we investigate whether the structural change which must accompanies calcium ligation to allow target binding takes place for a given CaM:[xM] system. We use a 20 residue target peptide, which forms the CaM binding site within the enzyme neuronal nitric-oxide synthase. Our earlier work (Shirran et al. 2005) [1] has demonstrated the particular selectivity of this system for CaM:4Ca²⁺. We find that along with Ca²⁺ only Pb²⁺ forms complexes of the form CaM:4M²⁺:nNOS. This work demonstrates the affinity for calcium above all other metals, but also warns about the ability of lead to replace calcium with apparent ease.     

Environmentally Sensitive Color-Shifting Fluorophores for Bioimaging

We introduce color-shifting fluorophores that reversibly switch between a green and red fluorescent form through intramolecular spirocyclization. The equilibrium of the spirocyclization is environmentally sensitive and can be directly measured by determining the ratio of red to green fluorescence, thereby enabling the generation of ratiometric fluorescent probes and biosensors. Specifically, we developed a ratiometric biosensor for imaging calcium ions (Ca²⁺) in living cells, ratiometric probes for different proteins, and a bioassay for the quantification of nicotinamide adenine dinucleotide phosphate.     

Multimodal Use of New Coumarin‐Based Fluorescent Chemosensors: Towards Highly Selective Optical Sensors for Hg2+ Probing

Despite several types of fluorescent sensing molecules have been proposed and examined to signal Hg²⁺ ion binding, the development of fluorescence‐based devices for in‐field Hg²⁺ detection and screening in environmental and industrial samples is still a challenging task. Herein, we report the synthesis and characterization of three new coumarin‐based fluorescent chemosensors featuring mixed thia/aza macrocyclic framework as receptors units, that is, ligands L1 – L3 . These probes revealed an OFF–ON selective response to the presence of Hg²⁺ ions in MeCN/H₂O 4:1 (v/v), which allowed imaging of this metal ion in Cos‐7 cells in vitro. Once included in silica core–polyethylene glycol (PEG) shell nanoparticles or supported on polyvinyl chloride (PVC)‐based polymeric membranes, ligands L1 – L3 can also selectively sense Hg²⁺ ions in pure water. In particular we have developed an optical sensing array tacking advantage of the fluorescent properties of ligand L3 and based on the computer screen photo assisted technique (CSPT). In the device ligand L3 is dispersed into PVC membranes and it quantitatively responds to Hg²⁺ ions in natural water samples.     

Determination of calcium binding sites in gas-phase small peptides by tandem mass spectrometry

Low-energy (LE) and high-energy (HE) collisionally activated decompositions (CAD) of calcium/peptide complexes of the form [M-H+Ca]⁺ and [M+Ca]²⁺ reflect the site of calcium binding in various gas-phase peptides that are models of the calcium binding site III of rabbit skeletal troponin C. The Ca²⁺ binding sites involve an aspartic acid, glutamic acid, and asparagine, which are in the metal-binding loops of calcium-binding proteins. Both fast atom bombardment (FAB) and electrospray ionization (ESI) were used to generate the metal/peptide complexes. When submitted to LE CAD, ESI-produced Ca²⁺/peptide complexes undergo fragmentations that are controlled by Ca²⁺ binding and provide information on the Ca²⁺ binding site. The LE CAD spectra are simple, indicating that Ca²⁺ binding involves specific oxygen ligands including acidic side chains and that only a few low-energy fragmentation channels exist. The HE CAD spectra of FAB-produced Ca²⁺/peptide complexes are more complex, owing to the introduction of high internal energy into the precursor ion. Interactions of the other alkaline-earth metal ions Mg²⁺ and Ba²⁺ with these peptides reveal that the ligand preferences of these metal ions are slightly different than those of Ca²⁺.     

New ICT probes: synthesis and photophysical studies of N-phenylaza-15-crown-5 aryl/heteroaryl oxadiazoles under acidic condition and in the presence of selected metal ions

Molecular probes 6 and 7, incorporating N-phenylaza-15-crown-5 and aryl/heteroaryl oxadiazole have been designed to function as the new intramolecular charge transfer (ICT) probes. Photophysical properties have been studied under acidic condition as well as in the presence of selected metal ions, Ca²⁺, Ba²⁺, Mg²⁺, Na⁺, K⁺, and Li⁺. The changes in the ICT character of the probes, following the addition of trifluoroacetic acid, were interpreted in terms of site and degree of protonations. Based on the cation affinity, the ICT bands in both UV-vis and emission spectra experienced varying degrees of blue shifts due to removal of the aza-crown ether nitrogen from conjugation. The cation-induced spectral shifts and the stability constants revealed binding strength in the order Ca²⁺>Ba²⁺?Li⁺>Na⁺>K⁺>Mg²⁺. Competitive experiments performed in a matrix of ions also indicated superior interaction of 6 and 7 with Ca²⁺. The excited state decay profiles remained largely unperturbed in the presence of metal ions. The studied probes displayed positive solvatochromism and the Stokes shifts and excited state lifetimes increased with increasing solvent polarity. These findings can be rationalized by invoking highly polar nature of the emittive states. The chemoionophores 6 and 7 constitute potentially interesting Ca²⁺ sensitive probes due to their relatively high binding interaction for Ca²⁺ (log K_s=3.55-3.10) vis-a-vis that of biologically interfering Mg²⁺ (log K_s=1.67-1.30).     

The binding of Ca2+ and Mg2+ to human serium albumin: A calorimetric study

The binding of calcium and magnesium to human serum albumin has been studied in the pH region 2.5–8.0 by a calorimetric procedure. Both metal ions bind to the carboxylate groups of albumin. 36 and 44 carboxylate groups appear to be involved in the binding of Ca²⁺ and Mg²⁺, respectively. Based on previously reported results that twelve Ca²⁺ ions are the maximum which can bind to albumin, the results given here support previous X-ray crystallographic evidence that three carboxylate groups can be involved in the binding of a Ca²⁺ by a protein. The data also confirm that Ca²⁺ and Mg²⁺ binding is competitive. Binding of the cations to the carboxylate groups appears to involve the breaking of carboxylate-imidazole hydrogen bonds in the protein. Log K, ΔH and ΔS values obtained for the binding of metal ions to albumin in aqueous solution at 25°C are 2.72 ± 0.02, 0.0 ± 0.1 kcal/mole, and 12.4 ± 0.3 cal/mole K for Ca²⁺ and 1.12 ± 0.05, ?0.2 ± 0.1 kcal/mole, and 4.5 ± 0.3 cal/mole K for Mg²⁺, respectively.     

Fe-selective naked-eye ‘off–on’ fluorescent probe: its crystal structure and imaging in living cells

Four novel rhodamine-active probes L1–L4 have been proposed and characterized as fluorescent chemosensors for Fe³⁺. An ‘off-on’ type fluorescent enhancement was observed, which was induced by the interactions between Fe³⁺ and the probe, proven to adopt a 1:1 binding stoichiometry. The recognition properties of the target compounds with metal ions have been investigated in methanol–water (1:1, v/v) solution by the fluorescence and ultraviolet spectrum. In addition, a plausible application of probes in the imaging of HepG2 (liver cells) under the condition of reoxygenation (95% air, 5% CO₂) exposed to Fe³⁺ ions was also demonstrated.     

4-Mercaptophenylacetic acid functionalized Mn2+-doped ZnS nanoparticles fluorescence quenching caused by the addition of Cu2+

This paper reports that 4-mercaptophenylacetic acid functionalized Mn²⁺-doped ZnS nanoparticles (4-MPAA-ZnS-Mn²⁺ NPs) as fluorescent probes for the detection of copper ions in solution. The fluorescence quenching was due to the aggregation of copper ions with 4-MPAA-ZnS-Mn²⁺ NPs. These aggregations were confirmed by using UV lamp, UV–visible spectroscopy and dynamic light scattering (DLS). These 4-MPAA-ZnS-Mn²⁺ NPs were applied as fluorescent probes to detect copper ions in aqueous solution.     

Fluorogenic dual click derived bis-glycoconjugated triazolocoumarins for selective recognition of Cu(II) ion

Carbohydrate based fluorescent sensors S1 and S2 have been developed by fluorogenic dual click chemistry and are characterized by various spectroscopic techniques. Both the fluorescent probes displayed highly selective detection of Cu²⁺ ions by means of fluorescence quenching. The job plot experiment suggested 1:1 complexation of probes S1 and S2 with Cu²⁺ ions having detection limit of 6.99 μM and 7.30 μM, respectively. The binding constants for S1-Cu²⁺ and S2-Cu²⁺ complexation were evaluated to be 3.34 × 10³ M⁻¹ and 5.93 × 10³ M⁻¹, respectively.     

A New Fluorescence Turn-On Probe for Aluminum(III) with High Selectivity and Sensitivity,and its Application to Bioimaging

The development of novel selective probes with high sensitivity for the detection of Al³⁺ is widely considered an important research goal due to the importance of such probes in medicine, living systems and the environment. Here, we describe a new fluorescent probe, N′-(4-diethylamino-2-hydroxybenzylidene)-2-hydroxybenzohydrazide (1), for Al³⁺. Probe 1 was evaluated in a solution of acetonitrile/water (1:1 v/v). Compared with previously reported probes for Al³⁺, probe 1 can be synthesized easily and in high yield. A Job plot confirmed that probe 1 is able to complex Al³⁺ in a 1:1 ratio, and the binding constant was determined to be 4.25×10⁸ m⁻¹. Moreover, the detection limit was as low as 6.7×10⁻⁹ m, suggesting that probe 1 has a high sensitivity. Common coexistent metal ions, such as K⁺, Co²⁺, Ca²⁺, Ba²⁺, Ni²⁺, Pb²⁺, Hg²⁺, Ce²⁺, Zn²⁺, Cd²⁺, Fe³⁺, showed little or no interference in the detection of Al³⁺ in solution, demonstrating the high selectivity of the probe. Finally, the ability of probe 1 to act as a fluorescent probe for Al³⁺ in living systems was evaluated in Gram-negative bacteria, Escherichia coli, and confocal laser scanning microscopy confirmed its utility. The results of this study suggest that 1 has appropriate properties to be developed for application as a fluorescent probe of Al³⁺ for use in biological studies.     

Salicylaldehyde hydrazones as fluorescent probes for zinc ion in aqueous solution of physiological pH

Salicylaldehyde hydrazones of 1 and 2 were synthesized and their potential as fluorescent probes for zinc ion was investigated in this paper. Both of the probes were found to show fluorescence change upon binding with Zn²⁺ in aqueous solutions, with good selectivity to Zn²⁺ over other metal ions such as alkali/alkali earth metal ions and heavy metal ions of Pb²⁺, Cd²⁺ and Hg²⁺. They showed 1:2 metal-to-ligand ratio when their Zn²⁺ complex was formed. By introducing pyrene as fluorophore, 2 showed interesting ratiometric response to Zn²⁺. Under optimal condition, 2 exhibited a linear range of 0-5.0 μM and detection limit of 0.08 μM Zn²⁺ in aqueous buffer, respectively. The detection of Zn²⁺ in drinking water samples using 2 as fluorescent probe was successful.     

Investigation of calcium-induced, noncovalent association of calmodulin with melittin by electrospray ionization mass spectrometry

Noncovalent association of Ca²⁺-loaded calmodulin with a target peptide melittin was studied by electrospray ionization mass spectrometry (ESI-MS). ESI-MS does not reveal any binding of the apocalmodulin to the melittin. Partial loading of calmodulin with calcium leads to weak association with melittin. Upon binding of two calcium ions to the protein, changes in the conformation of calmodulin occur; these changes are sufficient to promote binding of melittin. Saturation of the protein with Ca²⁺ (a distribution of up to seven calcium ions is detected) induces a large increase of the binding to melittin. The stoichiometry of peptide binding to calmodulin is 1:1.     

A squaraine-based near IR fluorescent chemosensor for Calcium

A red to NIR emitting, highly Ca²⁺-specific fluorescent chemosensor has been synthesized. In pH 7.2 aqueous buffers, the chemosensor signals Ca²⁺ by a decrease in emission intensity, whereas large excess of Mg²⁺ ions have no effect on either the absorption or the emission spectrum. The chemosensor is likely to be the prototype of a new generation of laser-diode excitable fluorescent chemosensors for Calcium.     

Structure refinements of Pb2+ ion-exchanged apatites by x-ray powder pattern-fitting

The crystal structures of Pb²⁺ ion-exchanged hydroxyapatite (OHAp), chlorapatite (ClAp), and fluorapatite (FAp) in aqueous solutions with low pH value of 3.0 or 4.0 have been investigated by X-ray powder pattern-fitting methods. The site occupancy factors of Pb atoms for the M1 (column site) and M2 sites were determined to be 0.72 and 0.77 for Pb_7.5Ca_2.5OHAp, 0.69 and 0.86 for Pb_7.9Ca_2.1ClAp, and 0.60 and 0.52 for Pb_5.5Ca_4.5FAp, respectively. These results imply that Ca²⁺ ions in calcium hydroxyapatite are exchanged for Pb²⁺ ions in acidic aqueous solution regardless of whether they occupy M1 or M2 sites.     

A highly selective fluorescent sensor for Ca2+ and Sr2+ based on diarylethene with a furan-carbohydrazide unit

A fluorescent sensor based on diarylethene has been designed and synthesized. The sensor not only exhibited excellent photochromic properties, but also has distinguishing ability for Ca²⁺ and Sr²⁺ from other metal ions. Upon addition of Ca²⁺ and Sr²⁺, its emission intensity enhanced 27-fold and 24-fold respectively, accompanied by the emission peak shifted from 439 nm to 484 nm for Ca²⁺, and to 479 nm for Sr²⁺. The 1:1 stoichiometry between the sensor and the two ions was confirmed by Job's plot and HRMS. The LOD for Ca²⁺ and Sr²⁺ was determined to be 9.4 × 10^?8 mol L^?1 and 7.2 × 10^?8 mol L^?1, respectively. Furthermore, the sensor was applied in the detection of Ca²⁺ and Sr²⁺ in practical samples successfully.     

New coumarin-based sensor molecule for magnesium and calcium ions

A new coumarin-based sensor molecule (L₁) has been synthesized and this was found to bind calcium and magnesium ions more effectively as compared to other alkali/alkaline earth/lanthanide and certain transition metal ions. A significant enhancement in fluorescence intensity was observed on binding to Ca²⁺ and Mg²⁺ ions; while a minor quenching was observed for weakly bound Hg²⁺, Ni²⁺, Fe³⁺, and Co²⁺ ions. PET process, coupled with the ICT process, is proposed to explain the observed spectral response.     

Turn-on fluorescent probe for Zn2+ ions based on thiazolidine derivative

In this study, simple on–off fluorescent/UV–visible (UV–Vis) probes were easily prepared using 2-(2-hydroxyphenyl)thiazolidine-4-carboxylic acid ( Sen-1 ) and/or 2-(2-hydroxy-5-nitrophenyl)thiazolidine-4-carboxylic acid ( Sen-2 ) for fast detection of Zn²⁺ ions. Their sensing properties towards common metal ions were investigated using UV–Vis and fluorescence spectroscopies. Sen-1 and Sen-2 displayed a significant change with the addition of Zn²⁺ ions in the UV–Vis spectra. The addition of Zn²⁺ ions induced a 104 nm bathochromic shift for Sen-1 . The binding ratio towards Zn²⁺ metal ions was determined to be 1:1 by using Job plot analysis and fluorescence spectroscopy. The association constant and free energy (ΔG) of Sen-1 and Sen-2 towards Zn²⁺ ions were calculated by the Benesi–Hildebrand equation. The limit of detection of Sen-1 towards Zn²⁺ ions is 3.73 × 10⁻⁸ M, which is about 1/100 of the value recommended by the World Health Organization for drinking water. Sen-1 was successfully applied to detect Zn²⁺ ions in water samples and the fluorescence test strip was prepared for visual detection of Zn²⁺ ions. Finally, the quantum chemical parameters of Sen-1 and Sen-2 , such as highest occupied molecular orbital, lowest unoccupied molecular orbital, and chemical hardness, were investigated by the Becke, three-parameter, Lee–Yang–Parr, Hartree–Fock, and M062x methods.