N?H···S and S?H···N intramolecular hydrogen bond in β‐thioaminoacrolein: A quantum chemical study

The conformational study of β‐thioaminoacrolein was performed at various theoretical levels, HF, B3LYP, and MP2 with 6‐311++G(d,p) basis set, and the equilibrium conformations were determined. To have more reliable energies, the total energies of all conformers were recomputed at high‐level ab initio methods, G2MP2, G3, and CBS‐QB3. According to these calculations, the intramolecular hydrogen bond is accepted as the origin of conformational preference in thialamine (TAA) and thiolimine groups. The hydrogen bond strength in various resonance‐assisted hydrogen bond systems was evaluated by HB energy, geometrical parameters, topological parameters, and charge transfers corresponding to orbital interactions. Furthermore, our results reveal that the TAA tautomer has extra stability with respect to the other tautomers. The population analyses of the possible conformations by NBO predict that the origin of this preference is mainly due to the π‐electron delocalization in framework of TAA forms, especially usual π_C?C → π*_C?S and Lp (N) → π*_C?C charge transfers. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

A Quantum Chemical Study of Various Intramolecular Hydrogen Bonds in 4-Amino-3-Pentene-2-Thial

B3LYP and MP2 methods with the most popular basis set, 6-311++G(d,p) are applied to optimize the equilibrium conformers of 4-amino-3-pentene-2-thial. Furthermore, to have more reliable energies, the total electron energies of all forms are recomputed at the CBS-4M level of theory. A theoretical investigation of the equilibrium conformers clearly shows that various intramolecular hydrogen bonds (IHBs) such as N–H...S, S–H...N, S–H...π, C–H...N, and C–H...S are the most effective factors in the conformational preference of thialamine, thiolimine, and thialimine groups. Hence, the IHB strengths are evaluated in various resonance-assisted hydrogen bond systems by geometrical factors, topological parameters, and charge transfers corresponding to orbital interactions. Also, the solvent effect on the IHB strength is considered using Tomasi′s PCM. Our results in the gas phase reveal that the thialamine group has extra stability with respect to thiolimine and thialimine ones. The population analyses of all the possible conformers by the NBO method predict that the origin of this tautomeric preference is mainly due to more significant π electron delocalization in the framework of thialamine forms, especially π_C=C → π _{C = S}^* and Lp(N) → π _{C = C}^* charge transfers. Moreover, the excited state properties of IHBs in these systems are investigated theoretically using the time-dependent DFT method.     

A theoretical study on the protonation of cycloalkanes CnH2n (n = 3 to 6)

Ab initio self-consistent-field molecular orbital calculations have been carried out for the C_nH_2n (n = 3 to 6) cycloalkanes and various conformers of their protonated forms. The calculated protonation energies for the sequence of conformers of the protonated forms follow the experimentally observed trend. Correlations between optimum C? C? C bond angles at the protonation site and the calculated protonation energies have been observed, and these correlations may be of some use in estimating protonation energy-bond angle relations in other (strained) cyclic compounds when the central carbon atom of a C? C? C moiety is protonated.     

Telomerization Studies with Allyl Ethene Sulfonate and Allyl Allyl Sulfonate

Telomerization of allyl ethene sulfonate (AES) in the presence of butyl mercaptan yielded a mixture of two products: the first was a five-membered ring sultone containing a sulfide group and the second a five-membered ring sulfonium salt formed by reaction of the sultone of the Just product with its own sulfide function. If cyclotelomerizations and cyclopolymerizations give the same ring structures, these results indicate that the cyclic units in poly-AES are five-membered rings. Telomerization of allyl allyl sulfonate (AAS) in the presence of butyl mercaptan yielded a mixture of two products formed by addition of butyl mercaptan to one of the two allyl functions. Telomerization of AAS in bromotrichloromethane yielded a small amount of 1,5-hexachIoro-3-bromopentane formed via fission of an oxygen-carbon bond, and a rearranged adduct. The rearrangement of the allyl group to a propenyl group in the case of AAS was not observed when allyl ethane sulfonate or propyl allyl sulfonate were telomerized under the same conditions. Therefore a mechanism is proposed in which the rearrangement of the allyl double bond in AAS is due to the presence of a second double bond in the same molecule. This observation also indicates that poly-AAS might have a more complicated structure than expected from a simple cyclopolymerization mechanism.     

Energetic stability and electronic properties of exohedral derivatives of C20: C20Xn (X = H,F, Cl; n = 1–4)

Exohedral derivatives of the smallest fullerene, C₂₀, with the general formula of C₂₀X_n (X = H, F, Cl; n = 1–4) have been systematically investigated to evaluate the energetic stability of these molecular structures and determine their respective electronic properties. Analysis of the theoretical results indicate that the addition of exohedral atoms increase the stability of the caged‐structure to varying degrees according to the predicted HOMO‐LUMO gaps, ionization energies, and electron affinities. Further support for increasing stability is deduced from the calculated reaction and binding energies of the exohedral atoms. © 2012 Wiley Periodicals, Inc.     

Effects of polysulfides on the polymerization of methyl methacrylate

The effect of organic sulfur compounds on the radical polymerization of methyl methacrylate initiated by azobisisobutyronitrile at 50°C. has been studied. The sulfur compounds used were benzene-type polysulfides (C₆H₅CH₂? S_n? CH₂C₆H₅; n = 0–4), benzyl mercaptan, and sulfur (S₈). All sulfur compounds studied, except dibenzyl, dibenzyl monosulfide, and dibenzyl disulfide, were found to behave as retarders under these experimental conditions. Chain-transfer constants of these compounds were determined from rate measurements and from the conventional method based on numberaverage degree of polymerization. Chain-transfer constants of benzyl-type polysulfides were less than those of mercaptan and sulfur and increased with increasing sulfur. The correlation of the reactivities of sulfur compounds as transfer agents and their molecular structures is discussed.     

Interpretation of vibrational and NMR spectra of allyl acrylate: An evidence for several conformers

The mid-IR, far-IR, and Raman spectra of allyl acrylate were measured and interpreted with support of the B3LYP/aug-cc-pVDZ calculated anharmonic vibrational spectra followed by the potential energy distribution analysis. The experimental ¹H and ¹³C NMR spectra of allyl acrylate dissolved in CDCl₃ or C₆D₆ were interpreted by means of the B3LYP/aug-cc-pVDZ-su2 calculated NMR chemical shifts and J(¹H,¹H) and J(¹H,¹³C) coupling constants. Exactly ten stable allyl acrylate conformers (five s-cis and five s-trans) were found after careful B3LYP/aug-cc-pVDZ and MP2/aug-cc-pVDZ scan of the conformational space. The experimental IR and Raman spectra are in good agreement with the theoretical spectra of the most stable conformers 1 with a presence of the second stable conformer 2, both exhibiting cis arrangement of the acrylic moiety. There are however two bands in the IR spectra, at ca. 1270 and 1260 cm⁻¹, that definitely indicate the conformers with trans arrangement of the acrylic moiety to be present in liquid allyl acrylate. The bands at ca. 2990 and 1650 cm⁻¹ are suggested to be due to Fermi resonances engaging CH and CC stretching vibrations, respectively. The careful inspection of the room temperature ¹H and ¹³C NMR spectra of allyl acrylate suggest that a dominating form of the allyl acrylate molecule in an inert solvent exhibits the cis conformation of the acrylic moiety and an extended allyl group.     

From Very Strong to Inexistent Be−Be Bonds in the Interactions of Be2 with π-Systems

Isolated Be₂ is a typical example of a weakly bound system, but interaction with other systems may give rise to surprising bonding features. The interactions between Be₂ and a set of selected neutral C_nH_n (n=2–8) π-systems have been analyzed through the use of G4 and G4MP2 ab initio methods, along with multireference CASPT2//CASPT2 calculations. Our results systematically show that the C_nH_n−Be₂−C_nH_n clusters formed are always very stable. However, the nature of this interaction is completely different when the π-system involved is a closed shell species (n=2, 4, 6, 8), or a radical (n=3, 5, 7). In the first case, the interaction does not occur with the π-system as a whole, but with specific C centers yielding rather polar but strong C−Be bonds. Nonetheless, although the Be−Be distances in these complexes are similar to the ones in compounds with ultra-strong Be−Be bonds, a close examination of their electron density distribution reveals that no Be−Be bonds exist. The situation is totally different when the interaction involves two π-radicals, C_nH_n−Be₂−C_nH_n (n=3, 5, 7). In these cases, a strong Be−Be bond is formed. Indeed, even though Be is electron deficient, the Be₂ moiety behaves as an efficient electron donor towards the two π-radicals, so that the different C_nH_n−Be₂−C_nH_n (n=3, 5, 7) clusters are the result of the interaction between Be₂²⁺ and two L⁻ anions. The characteristics of these two scenarios do not change when dealing with bicyclic π-compounds, such as naphthalene and pentalene, because the interaction with the Be₂ moiety is localized on one of the unsaturated cycles, the other being almost a spectator.     

Theoretical Studies on the Structure and Spectrum of Imidazole-Chloranil Charge Transfer Complex

UV-Vis absorption spectra of the molecular complex formed by imidazole (Im) and chloranil (CA) were measured in chloroform. The stoichiometry of the imidazole-chloranil (Im-CA) complex was determined as 1:1 by applying Benesi-Hildebrand's equation and Job's continuous variation method. Density function theory (DFT) and MP2 calculations were performed to study the structures and the binding energies of the Im-CA complex. The calculations located four conformations (denoted as S1-S4) for the Im-CA complex, two edge(Im)-to-face(CA) linked and two edge(Im)-to-edge(CA) linked. It was found that the edge-to-face conformers are more stable than the edge-to-edge ones. The bonding characteristics of these conformers were investigated with natural population analysis (NPA), topological analysis of electron density, and natural bond orbital (NBO) analysis. It was revealed that the edge-to-face conformers are charge-transfer (CT) complexes whereas the edge-to-edge conformers are the hydrogen bond complexes. For the most stable conformation of the Im-CA complex (S1), the charge transfer interaction of the imidazole n(N15) lone pair orbital with the chloranil ∏*(C1=O7) orbital plays a crucial role in the Im-CA binding, and the binding is further strengthened by the O7… H20 hydrogen bond. The electronic excitation energies of the complex (S1) were calculated with time-dependent DFT (TDDFT), and the observed UV-Visible spectrum of the complex was analyzed based on the computed results.     

The electronic structure of all-trans-polyenes C2nH2n+2, n = 3–7

The electronic structure of the C_2nH_2n+2 trans-polyenes, n = 3–7, is calculated by the Discrete Variational X_α method (DVM -X_α). The valence ionization potentials (IP ) calculated using the Clementi double zeta basis agree with the known experimental data within several tenths an electron volt. However, the DVM energies of the π → π* optical excitations are systematically underestimated by 0.8–1.0 eV. For polyenes with equal C—C bond lengths, the computed energies of the first optical transitions are smaller than those of polyenes with alternating C—C bond lengths. The charge distribution in polyenes is analyzed in the framework of a Mulliken scheme. The composition of the frontier molecular orbitals (MO ) is analyzed.     

Molecular Structure and Conformational Composition of 1-[(Methylthio)methyl]-2-nitrobenzene (MTMNB): A Theoretical and Experimental Study

The conformational composition of gaseous MTMNB and the molecular structures of the rotational forms have been studied by electron diffraction at 130^∘C aided by results from ab initio and density functional theory calculations. The conformational potential energy surface has been investigated by using the B3LYP/6-31G(d,p) method. As a result, six minimum-energy conformers have been identified. Geometries of all conformers were optimized using MP2/6-31G(d,p), B3LYP/6-31G(d,p), and B3LYP/cc-pVTZ methods. These calculations resulted in accurate geometries, relative energies, and harmonic vibrational frequencies for all conformers. The B3LYP/cc-pVTZ energies were then used to calculate the Boltzmann distribution of conformers. The best fit of the electron diffraction data to calculated values was obtained for the six conformer model, in agreement with the theoretical predictions. Average parameter values (r_a in angstroms, angle α in degrees, and estimated total errors given in parentheses) weighted for the mixture of six conformers are r(C–C) = 1.507(5), r(C–C)_{ring, av} = 1.397(3), r(C–S)_av = 1.814(4), r(C–N) = 1.495(4), r(N–O)_av = 1.223(3), ∠(C–C–C)_ring = 116.0–122.5, ∠ C6–C4–C7 = 118.2(4), ∠ C–C–S = 113.6(6), ∠ C–S–C = 98.5(12), ∠ N–C–C4 = 121.9(3), ∠(O–N–C)_av = 116.8(3), ∠ O–N–O = 127.0(4). Torsional angles could not be refined. Theoretical B3LYP/cc-pVTZ torsional angles for the rotation about C–N bond, φ_C−N, were found to be 30.5–36.5^∘ for different conformers. As to internal rotation about C–C and C–S bonds, values of φ_C−C = 68–118^∘ and φ_C−S = 66–71^∘ were obtained for the three most stable conformers with gauche orientation with respect to these bonds. Some conclusions of this work were presented in a short communication in Russ. J. Phys. Chem. 2005, 79, 1701.     

Syntheses of Seven- and Five-Membered Rings from Allyl Cations

The cycloaddition of allyl cations to conjugated dienes offers an efficient and general tool for the construction of seven-membered carbocycles. The silver salt route is highly suitable for generating allyl cations and can be used even in most difficult cases, i. e. for elusive and intractable allyl cations such as 2-methylallyl, 2-methoxyallyl, and the parent allyl cation. Cycloadditions to the 2-methoxyallyl cation come very close to the prototype of a 6π, 7C reaction, since the carbonyl group introduced into the new ring can either be used for further transformations or be removed altogether. The combination of an allyl cation with π reactants, especially conjugated dienes, is a powerful and strongly convergent synthetic method since it permits one-step assembly, from a C₃ and a C₄ unit, of a cluster of up to four chiral centers in a ring which is larger than six-membered. Allyl cations combine with electron-rich 2π systems to form novel five-membered rings. The nature of the organometallic intermediates has been elucidated in many cases.     

Structures and energies of seleno derivatives of biuret.Ab Initio comparative studies of diselenobiuret, selenobiuret, and selenothiobiuret

Ab initio studies (LCAO-MO method) on conformers of three seleno derivatives of the biuret molecules diselenobiuret [I], selenobiuret [II], and selenothiobiuret [III] were carried out at the Hartree-Fock (HF) and MP2 levels. The molecular geometries of these species were fully optimized at the HF level and characterized by analysis of the harmonic vibrational frequencies using a split-valence triple-zeta basis set augmented by a set ofd polarization functions on heavy atoms andp polarization functions on hydrogen atoms [TZP(d, p)]. The total energies of the HF-optimized structures were calculated at the MP2 (frozen core) level using a larger TZP (2df, 2pd) basis set. The potential energy searches revealed a total of 11 minimum-energy conformers (assigned astrans-trans, trans-cis, cis-trans, andcis-cis) and seven transition-state species for the title molecules. The two predicted conformers for diselenobiuret (Ia=trans-trans andIc=cis-cis) are characterized byC ₂ and the third byC _s symmetry. For selenothiobiuret two forms (IIIa=trans-trans andIIId=cis-cis) possessC ₁ and two (IIIb=trans-cis andIIIc=cis-trans) possessC _s symmetries, respectively. For selenobiuret, four formsIIa=trans-trans (C₁),IIb=trans-cis (C _s),IIc=cis-trans (C ₁), andIId=cis-cis (C₁), were obtained as a result of gradient optimization. Comparison of the relative energies for the considered species indicated that thecis-trans forms are the most stable conformations for all three systems at both the HF and MP2 levels of theory.     

Quantum-Chemical Study of Electronic and Steric Structure of Vinyltetrazoles: I. 2-Substituted 5-Vinyltetrazoles

The total Mulliken charges on the carbon atoms of the vinyl group, populations of S-trans-(N¹)conformers, and internal rotation energies were calculated ab initio (HF/6-31G**, MP2/6-31G**, and MP2/6-31G**//AM1) for a series of 2R-5-vinyltetrazoles (R = CH₃, C₂H₅, i-C₃H₇, t-C₄H₉, C₆H₅). The calculation results were compared to the available experimental data.     

A quantum mechanical study of bioactive 3-chloro-2,5-dihydroxybenzyl alcohol through substitutions

Electronic structures, vibrational and ionization spectra of 3-chloro-2,5-dihydroxybenzyl alcohol (CHBA), a novel bioactive benzene derivative from marine fungi, are presented in this study using quantum mechanical methods such as density functional theory and outer valence Green function method. A number of related benzene derivatives such as chlorobenzene, 3-chlorobenzyl alcohol, hydroquinone and chlorohydroquinone are also studied, in order to assist our understanding of the structure, properties and interactions of CHBA. Vibrational spectra such as infrared (IR) and Raman spectra reveal signatures of the functional group substitutions and their hydrogen bond interactions in CHBA. Solvent effects on the IR spectra of CHBA with polar and non-polar solvents are simulated using the polarizable continuum model (PCM) and cause redshifts of some of the IR spectral frequencies with respect to the gas phase values at both ends of the 400?C4,000?cm^?1 region. The inner-shell ionization spectra, in particular the C?CK spectra of the benzene derivatives, reveal detailed chemical environmental changes of the carbon and oxygen atoms due to the substitutions. The valence ionization energies of the highest occupied molecular orbital (HOMO) and the 3rd HOMO, (HOMO-2) of the benzene derivatives respond significantly to the substitutions, whereas the charge distributions of the HOMO and 2nd HOMO (HOMO-1) do not change significantly from their benzene counterparts. As a result, the 3rd HOMO changes significantly in both ionization energies and the charge distributions, which can serve as a signature of the substitutions among the benzene derivatives.     

A gas-phase electron diffraction study of the molecular structure of tetravinylsilane

The molecular structure of tetravinylsilane has been studied by gas-phase electron diffraction. The radial distribution curve suggests the absence of conformers having vinyl double bonds staggered with respect to the SiC₄ skeleton. Of the eclipsed or approximately-eclipsed conformers, the one with S₄ symmetry gives the best fit with experiment, although a small admixture of a C₁ conformation cannot be ruled out. Least-squares refinement gave the following values for the independent structural parameters (lengths, r_a basis; angles, r_α basis): C-H = 1.118 ± 0.003 Å, CC = 1.355 ± 0.002 Å, Si-C = 1.855 ±0.002 Å, ∠SiCC = 124.0 ± 0.3°, ∠SiCH = 118.4 ± 1.0°, torsion angles CSiCC are 17.5 ± 0.6° from the eclipsed conformation. During the refinement the vibrational amplitudes u and perpendicular amplitude corrections K were held constant at calculated values. The CC bond length provides evidence of interaction between the vinyl π-bonds and the vacant d-orbitals of silicon.     

Ab initio molecular orbital calculations for 3,6-dihydro-1,2-dithiin and 3,6-dihydro-1,2-dioxin

Optimized geometries and total energies for the conformers of 3,6-dihydro-1,2-dithiin ( 2 ) and 3,6-dihydro-1,2-dioxin ( 3 ) were calculated at several ab initio MO levels: RHF/3-21G(*), RHF/6-31G*, MP2/6-31G*, and MP2/6-31G*/ /RHF/3-21G(*). For the dioxin, in addition to the above levels the corresponding nonextended basis sets ab initio methods were also carried out. The dithiin results are compared with those of simple disulfanes, HSSH and (CH₃)₂S₂, whose optimized geometries agree closely with the observed structures, which is the gauche (C₂ symmetry). For the disulfanes, the gauche geometries from RHF/3-21G(*) are in good agreement with the observed structure while the RHF/3-21G results best fit the dioxin. Pertinent structural data at the RHF/3-21G(*) for the half-chair (C₂) dithiin are: bond lengths, ? SS? , ? CS? , ? CC?, and ? C?C? , 2.050, 1.817, 1.515, and 1.317 Å, respectively; bond angles, CSS, ?CCS, and C?CS, 98.0, 114.2, and 127.8°, respectively; CSSC dihedral angle of 63.2°; and twist angle of 36.5°. The total energy for half-chair dithiin at MP2/6-31G*//RHF/3-21G(*) is less than the planar (C_2v) and the half-boat (C_s) structures by 69.67 and 29.05 kJ/mol, respectively. The calculated structural data (vs. observed) at RHF/3-21G for the half-chair dioxin are: bond lengths, ? OO? , ? CO? , ? CC?, and C?C, 1.464 (1.463), 1.454, 1.509, and 1.313 Å (1.338 Å), respectively; bond angles, COO, ?CCO, and C?CO, 105.0, 109.8 (110.3), and 120.7° (119.9°), respectively; COOC dihedral angle of 79.7° (80 ± 2°); and twist angle of 39.0 (38.3°). The total energy for half-chair dioxin at MP2/6-31G//RHF/3-21G is less than the planar and the half-boat structures by 70.35 and 42.85 kJ/mol, respectively. The total energies calculated at the extended basis sets (*) ab initio levels for the C₂ symmetry dioxin are much lower than those of the nonextended basis sets. © John Wiley & Sons, Inc.     

Contributions to the chemistry of silicon-sulfur compounds. Part 58

The deviation from tetrahedral configuration at the silicon atom has been studied by modified EHT calculations. The geometry and energy of spiranes M(S₂C₂H₄)₂, M=C, Si were optimized with bond lengths constrained at experimental values starting from experimental or assumed geometry. Additionally Si(SR)₄, R=H, CH₃ as model compounds, have been studied with EHT. Full geometry optimizations with MM2 were also carried out for spiranes M(E₂C₂R₄)₂ and M(E₂C₂H₂)₂, M=C, Si, Ge, E = O, S, Se and R=H, CH₃. The performed MM2 calculations gave no evidence for significant deviation from the ideal spiro configuration. The EHT calculations, on the other hand, show that D₂ conformers of Si(S₂C₂H₄)₂ and Si(SR)₄ are the most stable in somewhat distorted conformation because of the operation of an anomeric effect. The anomeric interactions in S₄ conformers do not cause those spiro angle deviations. The energy differences between D₂ and S₄ conformers are small. The existence of S₄ conformers has been predicted in vapor phase by comparison of the observed and calculated splittings of lone pair ionization potentials.Presented as a poster at 10th IUPAC Conference on Physical Organic Chemistry 5–10 August 1990, Haifa, Israel. For Part 57, see ref. [1].     

Micelle Formation and Aggregate Morphology Transition from Vesicle to Rod Micelle for Allyl Alkyldimethylammonium Bromide Cationic Surfactant

A series of cationic surfactants of allyl alkyldimethylammonium bromide (AA_nDB), where n=12, 16, 18, were synthesized, and the adsorption behavior of AA_nDB at the air–water interface and the aggregation morphology in bulk solution were reported. The critical micelle concentration (CMC) was determined by the drop volume technique and steady state fluorescence. The surface excess concentration of AA_nDB surfactants was calculated from the surface tension versus log concentration curves by applying the Gibbs' adsorption isotherm. The values of surface area per molecule calculated by using Gibbs' equation were 2.9–1.4 nm², indicating the relatively large size of the AA_nDB surfactants. Dynamic light scattering (DLS) and transmission electron microscopy (TEM) measurements reveal that, at low surfactant concentration of allyl dodecyl dimethylammonium bromide (AA₁₂DB) above CMC, vesicles can be spontaneously formed. However, with increasing surfactant concentration, vesicles tend to be transformed into rod‐like micelles.     

Ab initio and DFT studies on 1-(thionitrosomethylene) hydrazine: conformers, energies, and intramolecular hydrogen-bond strength

In the current study, we present an intramolecular HB, molecular structure, π-electrons delocalization and vibrational frequencies analysis of 25 possible conformers of 1-(thionitrosomethylene) hydrazine by means of DFT (B3LYP), MP2 methods in conjunction with the 6-311++G** and augmented correlation-consistent polarized-valence triple-zeta basis sets and G2MP2 theoretical level. The influence of the solvent on the stability order of conformers and the strength of intramolecular hydrogen-bonding was considered using the Tomasi’s polarized continuum model. Statistical analyses of quantitative definitions of aromaticity, nucleus independent chemical shift, harmonic oscillator model of aromaticity, aromatic fluctuation index, and the π-electron delocalization parameter (Q) as a geometrical indicator of a local aromaticity, evaluated for this conformers. Further verification of the obtained transition state structures were implemented via intrinsic reaction coordinate (IRC) analysis. Calculations of the ¹H NMR chemical shift at GIAO/B3LYP/6-311++G** levels of theory are also presented. The calculated highest occupied molecular orbital (MO) and lowest unoccupied MO energies show that charge transfer occur within the molecule. Hydrogen-bond energies for H-bonded conformers were obtained from Espinosa method and the natural bond orbital theory and the atoms in molecules theory were also applied to get a more precise insight into the nature of such H-bond interactions.