Mechanistic studies on the binding of nitric oxide to a synthetic heme-thiolate complex relevant to cytochrome p450

The synthetic heme-thiolate complex (SR) in methanol binds nitric oxide (k(on) = (2.7 +/- 0.2) x10(6) M(-)(1) s(-)(1) at 25 degrees C) to form SR(NO). The binding of NO to the SR complex in a noncoordinating solvent, such as toluene, was found to be almost 3 orders of magnitude faster than that in methanol. The activation parameters DeltaH(), DeltaS(), and DeltaV() for the formation of SR(NO) in methanol are consistent with the operation of a limiting dissociative mechanism, dominated by dissociation of methanol in SR(MeOH). In the presence of an excess of NO, the formation of SR(NO) is followed by subsequent slower reactions. The substantially negative activation entropy and activation volume values found for the second observed reaction step support an associative mechanism which involves attack of a second NO molecule on the thiolate ligand in the initially formed SR(NO) complex. The following slower reactions are strongly accelerated by a large excess of NO or by the presence of NO(2)(-) in the SR/NO reaction mixture. They can be accounted for in terms of dynamic equilibria between higher nitrogen oxides (NO(x)()) and reactive SR species, which lead to the formation of a nitrosyl-nitrite complex of SR(Fe(II)) as the final product. This finding is clearly supported by laser flash photolysis studies on the SR/NO reaction mixture, which do not reveal simple NO photolabilization from SR(Fe(III))(NO), but rather involve the generation of at least three photoinduced intermediates decaying with different rate constants to the starting material. The species formed along the proposed reaction pathways were characterized by FTIR and EPR spectroscopy. The results are discussed in terms of their relevance for the biological function of cytochrome P450 enzymes and in context of results for the reaction of NO with imidazole- and thiolate-ligated iron(III) hemoproteins.     

Structural, electronic, optical, and chiroptical properties of small thiolated gold clusters: the case of Au6 and Au8 cores protected with dimer [Au2(SR)3] and trimer [Au3(SR)4)] motifs

We report results of a theoretical study, based on density functional theory (DFT), on the structural, electronic, optical, and chiroptical properties of small thiolated gold clusters, [Au(n)(SR)(m) (n = 12-15, 16-20; m = 9-12, 12-16)]. Some of these clusters correspond to those recently synthesized with the surfactant-free method. To study the cluster physical properties, we consider two cluster families with Au(6) and Au(8) cores, respectively, covered with dimer [Au(2)(SR)(3)] and trimer [Au(3)(SR)(4)] (CH(3) being the R group) motifs or their combinations. Our DFT calculations show, by comparing the relaxed structures of the [Au(6)[Au(2)(SR)(3)](3)](+), [Au(6)[Au(2)(SR)(3)](2)[Au(3)(SR)(4)]](+), [Au(6)[Au(2)(SR)(3)][Au(3)(SR)(4)](2)](+), and [Au(6)[Au(3)(SR)(4)](3)](+) cationic clusters, that there is an increasing distortion in the Au(6) core as each dimer is replaced by a longer trimer motif. For the clusters in the second family, Au(8)[Au(3)(SR)(4)](4), Au(8)[Au(2)(SR)(3)][Au(3)(SR)(4)](3), Au(8)[Au(2)(SR)(3)](2)[Au(3)(SR)(4)](2), Au(8)[Au(2)(SR)(3)](3)[Au(3)(SR)(4)], and Au(8)[Au(2)(SR)(3)](4), a smaller distortion of the Au(8) core is observed as dimer motifs are substituted by trimer ones. An interesting trend emerging from the present calculations shows that as the number of trimer motifs increases in the protecting layer of both Au(6) and Au(8) cores, the average of the interatomic Au(core)-S distances reduces. This shrinkage in the Au(core)-S distances is correlated with an increase of the cluster HOMO-LUMO (H-L) gap. From these results, it is predicted that a larger number of trimer motifs in the cluster protecting layer would induce larger H-L gaps. By analyzing the electronic transitions that characterize the optical absorption and circular dichroism spectra of the clusters under study, it is observed that the molecular orbitals involved are composed of comparable proportions of orbitals corresponding to atoms forming the cluster core and the protecting dimer and trimer motifs.     

Cobalt analogues of Roussin's red salt esters: a density functional study

Density functional theory calculations on the Co(2)(NO)(4)(SR)(2) compounds (R = CH(3), CF(3) and C(4)H(9)) predict butterfly and open isomeric structures with and without a direct Co-Co bond. The open Co(2)(NO)(4)(SR)(2) structures are favored over the butterfly isomers, in terms of relative energy. Furthermore the open structures are predicted to have approximately twice as large HOMO-LUMO gaps than the butterfly Co(2)(NO)(4)(SR)(2) isomers. For the related Co(2)(CO)(6)(SR)(2) species, competing open and butterfly structures with similar HOMO-LUMO gaps were predicted. This could explain why the Co(2)(NO)(4)(μ-SR)(2) compounds have already been synthesized and why no genuine Co(2)(CO)(6)(SR)(2) derivatives have yet been reported.     

化学体系随机共振现象的理论研究

化学体系中随机共振现象的特性、机理、本质和应用的研究是非常重要的前沿课题。综述中国科学技术大学非线性化学实验室,在化学体系随机共振现象的理论研究中,所取得的主要成果,并阐述化学体系随机共振现象研究中所提出来的若干重要问题：非均相化学体系中随机共振;化学体系中内信号随机共振;化学体系中多重随机共振;化学体系中随机共振的调制;化学体系中色噪声作用下的随机共振;化学体系中时空随机共振;耦合化学体系中随机共振;化学体系中双参量随机共振。     

Spectroscopic and Mechanistic Studies on Oxidation Reactions Catalyzed by the Functional Model SR Complex for Cytochrome P450: Influence of Oxidant,Substrate, and Solvent

Kinetic and mechanistic studies on the formation of an oxoiron(IV) porphyrin cation radical bearing a thiolate group as proximal ligand are reported. The SR complex, a functional enzyme mimic of P450, was oxidized in peroxo‐shunt reactions under different experimental conditions with variation of solvent, temperature, and identity and excess of oxidant in the presence of different organic substrates. Through the application of a low‐temperature rapid‐scan stopped‐flow technique, the reactive intermediates in the SR catalytic cycle, such as the initially formed SR acylperoxoiron(III) complex and the SR high‐valent iron(IV) porphyrin cation radical complex [( SR ^.+)Fe^IV?O], were successfully identified and kinetically characterized. The oxidation of the SR complex under catalytic conditions provided direct spectroscopic information on the reactivity of [( SR ^.+)Fe^IV?O] towards the oxidation of selected organic substrates. Because the catalytically active species is a synthetic oxoiron(IV) porphyrin cation radical bearing a thiolate proximal group, the effect of the strong electron donor ligand on the formation and reactivity/stability of the SR high‐valent iron species is addressed and discussed in the light of the reactivity pattern observed in substrate oxygenation reactions catalyzed by native P450 enzyme systems.     

苦参碱和槐定碱在多刺激响应性水凝胶薄膜电极上的可调控电化学行为及其逻辑门构建

采用苦参碱(Matrine, MT)和槐定碱(Sophoridine, SR)作为电活性药物分子探针, 考察了聚(N-异丙基)丙烯酰胺(PNIPAM)水凝胶薄膜的刺激响应特性; 并通过循环伏安(CV)法和扫描电子显微镜(SEM)研究了PNIPAM在不同外界刺激条件(如温度、 盐浓度和甲醇)下结构的改变. 在25 ℃时, 药物分子MT和SR在玻碳电极上产生较大的氧化峰电流, 随着温度升高至40 ℃, 药物分子探针的氧化峰电流逐渐减小. 考察了不同Na₂SO₄浓度和不同比例甲醇对PNIPAM水凝胶薄膜的影响, 发现MT和SR的氧化峰电流随着Na₂SO₄浓度(00.45 mol/L)和甲醇比例(040%)的升高而减小. 结果表明, MT和SR可作为分子探针研究PNIPAM水凝胶薄膜对环境的三重刺激响应性开关行为, 并可进一步构筑3-输入/2-输出的逻辑门系统.     

Interlocked catenane-like structure predicted in Au24(SR)20: implication to structural evolution of thiolated gold clusters from homoleptic gold(I) thiolates to core-stacked nanoparticles

Atomic structure of a recently synthesized ligand-covered cluster Au(24)(SR)(20) [J. Phys. Chem. Lett., 2010, 1, 1003] is resolved based on the developed classical force-field based divide-and-protect approach. The computed UV-vis absorption spectrum and powder X-ray diffraction (XRD) curve for the lowest-energy isomer are in good agreement with experimental measurements. Unique catenane-like staple motifs are predicted for the first time in core-stacked thiolate-group (RS-) covered gold nanoparticles (RS-AuNPs), suggesting the onset of structural transformation in RS-AuNPs at relatively low Au/SR ratio. Since the lowest-energy structure of Au(24)(SR)(20) entails interlocked Au(5)(SR)(4) and Au(7)(SR)(6) oligomers, it supports a recently proposed growth model of RS-AuNPs [J. Phys. Chem. Lett., 2011, 2, 990], that is, Au(n)(SR)(n-1) oligomers are formed during the initial growth of RS-AuNPs. By comparing the Au-core structure of Au(24)(SR)(20) with other structurally resolved RS-AuNPs, we conclude that the tetrahedral Au(4) motif is a prevalent structural unit for small-sized RS-AuNPs with relatively low Au/SR ratio. The structural prediction of Au(24)(SR)(20) offers additional insights into the structural evolution of thiolated gold clusters from homoleptic gold(I) thiolate to core-stacked RS-AuNPs. Specifically, with the increase of interfacial bond length of Au(core)-S in RS-AuNPs, increasingly larger "metallic" Au-core is formed, which results in smaller HOMO-LUMO (or optical) gap. Calculations of electronic structures and UV-vis absorption spectra of Au(24)(SR)(20) and larger RS-AuNPs (up to ~2 nm in size) show that the ligand layer can strongly affect optical absorption behavior of RS-AuNPs.     

Preparation of Semi—interpenetrating Polymer Network of Silicon Rubber and Poly （methyl methylacrylate） Using Supercritical CO2

The heterogeneous free-radical polymerization of methyl methylacrylate(MMA) and divinylbenzene (DVB) as cross-linker within supercritical carbon dioxide-swollen silicon rubber (SR) has been studied as an approach to preparing semi-interpenetrating polymer network (semi-IPN) of SR and poly(methyl methylacrylate)(PMMA). The SR/PMMA semi-IPNs were characterized by scanning electron microscopy(SEM) and dynamic mechanical analyzer (DMA).     

Reduced multireference coupled-cluster method: barrier heights for heavy atom transfer, nucleophilic substitution, association, and unimolecular reactions

The recently developed reduced multireference coupled-cluster method with singles and doubles (RMR CCSD) that is perturtatively corrected for triples [RMR CCSD(T)] is employed to compute the forward and reverse barrier heights for 19 non-hydrogen-transfer reactions. The method represents an extension of the conventional single-reference (SR) CCSD(T) method to multireference situations. The results are compared with a benchmark database, which is essentially based on the SR CCSD(T) results. With the exception of seven cases, the RMR CCSD(T) results are almost identical with those based on SR CCSD(T), implying the abatement of MR effects at the SD(T) level relative to the SD level. Using the differences between the RMR CCSD(T) and CCSD(T) barrier heights as a measure of MR effects, modified values for barrier heights of studied reactions are given.     

Luminescent Organic-Inorganic Hybrid Metal Halides: An Emerging Class of Stimuli-Responsive Materials

Luminescent organic-inorganic metal halides (OIMHs) are well known as a new materials family in recent years. Novel materials and applications of luminescent OIMHs have been explored by changing either the organic component or the metal halide species. Thereinto, the stimuli-responsive (SR) phenomena in OIMHs have drawn much attention recently, for not only their attractive application potential but also the helpfulness in understanding the stability of OIMHs to the external environment. Herein, the luminescent OIMHs that are sensitive to external stimuli including contact, pressure, mechanical grinding, light, heat, and gas molecules, are reviewed, with an emphasis on analyses of the structural change during the SR process. The applications of SR luminescent OIMHs in widespread fields, including gas sensing, information encryption, and rewritable luminescent paper are summarized. Finally, the challenges that deserve to be further explored in this research field are discussed, which provides certain guidance for the future study of SR luminescent OIMHs.     

Structural prediction of thiolate-protected Au38: a face-fused bi-icosahedral Au core

The lowest-energy structure of thiolate-group-protected Au38(SR)24 is with ab initio computations. A unique bi-isocahedral Au23 core is predicted for the Au38(SR)24 cluster, consistent with recent experimental and theoretical confirmation of the icosahedral Au13 core for the [Au25(SR)18]- cluster. The computed optical absorption spectrum and X-ray diffraction pattern are in good agreement with experimental measurements. Like the "magic-number" cluster [Au25(SR)18]-, the high stability and selectivity of the magic-number Au38(SR)24 cluster is attributed to high structural compatibility between the bi-isocahedral Au23 core and the 18 exterior staple motifs.     

Microdialysis sampling with on-line microbore HPLC for the determination of tirapazamine and its reduced metabolites in rats

An on-line microdialysis microbore HPLC method is described for the determination of the bioreductive anti-tumor agent, tirapazamine (3-amino-1,2,4-benzotriazine-1,4-di-N-oxide, SR4233, WIN59075, Tirazone, TPZ) and its two major reduced metabolites, 3-amino-1,2,4-benzotriazine-1-N-oxide (SR4317) and 3-amino-1,2,4-benzotriazine (SR4330). Detection limits of 0.003 microM, 0.005 microM and 0.007 microM were obtained for tirapazamine, SR4317 and SR4330, respectively. Linear ranges of 0.011-20 microM, 0.017-20 microM and 0.025-20 microM for tirapazamine, SR4317 and SR4330 permitted quantitative analysis of all three compounds in microdialysis samples. Typical intra-day reproducibilities (n = 7) of 4.1% (tirapazamine), 6.6% (SR4317), 9.9% (SR4317), and 1.8% (tirapazamine), 2.4% (SR4317) and 2.6% (SR4330) were obtained at the 0.12 microM and 1.2 microM levels, respectively. Inter-day reproducibilities (n = 5) of 3.4% (tirapazamine), 1.8% (SR4317), 4.5% (SR4330) and 2.5% (tirapazamine), 2.5% (SR4317) and 1.7% (SR4330) were obtained at the 0.12 microM and 1.2 microM levels, respectively. The use of an on-line microdialysis HPLC system, permitted the determination of tirapazamine, SR4317 and SR4330 in blood and muscle tissue of rats with a high temporal resolution of sampling. The pharmacokinetics of tirapazamine and its metabolites were studied in the muscle and blood of rats previously administered an intraperitoneal dose of tirapazamine.     

Effect of acid-treated multi-walled carbon nanotubes on thermo-oxidative stability and degradation behavior of silicone rubber

The effect of acid-treated multi-walled carbon nanotubes (MWCNTs) on thermo-oxidative stability and degradation behavior of silicone rubber (SR) was evaluated. Raman microscopy, Fourier transformed infrared spectroscopy, X-ray photoelectron spectroscopy and thermogravimetric (TG) analysis were performed to characterize the surface states of MWCNTs samples. The results demonstrated that after acid treatment the nanodefects and surface oxygen-containing groups (mainly hydroxyl and carboxyl groups) were formed and the number of them was gradually increased by increasing the treatment time. Then these MWCNTs were embedded into SR matrix. Furthermore, the thermo-oxidative stability and degradation behavior of MWCNTs/SR composites were studied using thermogravimetric/infrared spectrometry (TG-IR). Thermo-oxidative stability test in air revealed that the degradation of SR, at relatively low temperature, was mainly due to the oxidation of Si-CH₃ side groups and the generation of free radicals. This behavior was hindered by the MWCNTs’ surface nanodefects and hydroxyl groups, as proved by TG-IR study which revealed that the amount of carbonyl compounds was reduced more than 60%, compared with that of neat SR. Therefore, acid treatment led a better thermo-oxidative stability of MWCNTs/SR. For 4hAT-MWCNTs/SR, with maximum hydroxyl groups on MWCNTs surface, the T_i (defined as the temperature for 5% mass loss) of it is increased by 34.8 °C compared to that of neat SR, and even increased by 18.5 °C compared with that of raw-MWCNTs/SR.     

The Significance of the Secondary Reactions Regularity for the Chemistry of Condensed Metal Phosphates

Abstract

One of the fundamental methods for the synthesis of condensed phosphates (CP) is their isolation from the aqueous systems containing condensed metal phosphates and polyvalent cations by the method of residual concentrations. The CP regularity was found to show the behaviour in aqueous solutions, conventionally called the secondary reactions. The secondary transformations (ST) or secondary reactions (SR) are expressed in self-deposition of stable crystalline phases through metastable (primary) compounds after a definite induction period from the aqueous systems containing AMCP (ammonium, thallium) and multicharged cations. Various types of secondary reactions, their mechanism, causal relationship, and significance have been investigated. They are typical for simple and complex CP compounds with the chain as well as the cyclic structure of the phosphate ligands containing 2,3,4 phosphorous atom despite the polyvalent cation nature. More than 400 compounds have been obtained by means of the rational methods based on SR. SR contribute significantly to the complexation theory. SR of complex compounds are in their character contrary to the complexation reactions of the known inorganic salt systems. This opposition is realized by isolation of these complex compounds in the form of little-soluble salts. They are the products of a stepwise complex dissociation or of the primary complexation compounds. The isolated compounds are of great purity.     

On the correlation between surface roughness and work function in copper

Both surface roughness (SR) and work function (WF) are important characteristics of a solid surface. Understanding the relationship between SR and WF is necessary in order to apply the Kelvin probe technique to characterize surface behavior. In this study, SR and WF of copper surfaces were measured using atomic force microscopy and scanning Kelvin probe, respectively. Experimental results showed that WF decreased with increase of SR. Using sine functions, a capacitor model was proposed and a correlation between WF and SR was established. The theoretical predictions of WF were in good agreement with experimental results. The model is also useful for analyzing the effect of tip geometry on measurements of WF.     

On the structure of the Au18(SR)14 cluster

First principles calculations are used for a systematic search of the lowest-energy (most-stable) structure of the recently synthesized Au(18)(SR)(14) cluster. A comparison of the calculated optical absorption and electronic circular dichroism spectra, which are highly sensitive to the cluster structure and chirality, with the experimental spectra of the glutathione-protected gold cluster, Au(18)(SG)(14), is used to discriminate between low-energy isomers of the Au(18)(SR)(14) (R = CH(3)) cluster. From the good agreement between calculated and measured spectra, it is predicted that the structure of the Au(18)(SR)(14) cluster consists of a prolate Au(8) core covered with two dimer (SR-Au-SR-Au-SR) and two trimer (SR-Au-SR-Au-SR-Au-SR) motifs. These results provide additional evidence on the existence of longer trimer motifs as protecting units of small thiolated gold clusters.     

Epoxy-POSS/silicone rubber nanocomposites with excellent thermal stability and radiation resistance

Due to the rigid Si-O-Si backbone, silicone rubber (SR) have a widespread application in extreme environment such as high temperature and high-level radiation. However, the radiation stability of SR still does not meet the practical needs in special radiation environments. Herein we prepared epoxy POSS(ePOSS)/SR nanocomposites with excellent thermal stability and radiation resistance. As a physical crosslinking point in the SR, addition of small amount of ePOSS not only enhanced the mechanical properties of the matrix, but also improved its thermal stability greatly due to their good compatibility. ePOSS/SR had higher radiation stability in air than SR owing to the inhibition of radiation oxidation by ePOSS, and the yield of main gaseous radiolysis products (CH₄, H₂, CO and CO₂) of SR and ePOSS/SR nanocomposites was determined. By analyzing the changes of chemical structure, thermal properties and mechanical properties of the ePOSS/SR nanocomposite, combined with the characteristics of gas products after γ-irradiation, the radiation induced crosslinking and degradation mechanism of the nanocomposites was proposed comprehensively.     

Mononitrosyl tris(thiolate) iron complex [Fe(NO)(SPh)3]- and dinitrosyl iron complex [(EtS)2Fe(NO)2]-: formation pathway of dinitrosyl iron complexes (DNICs) from nitrosylation of biomimetic rubredoxin [Fe(SR)4]2-/1- (R = Ph, Et)

Nitrosylation of the biomimetic reduced- and oxidized-form rubredoxin [Fe(SR)4]2-/1- (R = Ph, Et) in a 1:1 stoichiometry led to the formation of the extremely air- and light-sensitive mononitrosyl tris(thiolate) iron complexes (MNICs) [Fe(NO)(SR)3]- along with byproducts [SR]- or (RS)2. Transformation of [Fe(NO)(SR)3]- into dinitrosyl iron complexes (DNICs) [(RS)2Fe(NO)2]- and Roussin's red ester [Fe2(mu-SR)2(NO)4] occurs rapidly under addition of 1 equiv of NO(g) and [NO]+, respectively. Obviously, the mononitrosyl tris(thiolate) complex [Fe(NO)(SR)3]- acts as an intermediate when the biomimetic oxidized- and reduced-form rubredoxin [Fe(SR)4]2-/1- exposed to NO(g) were modified to form dinitrosyl iron complexes [(RS)2Fe(NO)2]-. Presumably, NO binding to the electron-deficient [Fe(III)(SR)4]- and [Fe(III)(NO)(SR)3]- complexes triggers reductive elimination of dialkyl/diphenyl disulfide, while binding of NO radical to the reduced-form [Fe(II)(SR)4]2- induces the thiolate-ligand elimination. Protonation of [Fe(NO)(SEt)3]- yielding [Fe(NO)(SPh)3]- by adding 3 equiv of thiophenol and transformation of [Fe(NO)(SPh)3]- to [Fe(NO)(SEt)3]- in the presence of 3 equiv of [SEt]-, respectively, demonstrated that complexes [Fe(NO)(SPh)3]- and [Fe(NO)(SEt)3]- are chemically interconvertible. Mononitrosyl tris(thiolate) iron complex [Fe(NO)(SPh)3]- and dinitrosyl iron complex [(EtS)2Fe(NO)2]- were isolated and characterized by X-ray diffraction. The mean NO bond distances of 1.181(7) A (or 1.191(7) A) in complex [(EtS)2Fe(NO)2]- are nearly at the upper end of the 1.178(3)-1.160(6) A for the anionic {Fe(NO)2}9 DNICs, while the mean FeN(O) distances of 1.674(6) A (or 1.679(6) A) exactly fall in the range of 1.695(3)-1.661(4) A for the anionic {Fe(NO)2}9 DNICs.     

Introduction of O-butyrylchitosan with a photosensitive hetero-bifunctional crosslinking reagent to silicone rubber film by radiation grafting and its blood compatibility

Based on an in vitro test for an improvement of the blood compatibility of silicone rubber (SR) films by grafting O-butyrylchitosan (OBCS), OBCS was covalently immobilized onto SR film surface using the photosensitive hetero-bifunctional crosslinking reagent, 4-azidobenzoic acid, which was previously bonded to OBCS by reaction between an acid group of the crosslinking reagent and a free amino group of OBCS. Surface properties of SR film were investigated by attenuated total reflection Fourier transform infrared spectroscopy (ATR-FTIR), electron spectroscopy for chemical analysis (ESCA) and the water contact angle measurements. The blood compatibility of SR film was evaluated by platelet rich plasma (PRP) contacting experiments and the results were observed by scanning electron microscopy (SEM). The state of platelet adhesion was described. The suitable modifications could be carried out to tailor SR films biomaterial to meet the specific needs of different biomedical applications. These results suggest that the blood compatible of SR films/OBCS films show their suitability as potential biomaterials.     

Synchrotron and neutron techniques in biological crystallography

Synchrotron radiation (SR) techniques are continuously pushing the frontiers of wavelength range usage, smaller crystal sample size, larger protein molecular weight and complexity, as well as better diffraction resolution. The new research specialism of probing functional states directly in crystals, via time-resolved Laue and freeze trapping structural studies, has been developed, with a range of examples, based on research stretching over some 20 years. Overall, SR X-ray biological crystallography is complemented by neutron protein crystallographic studies aimed at cases where much more complete hydrogen details are needed involving synergistic developments between SR and neutron Laue methods. A big new potential exists in harnessing genome databases for targeting of new proteins for structural study. Structural examples in this tutorial review illustrate new chemistry learnt from biological macromolecules.