New insights into bromination process: effective preparation of Ambroxol

Ambroxol used as an expectorant in treating respiratory diseases was effectively prepared with a total yield of 62%, with o-toluidine as the feedstock via successive procedures of electrophilic bromination, acetylation, radical benzylic bromination, N-alkylation and hydrolysis processes. The addition of aqueous hydrogen peroxide could enhance the utilisation of liquid bromine in the electrophilic bromination of o-toluidine, avoiding the hazardous HBr generated as a by-product. In addition, liquid bromine promoted by MnO₂ was used efficiently for the radical benzylic bromination of N-acetyl-N-(2,4-dibromo-6-methylphenyl)acetamide under mild conditions.     

New insights into the reaction of zinc alkyls with dioxygen

Studies on the reaction of zinc alkyls with O2 are reported which demonstrate that the selective oxygenation of organozinc compound is viable. The reaction of [EtZn(azol)]n (azol = deprotonated 1-aziridineethanol) with an excess of dry O2 in toluene affords the zinc ethylperoxide [EtOOZn(azol)]2[EtZn(azol)]2, while the analogous reaction between Me2Zn and O2 results in the isolation of the Me6Zn7(OMe)8 cluster in high yield.     

New insights into the reaction mechanisms of phenylium ions with benzene

The chemistry of phenylium (benzen-1-ylium) cations with benzene is investigated by using a guided ion beam tandem mass spectrometer. The main ionic products from the reaction of C6H5+ with C6H6 are observed at m/z 155 (covalent adduct C12H11+), 154 (C12H10+), 153 (C12H9+), 129 (C10H9+), and 115 (C9H7+). We propose a mechanism according to which channels at m/z 154-115 are formed by elimination of stable neutral molecules (such as H2, C2H2, C3H4) from the collision complex C12H11+, for which the most plausible structure is protonated biphenyl. The proposed mechanism is demonstrated by using partial isotopical labeling of reagents to look for possible H/D atom scrambling. Almost the same ions are produced when benzene is chemically ionized at atmospheric pressure in an APCI source from which oxygen is excluded. Because an ion trap analyzer is coupled to this source, tandem MS experiments can be performed, allowing structural details to be established. Moreover, the use of partially deuterated reagents has allowed the detection of minor reactive channels resulting from charge exchange and H-/D- hydride-transfer processes. Theoretical calculations show that the most stable structure for ions at m/z 129 C10H9+ is that of protonated naphthalene, resulting from the loss of an acetylene molecule by the condensation product, with a reaction exothermicity of 1.27 eV. We have found a possible barrierless pathway for such a channel that might be viable for the synthesis of naphthalene, the smallest PAH, even at low collision energies and therefore would be of particular astrochemical relevance.     

New insights into the Belousov-Zhabotinskii reaction derived from EQCM measurements at a gold electrode

Electrochemical quartz crystal microbalance experiments were used to study the classical Belousov-Zhabotinskii (BZ) homogeneous oscillating system. This system involves 2 × 10(-3) M Ce(III), 0.28 M malonic acid and 0.063 M bromate as the main initial components in 1 M sulfuric acid solution. The gold-evaporated electrodes on a 10 MHz AT-cut quartz crystal were used for potentiometric and amperometric studies while the changes in crystal frequency provided mass data. Under open-circuit conditions, during the BZ reaction, oscillations of the gold electrode potential in the range ca. 0.8 to 1.07 V (SCE) with a period about 80 s occurred. They were accompanied by periodic 10-15 ng [i.e. ca. 45-70 ng cm(-2)] changes in the electrode mass. At more positive potentials a decrease in electrode mass occurred, while the mass increased at more negative potentials. At a constant applied electrode potential, corresponding to either the upper or the lower potential limit attained under open-circuit conditions, periodic pulses of cathodic current occurred and were accompanied by mass changes. A continuous decrease in the electrode mass occurred at 1.06 V. A detailed examination of the gold electrode behavior in the solutions containing individual components of the system using cyclic voltammetry and quartz crystal microgravimetry provided the information needed to interpret the mass changes that occur in the complete system. No significant changes in the electrode mass occurred in sulfuric acid solution in the potential range where current and mass oscillations take place in the full BZ reaction solution. The same result was found in sulfuric acid solutions containing either Ce(III) or malonic acid. Dissolution of gold occurred in a sulfuric acid solution containing bromate or bromide ions. Adsorption of bromide ions on gold electrode occurred in Br(-)-containing sulfuric acid solution at more negative potentials. In the BZ system, dissolution of gold in the presence of oxidizing (bromate) and complexing (bromide) species causes the decrease in the electrode mass that accompanies the positive potential jump under open-circuit conditions, or the current pulse that occurs at more negative applied constant potentials. Cathodic current pulses occurring at a constant electrode potential (either 0.8 or 1.06 V) are associated with the reduction of Ce(IV) formed as a result of periodic homogeneous oxidation of Ce(III) by bromate. Bromide ions formed in the course of the BZ reaction appear to play a significant role in electrode mass changes, causing a mass decrease at more positive potentials due to dissolution of gold, and a subsequent mass increase at more negative potentials due to adsorption processes.     

Insight into detailed mechanism of the atmospheric reaction of imidogen with hydroxyl: a computational study

The details of reaction mechanism of imidogen (NH) and hydroxyl radicals are explored at the UMP2(FC)/cc–pVDZ and PMP4(FC,SDTQ)/cc–pVQZ//UMP2 + ZPE levels, theoretically. The initial association between NH and OH radicals leads to the formation of the intermediates, NH…OH, HN…HO, cis HNOH, and trans HNOH, through the barrierless and exothermic processes. By starting from the initial intermediates, all possible paths for the formation of H + HNO, H₂ + NO, H₂O + ⁴N, H₂N + ³O, and H + ³HON products are investigated on potential energy surface. The results reveal that H₂O + ⁴N is the main product involved in the mechanism of hydrogen atom abstraction of NH by OH radical through the intermediate NH…OH.     

Mechanistic study of the deamination reaction of guanine: a computational study

The mechanism for the deamination of guanine with H(2)O, OH(-), H(2)O/OH(-) and for GuaH(+) with H(2)O has been investigated using ab initio calculations. Optimized geometries of the reactants, transition states, intermediates, and products were determined at RHF/6-31G(d), MP2/6-31G(d), B3LYP/6-31G(d), and B3LYP/6-31+G(d) levels of theory. Energies were also determined at G3MP2, G3MP2B3, G4MP2, and CBS-QB3 levels of theory. Intrinsic reaction coordinate (IRC) calculations were performed to characterize the transition states on the potential energy surface. Thermodynamic properties (ΔE, ΔH, and ΔG), activation energies, enthalpies, and Gibbs free energies of activation were also calculated for each reaction investigated. All pathways yield an initial tetrahedral intermediate and an intermediate in the last step that dissociates to products via a 1,3-proton shift. At the G3MP2 level of theory, deamination with OH(-) was found to have an activation energy barrier of 155 kJ mol(-1) compared to 187 kJ mol(-1) for the reaction with H(2)O and 243 kJ mol(-1) for GuaH(+) with H(2)O. The lowest overall activation energy, 144 kJ mol(-1) at the G3MP2 level, was obtained for the deamination of guanine with H(2)O/OH(-). Due to a lack of experimental results for guanine deamination, a comparison is made with those of cytosine, whose deamination reaction parallels that of guanine.     

New insights into the polymerization of methyl methacrylate initiated by rare-earth borohydride complexes: a combined experimental and computational approach

Polymerization of methyl methacrylate (MMA) initiated by the rare-earth borohydride complexes [Ln(BH(4))(3)(thf)(3)] (Ln=Nd, Sm) or [Sm(BH(4))(Cp*)(2)(thf)] (Cp*=eta-C(5)Me(5)) proceeds at ambient temperature to give rather syndiotactic poly(methyl methacrylate) (PMMA) with molar masses M(n) higher than expected and quite broad molar mass distributions, which is consistent with a poor initiation efficiency. The polymerization of MMA was investigated by performing density functional theory (DFT) calculations on an eta-C(5)H(5) model metallocene and showed that in the reaction of [Eu(BH(4))(Cp)(2)] with MMA the borate [Eu(Cp)(2){(OBH(3))(OMe)C=C(Me)(2)}] (e-2) complex, which forms via the enolate [Eu(Cp)(2){O(OMe)C=C(Me)(2)}] (e), is calculated to be exergonic and is the most likely of all of the possible products. This product is favored because the reaction that leads to the formation of carboxylate [Eu(Cp)(2){OOC-C(Me)(=CH(2))}] (f) is thermodynamically favorable, but kinetically disfavored, and both of the potential products from a Markovnikov [Eu(Cp)(2){O(OMe)C-CH(Me)(CH(2)BH(3))}] (g) or anti-Markovnikov [Eu(Cp)(2){O(OMe)C-C(Me(2))(BH(3))}] (h) hydroboration reaction are also kinetically inaccessible. Similar computational results were obtained for the reaction of [Eu(BH(4))(3)] and MMA with all of the products showing extra stabilization. The DFT calculations performed by using [Eu(Cp)(2)(H)] to model the mechanism previously reported for the polymerization of MMA initiated by [Sm(Cp*)(2)(H)](2) confirmed the favorable exergonic formation of the intermediate [Eu(Cp)(2){O(OMe)C=C(Me)(2)}] (e') as the kinetic product, this enolate species ultimately leads to the formation of PMMA as experimentally observed. Replacing H by BH(4) thus prevents the 1,4-addition of the [Eu(BH(4))(Cp)(2)] borohydride ligand to the first incoming MMA molecule and instead favors the formation of the borate complex e-2. This intermediate is the somewhat active species in the polymerization of MMA initiated by the borohydride precursors [Ln(BH(4))(3)(thf)(3)] or [Sm(BH(4))(Cp*)(2)(thf)].     

New reaction in the acridine series

A new reaction in the acridine series — reaction of its salt or the base with the salts or bases of N-heterocyclic compounds containing an active methyl group in the presence of sulfur — was investigated. It is shown that 9-acridinylheterylmethanes are formed as a result of this reaction.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 10, pp. 1384–1386, October, 1970.     

New insights into urea action on proteins: a SANS study of the lysozyme case

We present a study on lysozyme dissolved in mixtures of water and urea, which is ubiquitously used as a protein denaturant. Despite the wide use of urea, the basic molecular mechanisms inducing protein unfolding are not still clarified. Small-angle neutron scattering (SANS) experiments have been performed using little amounts of denaturant in solutions in order to investigate the urea effect on lysozyme preceding the unfolding process. A global fit strategy, applied to analyze SANS experiments, provides an estimation of the average composition of the solvent in the close vicinity of the protein surface and the change of the protein-protein interactions due to the presence of urea. In particular, the thermodynamic equilibrium constant responsible for cosolvent balancing between the bulk and solvation layer has been determined. It turns out that urea is preferentially driven to the protein surface, confirming literature results at infinite dilute conditions. SANS data also reveal a possible variation of the protein net charge as a function of urea concentration, opening new perspectives and questions about the protein surface architecture at the first stages of unfolding processes.     

Reactivity and selectivity in the Wittig reaction: a computational study

The salt-free Wittig reaction of non-, semi-, and stabilized ylides has been investigated on realistic systems using density functional theory (DFT) calculations, including continuum solvation. Our results provide unequivocal support for the generally accepted mechanism and are in very good agreement with experimental selectivities. This study shows that E/Z selectivity of non- and semi-stabilized ylides cannot be fully understood without considering the energy of the elimination TS. The influence of ylide stabilization and the nature of phosphorus substituents on reversibility of oxaphosphetane formation is clarified. Unexpectedly, the puckering ability of addition TSs is shown not to depend on ylide stabilization, but the geometry of the TS is decided by an interplay of 1,2; 1,3; and C-H...O interactions in the case of non- and semi-stabilized ylides, whereas a dipole-dipole interaction governs the addition TS structures for stabilized ylides. The well-known influence of ylide stabilization on selectivity of PPh(3) derivatives is explained as follows: in non- and semi-stabilized ylides reactions, cis and trans addition TSs have, respectively, puckered and planar geometries, and selectivity is governed by an interplay of 1,2 and 1,3 interactions. For stabilized ylides, the high E selectivity is due to a strong dipole-dipole interaction at the addition TS. The influence of the nature of phosphorus substituents on selectivity is also detailed, the different behavior of (MeO)(3)PCHCO(2)Me ylides being explained by their lower dipole. This novel picture of the factors determining TS structures and selectivity provides a sound basis for the design of new ylides.     

New mechanistic insights into the iridium-phosphanooxazoline-catalyzed hydrogenation of unfunctionalized olefins: a DFT and kinetic study

The reaction mechanism of the iridium-phosphanooxazoline-catalyzed hydrogenation of unfunctionalized olefins has been studied by means of density functional theory calculations (B3LYP) and kinetic experiments. The calculations suggest that the reaction involves an unexpected Ir(III)-Ir(V) catalytic cycle facilitated by coordination of a second equivalent of dihydrogen. Thus, in the rate-determining migratory insertion of the substrate alkene into an iridium-hydride bond, simultaneous oxidative addition of the bound dihydrogen occurs. The kinetic data shows that the reaction is first order with respect to hydrogen pressure. This is interpreted in terms of an endergonic coordination of this second equivalent of dihydrogen, although a rate-determining step, in which coordinated solvent is replaced by dihydrogen, could not be ruled out. Furthermore, the reaction was found to be zeroth order with respect to the alkene concentration. This correlates well with the calculated exothermicity of substrate coordination, and the catalyst is thus believed to coordinate an alkene in the resting state. On the basis of the proposed catalytic cycle, calculations were performed on a full-sized system with 88 atoms to assess the appropriateness of the model calculations. These calculations were also used to explain the enantioselectivity exerted by the catalyst.     

New insights into pseudo-second-order kinetic equation for adsorption

This study looked into the theoretical basis of the most commonly used pseudo-second-order kinetic equation for adsorption. It was demonstrated that the pseudo-second-order kinetic equation for adsorption indeed is in line with the universal rate law for a chemical reaction, while the same principle can also be applied to the pseudo-first-order kinetic equation for adsorption. This in turn offers a theoretical basis for the pseudo-second-order equation. If the second-order equation is applicable, the rate of adsorption was found to be subject to a second-order rate law with respect to the availability of adsorption sites on the surface of adsorbent rather than adsorbate concentration in bulk solution as proposed in the literature. Based on the rate law for the second-order adsorption process, the original complex second-order kinetic equation can be transformed to a simple hyperbolic form with clearly defined mathematical structure: Q_t = Q_e(t/t + t_r) in which t_r is relaxation time representing time required for adsorption to reach half-saturation state of adsorbent under given experimental conditions, i.e., Q_t = 0.5Q_e.     

New insights into the multiple minima problem

Minima distribution of thorough conformational searches of three peptides of different length ranging from five to nine residues, were compared with the density of states of a flexible molecule derived from the rotational isomeric approximation. It is observed that minima distributions generated from the conformational searches exhibit the same characteristics as the density of states derived from the rotational isomeric model: an asymmetric distribution with a maximum. These results together with a more profound understanding of the characteristics of the energy landscapes of polypeptides, provide new insights into the multiple minima problem. The implications in devising more robust conformational search strategies are discussed.     

Mechanistic insights into the stepwise Diels-Alder reaction of 4,6-dinitrobenzofuroxan

The stepwise Diels-Alder reaction between 1-trimethylsiloxy-1,3-butadiene and 4,6-dinitrobenzofuroxan is explored using state-of-the-art computational methods. The results support a stepwise mechanism via a persistent intermediate, however, not the one previously reported (Lakhdar et al., Chem. Eur. J.2007, 16, 5681) but a heterocyclic adduct. The novel DFT functional M062X and the SCS-MP2 method were essential to reproduce a reasonable potential energy surface for this challenging system.     

New insights into the solubilization of Bodipy dyes

Several Bodipy dyes were synthesized with various substituents designed to improve the water solubility. Among the different synthetic strategies protection of sulfonate groups by pyrrole of indopyrrole appears efficient but the deprotection step does not offer viable routes. Conversion of the bromopyrene or iodo Bodipy compounds to sulfobetaine derivatives is feasible either by cross-coupling directly the ethynylsulfobetaine or by first cross-coupling 1-(N,N-dimethylamino)-prop-2-yne followed by quaternization of the dimethylamino residue with 1,3-propanesultone. Some of these dyes (Bodipy’s and pyrene) are reasonably soluble in water and remain highly fluorescent in polar solvents and water.     

New insights into the structure of polyelectrolyte complexes

The formation of polyelectrolyte complexes (PECs) from oppositely charged linear polyelectrolytes (PELs) was studied using static light scattering at various salt concentrations. The PELs used were poly(allylamine hydro chloride) (PAH) and the two polyanions poly(acrylic acid) (PAA) and poly(methacrylic acid) (PMAA). Physical characteristics such as the radii of gyration, molecular weights, and water contents of the PECs were determined at various molar mixing ratios. Despite relatively small differences in chemical structure between PAA and PMAA, fairly large differences were detected in these physical characteristics. Generally, PECs comprising PMAA were larger and contained more water. Moreover, by using cryogenic transmission electron microscopy, transmission microscopy and atomic force microscopy, shape and structure of the prepared PECs were investigated both in solution and after drying. The PECs were found to be spherical in solution and the shape was retained after freeze-drying. PECs adsorbed on silica surfaces and dried in air at room-temperature still showed a three-dimensional structure. However, the relatively low aspect ratios indicated that the PECs collapsed significantly due to interactions with the silica during adsorption and drying. At intermediate ionic strengths (1-10 mM), stagnation point adsorption reflectometry (SPAR) showed that the adsorption of low charged cationic PAH-PAA PECs on silica surfaces increased if the pH value was increased from pH 5.5 to 7.5.     

New insights into an old reaction. High-resolution x-ray powder diffraction of Wiberg's aminoalane intermediate

In accordance with the procedure described by E. Wiberg, Me(3)Al-NH(3) was heated as a bulk material in inert atmosphere to give a colorless liquid which slowly loses methane. Close to the end of this elimination reaction, the melt crystallized to give a microcrystalline powder of (Me(2)AlNH(2))(x)(). The structure of this intermediate has been solved by the method of high-resolution X-ray powder diffraction. The compound crystallizes in the monoclinic space group C2/c with the cell parameters of a = 15.0047(6) A, b = 8.7500(2) A, c = 24.4702(8) A, and beta = 107.290(2) degrees, with eight trimers (Me(2)AlNH(2))(3) per unit cell. These trimers crystallize in a boat conformation in contrast to the known trimers of the same composition where a twist-boat conformation had been found by single crystal determination. Different conformers of (Me(2)AlNH(2))(3) have been investigated by theoretical methods (HF/6-31G(d), B3LYP/6-31G(d), B3LYP/6-311G(d,p), MP2(fc)/6-31G(d), and MP2(fc)/6-311G(d,p)). The twist-boat and the chair conformer correspond to minima at the potential energy surface, whereas the boat conformer corresponds to a first-order transition state (relative energies of 0.45-2.56 kJ/mol (boat) and 6.66-11.91 kJ/mol (chair)). Relaxed scans of the potential energy surface at the HF/6-31G(d) and B3LYP/6-31G(d) levels have shown that the boat conformer (C(s)() symmetry) connects two enantiomers of the twist-boat form (C(2) symmetry).     

New insights into Hansen's solubility parameters

Correlations among the three components, δ_d² (dispersion), δ_h² (hydrogen‐bonding), and δ_p² (polar) that make up the Hansen solubility parameter equation, δ_o² = δ_d² + δ_h² + δ_p², have been analyzed for a large number of organic solvents. A relationship is found that enables δ_h and δ_p to be estimated if δ_o and δ_d are known. This relationship is applied to a variety of common polymers and remarkably good agreement is obtained with tabulated values for δ_h and δ_p. Additional correlations are found that can be expressed in approximate functional form. The analysis also reveals relationships, expressed as inequalities, among the parameters that limit their range of possible values. © 2004 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 42: 4337–4343, 2004