[DBU‐H]+ and H2o as effective catalyst form for 2,3‐dihydropyrido[2,3‐d]pyrimidin‐4(1H)‐ones: A DFT Study

DFT investigations are carried out to explore the effective catalyst forms of DBU and H₂O and the mechanism for the formation of 2,3‐dihydropyrido[2,3‐d]‐pyrimidin‐4(1H)‐ones. Three main pathways are disclosed under unassisted, water‐catalyzed, DBU and water cocatalyzed conditions, which involves concerted nucleophilic addition and H‐transfer, concerted intramolecular cyclization and H‐transfer, and Dimroth rearrangement to form the product. The results indicated that the DBU and water cocatalyzed pathway is the most favored one as compared to the rest two pathways. The water donates one H to DBU and accepts H from 2‐amino‐nicotinonitrile ( 1 ), forming [DBU‐H]⁺‐H₂O as effective catalyst form in the proton migration transition state rather than [DBU‐H]⁺‐OH^?. The hydrogen bond between [DBU‐H]⁺···H₂O··· 1 ^? decreases the activation barrier of the rate‐determining step. Our calculated results open a new insight for the green catalyst model of DBU‐H₂O. © 2015 Wiley Periodicals, Inc.     

Mechanisms in the Reaction of Palladium(II)–π‐Allyl Complexes with Aryl Halides: Evidence for NHC Exchange Between Two Palladium Complexes

A detailed experimental and DFT study (PBE level) of the reaction of [Pd(η³‐C₃H₅)(tmiy)(PR₃)]BF₄ (tmiy=tetramethylimidazolin‐2‐ylidene, PR₃=phosphane), precursors to monoligated Pd⁰ species, with aryl electrophiles yielding 2‐arylimidazolium salt is reported. Experiments establish that an autocatalytic ligand transfer mechanism is preferred over Pd^IV and σ‐bond metathesis pathways, and that transmetalation is the rate‐determining step. Calculations indicate that the key step involves the concerted exchange of NHC and iodo ligands between two different Pd^II complexes. This is corroborated by experimental results showing the slower reaction of complexes containing the bulkier dipdmiy (dipdmiy = diisopropyldimethylimidazolin‐2‐ylidene).     

Distance Dependence of Bidirectional Concerted Proton–Electron Transfer in Phenol‐Ru(2,2′‐bipyridine)32+ Dyads

Proton‐coupled electron transfer (PCET) was investigated in three covalent donor–bridge–acceptor molecules with different bridge lengths. Upon photoexcitation of their Ru(bpy)₃²⁺ (bpy=2,2′‐bipyridine) photosensitizer in acetonitrile, intramolecular long‐range electron transfer from a phenolic unit to Ru(bpy)₃²⁺ occurs in concert with release of the phenolic proton to pyrrolidine base. The kinetics of this bidirectional concerted proton–electron transfer (CPET) reaction were studied as a function of phenol–Ru(bpy)₃²⁺ distance by increasing the number of bridging p‐xylene units. A distance decay constant (β) of 0.67±0.23 Å^?1 was determined. The distance dependence of the rates for CPET is thus not significantly steeper than that for ordinary (i.e., not proton coupled) electron transfer across the same bridges, despite the concerted motion of oppositely charged particles into different directions. Long‐range bidirectional CPET is an important reaction in many proteins and plays a key role in photosynthesis; our results are relevant in the context of photoinduced separation of protons and electrons as a means of light‐to‐chemical energy conversion. This is the first determination of β for a bidirectional CPET reaction.     

Fragmentations of Hydroxymethyl Radical Cation: An Ab Initio Study

The probable fragmentation channels of hydroxymethyl radical cation were studied through the H‐and H₂‐abstraction and C‐O bond breaking reactions including their related isomerization reactions. The energy barriers for hydroxymethyl cation undergoing isomerization reactions are generally higher than those undergoing the concerted 1,2‐elimination reactions to generate CHO⁺ and H₂. The fragmentation reaction to form CHO⁺ and H₂ through the 1,2‐elimination pathways is the major fragmentation channel for hydroxymethyl cation, consistent with the experimental observation. H abstraction from the hydroxyl group of CH₂OH⁺ is more difficult than that from the methylene group. The feasible path to lose H is to generate CHOH₂⁺ through hydrogen transfer reaction as the first step and then to undergo H‐elimination to generate trans‐CHOH⁺. Among all the reactions found in this study, the OH‐elimination to generate CH₂⁺ has the highest energy barrier. Our calculation results indicate that the major signals contributed from the related species of hydroxymethyl cation found in the mass spectrum should be m/e 29, m/e 30.     

Selective Formation of an FeIVO or an FeIIIOOH Intermediate From Iron(II) and H2O2: Controlled Heterolytic versus Homolytic Oxygen–Oxygen Bond Cleavage by the Second Coordination Sphere

We demonstrate that the devised incorporation of an alkylamine group into the second coordination sphere of an Fe^II complex allows to switch its reactivity with H₂O₂ from the usual formation of Fe^III species towards the selective generation of an Fe^IV‐oxo intermediate. The Fe^IV‐oxo species was characterized by UV/Vis absorption and Mössbauer spectroscopy. Variable‐temperature kinetic analyses point towards a mechanism in which the heterolytic cleavage of the O?O bond is triggered by a proton transfer from the proximal to the distal oxygen atom in the Fe^II‐H₂O₂ complex with the assistance of the pendant amine. DFT studies reveal that this heterolytic cleavage is actually initiated by an homolytic O?O cleavage immediately followed by a proton‐coupled electron transfer (PCET) that leads to the formation of the Fe^IV‐oxo and release of water through a concerted mechanism.     

Density functional theory studies on the external OH−‐induced barrierless proton dissociation mechanism for the forced hydrolysis reaction of Al3+(aq)

The forced hydrolysis reaction of aqueous aluminum ion (Al³⁺) is of critical importance in Al chemistry, but its microscopic mechanism has long been neglected. Herein, density functional calculations reveal an external OH⁻‐induced barrierless proton dissociation mechanism for the forced hydrolysis of Al³⁺(aq). Dynamic reaction pathway modeling results show that the barrierless deprotonations induced by the second‐ or third‐shell external OH⁻ proceed via the concerted proton transfer through H‐bond wires connected to the coordinated waters, and the inducing ability of the external OH⁻ decreases with increasing hydration layers between Al(H₂O)₆³⁺ and the external OH⁻. The OH⁻‐induced forced hydrolysis mechanism of Al³⁺(aq) is quite different from its self‐hydrolysis mechanism without OH⁻. The inducing ability is a unique characteristic of OH⁻, rather than other anions such as F⁻ or Cl⁻.     

A DFT study of proton transfers for the reaction of phenol and hydroxyl radical leading to dihydroxybenzene and H2O in the water cluster

Reactions of phenol and hydroxyl radical were studied under the aqueous environment to investigate the antioxidant characters of phenolic compounds. M06‐2X/6‐311 + G(d,p) calculations were carried out, where proton transfers via water molecules were examined carefully. Stepwise paths from phenol + OH^• + (H₂O)_n (n = 3, 7, and 12) to the phenoxyl radical (Ph O^•) via dihydroxycyclohexadienyl radicals (ipso, ortho, meta, and para OH‐adducts) were obtained. In those paths, the water dimer was computed to participate in the bond interchange along hydrogen bonds. The concerted path corresponding to the hydrogen atom transfer (HAT, apparently Ph OH + OH^• → Ph O^• + H₂O) was found. In the path, the hydroxyl radical located on the ipso carbon undergoes the charge transfer to prompt the proton (not hydrogen) transfer. While the present new mechanism is similar to the sequential proton loss electron transfer (SPLET) one, the former is of the concerted character. Tautomerization reactions of ortho or para (OH)C₆H₅=O + (H₂O)_n → C₆H₄(OH)₂(H₂O)_n were traced with n = 2, 3, 4, and 14. The n = 3 (and n = 14) model of ortho and para was calculated to be most likely by the strain‐less hydrogen‐bond circuit.     

Kinetics and Mechanism of the Reaction of a Ruthenium(VI) Nitrido Complex with HSO3− and SO32− in Aqueous Solution

The kinetics and mechanism of the reaction of S^IV (SO₃^2?+HSO₃^?) with a ruthenium(VI) nitrido complex, [(L)Ru^VI(N)(OH₂)]⁺ (Ru^VIN, L=N,N′‐bis(salicylidene)‐o‐cyclohexyldiamine dianion), in aqueous acidic solutions are reported. The kinetic results are consistent with parallel pathways involving oxidation of HSO₃^? and SO₃^2? by Ru^VIN. A deuterium isotope effect of 4.7 is observed in the HSO₃^? pathway. Based on experimental results and DFT calculations the proposed mechanism involves concerted N?S bond formation (partial N‐atom transfer) between Ru^VIN and HSO₃^? and H⁺ transfer from HSO₃^? to a H₂O molecule.     

Proton transfer at the carboxylic sites of amino acids: A single water molecule catalyzed process

Ab initio calculations at MP2 level of theory were used to study the proton transfer at the carboxylic sites of amino acids, in the isolated, mono‐ and di‐hydrated forms. In the case of water dimer, two interaction modes with glycine neutral structures (see Fig. 3 ) were explored, corresponding to the concerted and stepwise reaction pathways. Their transition states can be described as (H₂O? H? OH₂)⁺ [Fig. 4 (a)] and (H₂O‐‐‐H? OH₂)⁺ [Fig. 4 (b)], respectively. The energy analysis indicated that the concerted pathway is preferred. In the isolated, mono‐ and di‐hydrated glycine complexes, the activation barriers of the proton transfer at the carboxylic sites were calculated to be 34.49, 16.59, and 13.36 kcal mol^?1, respectively. It was thus shown that the proton transfer is significantly assisted and catalyzed by water monomer so that it can take place at room temperature. Instead, the further addition of water molecules plays solvent effects rather than catalytic effects to this proton transfer process. The above results obtained with discrete water molecules were supported by the solvent continuum calculated data. It was also observed that the heavy dependence of the solvent continuum models on dipole moments may produce misleading results. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Elucidation of artefacts in proton transfer reaction time‐of‐flight mass spectrometers

We present an effective procedure to differentiate instrumental artefacts, such as parasitic ions, memory effects, and real trace impurities contained in inert gases. Three different proton transfer reaction mass spectrometers were used in order to identify instrument‐specific parasitic ions. The methodology reveals new nitrogen‐ and metal‐containing ions that up to date have not been reported. The parasitic ion signal was dominated by [N₂]H⁺ and [NH₃]H⁺ rather than by the common ions NO⁺ and O₂⁺. Under dry conditions in a proton transfer reaction quadrupole interface time‐of‐flight mass spectrometer (PTR‐QiTOF), the ion abundances of [N₂]H⁺ were elevated compared with the signals in the presence of humidity. In contrast, the [NH₃]H⁺ ion did not show a clear humidity dependency. On the other hand, two PTR‐TOF1000 instruments showed no significant contribution of the [N₂]H⁺ ion, which supports the idea of [N₂]H⁺ formation in the quadrupole interface of the PTR‐QiTOF. Many new nitrogen‐containing ions were identified, and three different reaction sequences showing a similar reaction mechanism were established. Additionally, several metal‐containing ions, their oxides, and hydroxides were formed in the three PTR instruments. However, their relative ion abundancies were below 0.03% in all cases. Within the series of metal‐containing ions, the highest contribution under dry conditions was assigned to the [Fe(OH)₂]H⁺ ion. Only in one PTR‐TOF1000 the Fe⁺ ion appeared as dominant species compared with the [Fe(OH)₂]H⁺ ion. The present analysis and the resulting database can be used as a tool for the elucidation of artefacts in mass spectra and, especially in cases, where dilution with inert gases play a significant role, preventing misinterpretations.     

Another Unprecedented Wieland Mechanism Confirmed: Hydrogen Formation from Hydrogen Peroxide,Formaldehyde, and Sodium Hydroxide

In 1923, Wieland and Wingler reported that in the molecular hydrogen producing reaction of hydrogen peroxide with formaldehyde in basic solution, free hydrogen atoms (H^.) are not involved. They postulated that bis(hydroxymethyl)peroxide, HOCH₂OOCH₂OH, is the intermediate, which decomposes to yield H₂ and formate, proposing a mechanism that would nowadays be considered as a “concerted process”. Since then, several other (conflicting) “mechanisms” have been suggested. Our NMR and Raman spectroscopic and kinetic studies, particularly the determination of the deuterium kinetic isotope effect (DKIE), now confirm that in this base‐dependent reaction, both H atoms of H₂ derive from the CH₂ hydrogen atoms of formaldehyde, and not from the OH groups of HOCH₂OOCH₂OH or from water. Quantum‐chemical CBS‐QB3 and W1BD computations show that H₂ release proceeds through a concerted process, which is strongly accelerated by double deprotonation of HOCH₂OOCH₂OH, thereby ruling out a free radical pathway.     

Single‐Site Copper(II) Water Oxidation Electrocatalysis: Rate Enhancements with HPO42− as a Proton Acceptor at pH 8

The complex Cu^II(Py₃P) ( 1 ) is an electrocatalyst for water oxidation to dioxygen in H₂PO₄^?/HPO₄^2? buffered aqueous solutions. Controlled potential electrolysis experiments with 1 at pH 8.0 at an applied potential of 1.40 V versus the normal hydrogen electrode resulted in the formation of dioxygen (84 % Faradaic yield) through multiple catalyst turnovers with minimal catalyst deactivation. The results of an electrochemical kinetics study point to a single‐site mechanism for water oxidation catalysis with involvement of phosphate buffer anions either through atom–proton transfer in a rate‐limiting O? O bond‐forming step with HPO₄^2? as the acceptor base or by concerted electron–proton transfer with electron transfer to the electrode and proton transfer to the HPO₄^2? base.     

Some observations on the kinetics and thermochemistry of the reactions of HO2 radicals with aldehydes and ketones

The rapid, gas phase equilibrium addition of HO₂ radicals to CH₂O to form the peroxy radical HOCH₂OO^? is in agreement with the known thermochemistry of these species. The recent study of the similar addition of HO₂^? to ketones shows no significant reaction, which is again in agreement with known thermochemistry. All these reactions are notable for significant dipole attraction between the reactants ranging from 3 to 7 kcal/mol. The thermochemistry shows that the hydroperoxyl alkoxy species, the primary possible adduct, is not favored by the free energy change for direct addition. This and the observed kinetics favor a concerted addition, H‐atom transfer, as the transition state for the reactions. Kinetic estimates for forward and reverse reactions are in good agreement with observations. A thermochemical examination of the step‐wise addition of HO₂^? to the carbonyl shows that the reaction proceeds through a concerted, cyclic transition state involving simultaneous H‐transfer, 3 + 2 cyclo‐addition of HO₂^? to the carbonyl group. © 2001 John Wiley & Sons, Inc. Int J Chem Kinet 33: 509–512, 2001     

A New Approach for the Photosynthetic Antenna–Reaction Center Complex with a Model Organized Around an s‐Triazine Linker

Two new artificial mimics of the photosynthetic antenna‐reaction center complex have been designed and synthesized (BDP‐H₂P‐C₆₀ and BDP‐ZnP‐C₆₀). The resulting electron‐donor/acceptor conjugates contain a porphyrin (either in its free‐base form (H₂P) or as Zn‐metalated complex (ZnP)), a boron dipyrrin (BDP), and a fulleropyrrolidine possessing, as substituent of the pyrrolidine nitrogen, an ethylene glycol chain terminating in an amino group C₆₀‐X‐NH₂ (X=spacer). In both cases, the three different components were connected by s‐triazine through stepwise substitution reactions of cyanuric chloride. In addition to the facile synthesis, the star‐type arrangement of the three photo‐ and redox‐active components around the central s‐triazine unit permits direct interaction between one another, in contrast to reported examples in which the three components are arranged in a linear fashion. The energy‐ and electron‐transfer properties of the resulting electron‐donor/acceptor conjugates were investigated by using UV/Vis absorption and emission spectroscopy, cyclic voltammetry, and femtosecond transient absorption spectroscopy. Comparison of the absorption spectra and cyclic voltammograms of BDP‐H₂P‐C₆₀ and BDP‐ZnP‐C₆₀ with those of BDP‐H₂P, BDP‐ZnP and BDP‐C₆₀, which were used as references, showed that the spectroscopic and electrochemical properties of the individual constituents are basically retained, although some appreciable shifts in terms of absorption indicate some interactions in the ground state. Fluorescence lifetime measurements and transient absorption experiments helped to elucidate the antenna function of BDP, which upon selective excitation undergoes a rapid and efficient energy transfer from BDP to H₂P or ZnP. This is then followed by an electron transfer to C₆₀, yielding the formation of the singlet charge‐separated states, namely BDP‐H₂P ^.+‐ C₆₀ ^.? and BDP‐ZnP ^.+‐ C₆₀ ^{. ?}. As such, the sequence of energy transfer and electron transfer in the present models mimics the events of natural photosynthesis.     

Solvation‐Induced Changes in the Mechanism of Alcohol Oxidation at Gold/Titania Nanocatalysts in the Aqueous Phase versus Gas Phase

Gold/titania catalysts are widely used for key reactions, notably including the selective oxidation of alcohols in the liquid phase. Our large‐scale ab initio simulations disclose that the liquid‐phase reaction mechanism is distinctly different from that in the gas phase because of active participation of water molecules. While concerted charge transfers related to O₂ splitting and abstraction of both protonic and hydridic hydrogens are enforced under dry conditions, stepwise charge transfer is preferred in the condensed phase. Dissociation of reactive water molecules and subsequent Grotthuss migration of protonic defects, H⁺(aq), allows for such a decoupling of the oxidation process, both in time and space. It is expected that these observations are paradigmatic for heterogeneous catalysis in aqueous phases.     

Metal‐Free Oxidative B−N Coupling of nido‐Carborane with N‐Heterocycles

A general method for the oxidative substitution of nido‐carborane (7,8‐C₂B₉H₁₂^?) with N‐heterocycles has been developed by using 2,3‐dichloro‐5,6‐dicyanobenzoquinone (DDQ) as an oxidant. This metal‐free B?N coupling strategy, in both inter‐ and intramolecular fashions, gave rise to a wide array of charge‐compensated, boron‐substituted nido‐carboranes in high yields (up to 97 %) with excellent functional‐group tolerance under mild reaction conditions. The reaction mechanism was investigated by density‐functional theory (DFT) calculations. A successive single‐electron transfer (SET), B?H hydrogen‐atom transfer (HAT), and nucleophilic attack pathway is proposed. This method provides a new approach to nitrogen‐containing carboranes with potential applications in medicine and materials.     

Mechanistic investigation inspired “on water” reaction for hydrobromic acid‐catalyzed Friedel–Crafts–type reaction of β‐naphthol and formaldehyde

The mechanism of the HBr‐catalyzed Friedel‐Crafts‐type reaction between β‐naphthol and HCHO was investigated by DFT to improve this reaction. The HBr‐H₂O co‐catalyzed the preferential pathway undergoes the concerted nucleophilic addition and hydrogen shift, stepwise followed by H₂O elimination and the C C bond formation. The origin of the high catalytic activity of HBr is ascribed to C H···Br⁻ and O H···Br⁻ interactions, which suggest that the active species is Br⁻. Moreover, water molecules efficiently assist in improving the activity of Br⁻. The computational results show that solvent polarity profoundly affects the activation barriers. To our delight, the activation barrier of the rate‐determining step for the favored pathway in water is comparable (0.6 kcal/mol difference) with that in acetonitrile. The experimental observation further confirmed our results and demonstrated that the title reaction can be successfully achieved “on water.” Therefore, we open a new efficient and green strategy for the synthesis of biphenol derivatives. © 2017 Wiley Periodicals, Inc.     

Mercury Methylation by Cobalt Corrinoids: Relativistic Effects Dictate the Reaction Mechanism

The methylation of Hg^II(SCH₃)₂ by corrinoid‐based methyl donors proceeds in a concerted manner through a single transition state by transfer of a methyl radical, in contrast to previously proposed reaction mechanisms. This reaction mechanism is a consequence of relativistic effects that lower the energies of the mercury 6p_1/2 and 6p_3/2 orbitals, making them energetically accessible for chemical bonding. In the absence of spin–orbit coupling, the predicted reaction mechanism is qualitatively different. This is the first example of relativity being decisive for the nature of an observed enzymatic reaction mechanism.     

Tuning Excited‐State Reactivity by Proton‐Coupled Electron Transfer

The reactivity, and even reaction pathway, of excited states can be tuned by proton‐coupled electron transfer (PCET). The triplet state of benzophenone functionalized with a Brønsted acid (³*BP‐COOH) showed a more powerful oxidation capability over the simple triplet state of benzophenone (³*BP). ³*BP‐COOH could remove an electron from benzene at the rate of 8.0×10⁵ m ^?1 s^?1, in contrast to the reactivity of ³*BP which was inactive towards benzene oxidation. The origin of this great enhancement on the ability of the excited states to remove electrons from substrates is attributed to the intramolecular Brønsted acid, which enables the reductive quenching of ³*BP by concerted electron–proton transfer.