Topological characterization of cyclic structures

The sum of the topological distances in the molecular graph (the Wiener number) is used for a topological characterization of the condensed polycyclic molecular systems. This topological index discriminates well the isomeric cyclic molecules. In addition, it also properly reflects their structural features. On this basis the principal points of molecular cyclicity are formulated in 15 rules.     

Topological effects for nonsymmetrical configurations: the C2H+2 as a case study

During the last decade the study of topological effects formed by molecular systems became a routine but it was always carried out for configurations that were limited by symmetry conditions. To be more specific this applied to the Jahn-Teller (JT) effect formed by molecular configurations of planar symmetry [see, e.g., Baer et al., Faraday Discuss. 127, 337 (2004)] and the Renner-Teller effect formed by configurations of axial symmetry [see, e.g., Halasz et al., J. Chem. Phys. 126, 154309 (2007)]. In this article we consider for the first time molecular configurations that avoid any symmetry conditions or, in other words, are characterized by the C(1) point group. We report on a detailed study of topological effects formed by such a molecular system. The study concentrates on both, the two-state (Abelian) case and the multistate (non-Abelian) case. It is shown that the theory that was originally developed to treat topological effects due the JT intersection and also applies for the study of topological effects in the most general case. The study is accompanied with numerical results.     

三梯级和四梯级圆筒和Mbius分子的拓扑特性研究

Walba等以其卓越的工作,合成了三-THYME(C_(42)H_(72)O_(18))和四-THYME(C_(56)H_(96)O_(24))圆筒及其Mbius扭曲环带分子,被誉为拓扑学进入有机化学领域的奇迹,成为迄今为止拓扑立体化学研究的重要内容,但从拓扑学的观点探索分子图拓扑结构特性尚缺乏深入研究,本文作者考虑到一般性,曾将扭曲数T为偶数(0,2,4)的定义为Hckel型,扭曲数     

Predicting Thermodynamic Properties of Alkanes with L and B

Two new molecular topological indices of alkane:the logarithmic topological index (L) and the topological index (B) of carbon atomic ordinal, are defined as:L=∑[lg(δ_i+l)(δ_j)]^-1, B=[∑(S_j · S_j)^1/2]^1/2 respectively.     

Molecular connectivity methods for the characterization of surface energetics of liquids and polymers

In the topological approach to structure-property relationships, the molecular structure is described in terms of appropriate weighted graphs to which suitable topological parameters, usually known as molecular connectivity indices, can be associated. Molecular connectivity indices are here applied to the prediction of surface free energy and Good-van Oss-Chaudhury acid-base components of organic compounds. To this aim, some quantitative structure-property relationships (QSPRs) are determined, involving both topological indices and group indicator variables of the customary functional group theory. The semiempirical models obtained to appear satisfactory and show significant advantages with respect to the models based on the purely functional group approach.     

拓扑指数与手性化合物构效关系研究

传统的拓扑指数仅考虑原子间的连接关系,不能区分手性信息．故本研究对Am指数与分子连接性指数进行了扩展,并将其用于3-苯基哌啶类手性化合物的构效关系研究．扩展后的拓扑指数构造的数学模型优于用传统的Am指数与分子连接性指数得到的模型．同时进行了变量的两两相关性测试,结果显示所选3个变量之间的相关性较小．通过交叉验证,证明手性拓扑指数所得到的数学模型是稳定的．并进一步运用人工神经网络,得到了满意的结果．     

单硫醚气相色谱保留指数拓扑化学研究

在分子拓扑化学理论的基础上,根据分子中原子的特性,用分子中原子的平衡电负性对分子图进行着色,在距离矩阵的基础上结合分子中各原子的支化度构建一组新的拓扑指数NPm(m=1,2,3),利用多元线性回归技术将单硫醚在4种极性固定相的气相色谱保留指数与NPm(m=1,2,3)建立相应的定量结构-保留相关关系模型(QSRR),并用这种模型对单硫醚的气相色谱保留指数进行预测,结果表明,预测结果和实验值吻合较好。     

Unique description of chemical structures based on hierarchically ordered extended connectivities (HOC procedures). III. Topological,chemical, and stereochemical coding of molecular structure

A topological code is devised on the basis of the unique topological representation of the molecule described in the preceding two parts of this series.¹ By adding to the topological code additional chemical information on atoms and/or bonds, as well as stereochemical information, a chemical and respectively stereochemical code (SHOC) are also constructed. The advantages of the new linear codes are that they are convention-free codes, preserving the symmetry of molecular graph, and easily implemented either manually or by means of computer programs. By concentrating all topological, chemical, and stereochemical information, our code (SHOC) is more compact and more general than the codes based on several separate lists.     

Topological bonding formation between an ultra‐high molecular weight linear polymer and a prepolymer at an early stage of free‐radical crosslinking polymerization

The free‐radical crosslinking polymerization of diallyl adipate (DAA) was carried out in the presence of poly(benzyl methacrylate) (poly(BzMA)) as a chemically inactive polymer in order to clarify the topological bonding formation between linear polymer and prepolymer before gelation; we found by chance that even at an early stage of the polymerization, the topological bonding was formed between ultra‐high molecular weight poly(BzMA) and poly(DAA) prepolymer.     

Molecular graphs as topological objects in space

Stereochemistry deals primarily with distinctions based on rigid geometry, e.g., bond angles and lengths. But some chemical species have molecular graphs (such as knots, catenanes, and nonplanar graphs K₅ and K_3.3) that reside in space in a topologically nontrivial way. For such molecules there is hope of using topological methods to gain chemical information. Viewing a molecular graph as a topological object in space makes it unrealistically flexible; but if one proves that a certain graph is “topologically chiral” or that two graphs are “topological diastereomers,” then one has ruled out interconversion under any physical conditions for which the molecular graph still makes sense. In this paper, we consider several kinds of topological questions one might ask about graphs in space, methology and results available, and specific topological properties of various molecules.     

脂肪醇的生物毒性与结构参数的相关性研究

应用量子化学从头算HF/3-21G方法得到了14种脂肪醇分子的优势构象,利用HF/3-21G法和分子图形学技术获得其电子结构、几何结构参数和连接性指数,并将这些参数与脂肪醇对番茄和红蜘蛛的毒性相关联.结果表明,脂肪醇对番茄的生物毒性与一阶分子连接性指数1X和羟基电荷QOH之间存在良好的二元线性相关性,而脂肪醇对红蜘蛛的生物毒性与一阶分子连接性指数1X和分子最高已占轨道能EH之间存在良好的二元线性相关性,成功地建立脂肪醇对番茄和红蜘蛛毒性的构效关系式.     

拓扑异构体的研究(Ⅰ)C型与S型拓扑异构体的波谱性质及结构鉴定

利用 ¹H和 ¹³C NMR, IR, UV, SEM对合成的4种C型和S型拓扑异构体进行了结构表征和分析, 发现对于不同拓扑结构的C型和S型分子可以通过 ¹H NMR来鉴别, 而对于相同拓扑结构的S型cis(SC)和trans(ST)分子, C型 cis(CC)和trans(CT)分子则要结合 ¹³C NMR来鉴别. 四种拓扑异构体的IR, UV, 波谱性质以及SEM图象没有显著的差异.     

Am指数的扩展与手性化合物的构效关系研究

构效关系研究中的分子拓扑指数(Am)通常仅代表一个化合物的拓扑特征,所以预测手性化合物活性的能力较差.我们对Am指数进行了扩展,得到eAm指数,并将其应用于手性分子的结构-活性相关研究.结果表明,由手性拓扑指数得到的QSAR模型比传统的拓扑指数有更好的统计和预测手性化合物活性的能力.