Global warming and coral reefs: modelling the effect of temperature on Acropora palmata colony growth

Data on colony growth of the branching coral Acropora palmata from fringing reefs off Discovery Bay on the north coast of Jamaica have been obtained over the period 2002-2007 using underwater photography and image analysis by both SCUBA and remotely using an ROV incorporating twin lasers. Growth modelling shows that while logarithmic growth is an approximate model for growth, a 3:3 rational polynomial function provides a significantly better fit to growth data for this coral species. Over the period 2002-2007, involving several cycles of sea surface temperature (SST) change, the rate of growth of A. palmata was largely proportional to rate of change of SST, with R(2)=0.935. These results have implications for the influence of global warming and climate change on coral reef ecosystems.     

Comparative evaluation of five protocols for protein extraction from stony corals (Scleractinia) for proteomics

Corals especially the reef‐building species are very important to marine ecosystems. Proteomics has been used for researches on coral diseases, bleaching and responses to the environment change. A robust and versatile protein extraction protocol is required for coral proteomics. However, a comparative evaluation of different protein extraction protocols is still not available for proteomic analysis of stony corals. In the present study, five protocols were compared for protein extraction from stony corals. The five protocols were TRIzol, phenol‐based extraction (PBE), trichloroacetic acid (TCA)‐acetone, glass bead‐assisted extraction (GBAE) and a commercially available kit. PBE, TRIzol and the commercial kit were more robust for extracting proteins from stony corals. The protein extraction efficiency and repeatability, two dimensional electrophoresis (2‐DE) and matrix‐assisted laser desorption/ionization time of flight mass spectrometry (MALDI TOF MS) were employed to evaluate the protocols. The results indicated that PBE protocol had the better protein extraction efficiency than the others. Protein extraction coverage varied among the procedures. Each protocol favored for certain proteins. Therefore, it is very important for coral proteomic analysis to select a suitable protein protocol upon the experimental design. In general, PBE protocol can be the first choice for extracting proteins from stony corals.     

Photosystem II heterogeneity of in hospite zooxanthellae in scleractinian corals exposed to bleaching conditions

Increased ocean temperatures are thought to be triggering mass coral bleaching events around the world. The intracellular symbiotic zooxanthellae (genus Symbiodinium) are expelled from the coral host, which is believed to be a response to photosynthetic damage within these symbionts. Several sites of impact have been proposed, and here we probe the functional heterogeneity of Photosystem II (PSII) in three coral species exposed to bleaching conditions. As length of exposure to bleaching conditions (32 degrees C and 350 micromol photons m(-2) s(-1)) increased, the QA- reoxidation kinetics showed a rise in the proportion of inactive PSII centers (PSIIx), where QB was unable to accept electrons. PSIIx contributed up to 20% of the total PSII centers in Pocillopora damicornis, 35% in Acropora nobilis and 14% in Cyphastrea serailia. Changes in Fv/Fm and amplitude of the J step along fast induction curves were found to be highly dependent upon the proportion of PSIIx centers within the total pool of PSII reaction centers. Determination of PSII antenna size revealed that under control conditions in the three coral species up to 60% of PSII centers were lacking peripheral light-harvesting complexes (PSIIbeta). In P. damicornis, the proportion of PSIIbeta increased under bleaching conditions and this could be a photoprotective mechanism in response to excess light. The rapid increases in PSIIx and PSIIbeta observed in these corals under bleaching conditions indicates these physiological processes are involved in the initial photochemical damage to zooxanthellae.     

Analytical pyrolysis-based study on intra-skeletal organic matrices from Mediterranean corals

Off-line analytical pyrolysis combined with gas chromatography–mass spectroscopy (GC–MS), directly or after trimethylsilylation, along with infrared spectroscopy and amino acid analysis was applied for the first time to the characterization of the intra-skeletal organic matrix (OM) extracted from four Mediterranean hard corals. They were diverse in growth form and trophic strategy namely Balanophyllia europaea and Leptopsammia pruvoti—solitary corals, only the first having zooxanthelle—and Cladocora caespitosa and Astroides calycularis—colonial corals, only the first with zooxanthelle. Pyrolysis products evolved from OM could be assigned to lipid (e.g. fatty acids, fatty alcohols, monoacylglicerols), protein (e.g. 2,5-diketopiperazines, DKPs) and polysaccharide (e.g. anhydrosugars) precursors. Their quantitative distribution showed for all the species a low protein content with respect to lipids and polysaccharides. A chemometric approach using principal component analysis (PCA) and clustering analysis was applied on OM mean amino acidic compositions. The small compositional diversity across coral species was tentatively related with coral growth form. The presence of N-acetyl glucosamine markers suggested a functional link with other calcified tissues containing chitin. The protein fraction was further investigated using novel DKP markers tentatively identified from analytical pyrolysis of model polar linear dipeptides. Again, no correlation was observed in relation to coral ecology. These analytical results revealed that the bulk structure and composition of OMs among studied corals are similar, as it is the textural organization of the skeleton mineralized units. Therefore, they suggest that coral’s biomineralization is governed by similar macromolecules, and probably mechanisms, independently from their ecology.     

Photochemical formation of hydroxyl radicals in tissue extracts of the coral Galaxea fascicularis

Various stresses induce the formation of reactive oxygen species (ROS) in biological cells. In addition to stress-induced ROS, we studied the photochemical formation of hydroxyl radicals (˙OH), the most potent ROS, in coral tissues using phosphate buffer-extracted solutions and a simulated sunlight irradiation system. ˙OH formation was seen in extracts of both coral host and endosymbiont zooxanthellae. This study is the first to report quantitative measurements of ˙OH photoformation in coral tissue extracts. Our results indicated that whether or not coral bleaching occurred, coral tissues and symbiotic zooxanthellae have the potential to photochemically produce ˙OH under sunlight. However, no significant difference was found in the protein content-normalized formation rates of ˙OH between corals incubated under different temperatures and irradiance conditions. ˙OH formation rates were reduced by 40% by reducing the UV radiation in the illumination. It was indicated that UV radiation strongly affected ˙OH formation in coral tissue and zooxanthellae, in addition to its formation through photoinhibition processes.     

Computer modelling and estimation of recruitment patterns of non-branching coral colonies at three sites in the Wakatobi Marine Park, S.E. Sulawesi, Indonesia; implications for coral reef conservation

We have studied growth and estimated recruitment of massive coral colonies at three sites, Kaledupa, Hoga and Sampela, separated by about 1.5 km in the Wakatobi Marine National Park, S.E. Sulawesi, Indonesia. There was significantly higher species richness (P<0.05), coral cover (P<0.05) and rugosity (P<0.01) at Kaledupa than at Sampela. A model for coral reef growth has been developed based on a rational polynomial function:

where dx/dt is an index of coral growth with time; W is the variable (for example, coral weight, coral length or coral area), up to the power of n in the numerator and m in the denominator; a₁……a_n and b₁…b_m are constants. The values for n and m represent the degree of the polynomial, and can relate to the morphology of the coral. The model was used to simulate typical coral growth curves, and tested using published data obtained by weighing coral colonies underwater in reefs on the south-west coast of Curaçao [‘Neth. J. Sea Res. 10 (1976) 285’]. The model proved an accurate fit to the data, and parameters were obtained for a number of coral species. Surface area data was obtained on over 1200 massive corals at three different sites in the Wakatobi Marine National Park, S.E. Sulawesi, Indonesia. The year of an individual's recruitment was calculated from knowledge of the growth rate modified by application of the rational polynomial model. The estimated pattern of recruitment was variable, with little numbers of massive corals settling and growing before 1950 at the heavily used site, Sampela, relative to the reef site with little or no human use, Kaledupa, and the intermediate site, Hoga. There was a significantly greater sedimentation rate at Sampela than at either Kaledupa (P<0.0001) or Hoga (P<0.0005). The relative mean abundance of fish families present at the reef crests at the three sites, determined using digital video photography, did not correlate with sedimentation rates, underwater visibility or lack of large non-branching coral colonies. Radial growth rates of three genera of non-branching corals were significantly lower at Sampela than at Kaledupa or at Hoga, and there was a high correlation (r=0.89) between radial growth rates and underwater visibility. Porites spp. was the most abundant coral over all the sites and at all depths followed by Favites (P<0.04) and Favia spp. (P<0.03). Colony ages of Porites corals were significantly lower at the 5 m reef flat on the Sampela reef than at the same depth on both other reefs (P<0.005). At Sampela, only 2.8% of corals on the 5 m reef crest are of a size to have survived from before 1950. The Scleractinian coral community of Sampela is severely impacted by depositing sediments which can lead to the suffocation of corals, whilst also decreasing light penetration resulting in decreased growth and calcification rates. The net loss of material from Sampela, if not checked, could result in the loss of this protective barrier which would be to the detriment of the sublittoral sand flats and hence the Sampela village.     

In Vitro Coral Biomineralization under Relevant Aragonite Supersaturation Conditions

The biomineralization of corals occurs under conditions of high and low supersaturation with respect to aragonite, which corresponds to day- or night-time periods of their growth, respectively. Here, in vitro precipitation of aragonite in artificial seawater was investigated at a high supersaturation, allowing spontaneous nucleation and growth, as well as at low supersaturation conditions, which allowed only the crystal growth on the deliberately introduced aragonite seeds. In either chemical systems, soluble organic matrix (SOM) extracted from Balanophyllia europaea (light sensitive) or Leptopsammia pruvoti (light insensitive) was added. The analyses of the kinetic and thermodynamic data of aragonite precipitation and microscopic observations showed that, at high supersaturation, the SOMs increased the induction time, did not affect the growth rate and were incorporated within aggregates of nanoparticles. At low supersaturation, the SOMs affected the aggregation of overgrowing crystalline units and did not substantially change the growth rate. On the basis of the obtained results we can infer that at high supersaturation conditions the formation of nanoparticles, which is typically observed in the skeleton's early mineralization zone may occur, whereas at low supersaturation the overgrowth on prismatic seeds observed in the skeleton fiber zone is a predominant process. In conclusion, this research brings insight on coral skeletogenesis bridging physicochemical (supersaturation) and biological (role of SOM) models of coral biomineralization and provides a source of inspiration for the precipitation of composite materials under different conditions of supersaturation.     

Mg isotope fractionation in biogenic carbonates of deep-sea coral, benthic foraminifera, and hermatypic coral

High-precision Mg isotope measurements by multiple collector inductively coupled plasma mass spectrometry were applied for determinations of magnesium isotopic fractionation of biogenic calcium carbonates from seawater with a rapid Mg purification technique. The mean δ²⁶Mg values of scleractinian corals, giant clam, benthic foraminifera, and calcite deep-sea corals were −0.87‰, −2.57‰, −2.34‰, and −2.43‰, suggesting preferential precipitation of light Mg isotopes to produce carbonate skeleton in biomineralization. Mg isotope fractionation in deep-sea coral, which has high Mg calcite skeleton, showed a clear temperature (T) dependence from 2.5 °C to 19.5 °C: 1,000 × ln(α) = −2.63 (±0.076) + 0.0138 (±0.0051) × T(R ² = 0.82, p < 0.01). The δ²⁶Mg values of large benthic foraminifera, which are also composed of a high-Mg calcite skeleton, can be plotted on the same regression line as that for deep-sea coral. Since the precipitation rates of deep-sea coral and benthic foraminifera are several orders of magnitude different, the results suggest that kinetic isotope fractionation may not be a major controlling factor for high-Mg calcite. The Mg isotope fractionation factors and the slope of temperature dependence from deep-sea corals and benthic foraminifera are similar to that for an inorganically precipitated calcite speleothem. Taking into account element partitioning and the calcification rate of biogenic CaCO₃, the similarity among inorganic minerals, deep-sea corals, and benthic foraminiferas may indicate a strong mineralogical control on Mg isotope fractionation for high-Mg calcite. On the other hand, δ²⁶Mg in hermatypic corals composed of aragonite has been comparable with previous data on biogenic aragonite of coral, sclerosponges, and scaphopad, regardless of species differences of samples.     

Incident Ultraviolet Irradiances Influence Physiology,Development and Settlement of Larva in the Coral Pocillopora damicornis

Ultraviolet radiation (UVR, 280–400 nm) is one of the potential factors involved in the induction of coral bleaching, loss of the endosymbiotic dinoflagellate Symbiodinium or their photosynthetic pigments. However, little has been documented on its effects on the behavior and recruitment of coral larvae, which sustains coral reef ecosystems. Here, we analyzed physiological changes in larvae of the scleractinian coral Pocillopora damicornis and examined the photophysiological performance of the symbiont algae, following exposure to incident levels of UVR and subsequently observed the development of coral larvae. The endosymbiotic algae exhibited a high sensitivity to UV‐B (295–320 nm) during a 6 h exposure, showing lowered photosynthetic performance per larva and per algal cell, whereas the presence of UV‐A (320–395 nm) significantly stimulated photosynthesis. UVR decreased chlorophyll a concentration only at higher surface temperature or at the higher doses or intensities of UVR. Correlations between UV‐absorbing compound (UVAC) contents or UVR sensitivity and temperature were identified, implying that UVACs might act as a screen or antioxidants in Pocillopora damicornis larvae. Larvae reared under UVR exposures showed lower levels of survivorship, metamorphosis and settlement, with inhibition by UV‐A being much greater than that caused by UV‐B.     

珊瑚中硼的分离及其同位素组成的测定

介绍了用硼特效树脂和阴、阳混合离子交换树脂相结合进行珊瑚中硼的分离和纯化方法，满足了正热电离质谱法测定硼同位素的要求，并且对几个珊瑚样品进行了硼的分离和硼同位素组成的测定，结果满意，为研究珊瑚中的硼同位素示踪古海洋环境变化提供了可能。     

Optimization of DNA extraction from a scleractinian coral for the detection of thymine dimers by immunoassay

Ultraviolet (UV)-B is known to cause DNA damage, principally by the formation of thymine dimers, but little research has been conducted in coral reef environments where UV doses are high. The majority of tropical reef-dwelling corals form a mutualistic symbiosis with the dinoflagellate Symbiodinium but few studies have been conducted on in situ DNA damage in corals and none have investigated the symbiotic components separately. The aim of this research was to quantify DNA damage in both the coral host and the dinoflagellate symbiont. The first step in this investigation was to optimize the extraction of DNA from the host, Porites astreoides, as well as the symbiont. The optimization was divided into a series of steps: the preservation of the samples, separation of the coral tissue from the skeleton, separation of the host tissue from the algal cells to prevent cross contamination as well as the extraction and purification of genomic DNA from the algae that are located intracellularly within the invertebrate animal tissue. The best preservation method was freezing at low temperatures without ethanol. After scraping with a razor blade, the coral tissue can be divided into host and algal components and the DNA extracted using modifications of published techniques yielding DNA suitable for the quantification of thymine dimer formation using antibodies. Preliminary data suggest that in P. astreoides collected from 1 m depth, thymine dimers form approximately 2.8 times more frequently in the host DNA than in the DNA of its symbionts.     

Modelling effects of geoengineering options in response to climate change and global warming: Implications for coral reefs

Climate change will have serious effects on the planet and on its ecosystems. Currently, mitigation efforts are proving ineffectual in reducing anthropogenic CO₂ emissions. Coral reefs are the most sensitive ecosystems on the planet to climate change, and here we review modelling a number of geoengineering options, and their potential influence on coral reefs. There are two categories of geoengineering, shortwave solar radiation management and longwave carbon dioxide removal. The first set of techniques only reduce some, but not all, effects of climate change, while possibly creating other problems. They also do not affect CO₂ levels and therefore fail to address the wider effects of rising CO₂, including ocean acidification, important for coral reefs. Solar radiation is important to coral growth and survival, and solar radiation management is not in general appropriate for this ecosystem. Longwave carbon dioxide removal techniques address the root cause of climate change, rising CO₂ concentrations, they have relatively low uncertainties and risks. They are worthy of further research and potential implementation, particularly carbon capture and storage, biochar, and afforestation methods, alongside increased mitigation of atmospheric CO₂ concentrations.     

Spectroscopic characterization of natural corals

The FTIR, micro-Raman, NMR, and XPS spectra of 25 different natural corals have been compared. Reflectance and transmission absorbance IR and Raman data have been used as rapid and efficient means of classification of natural corals containing aragonite (non-precious white species), calcite (red, pink, precious white species), and organic material (black protein polymer). The combination of reflectance IR and infrared microscopy could serve as a rapid, non-destructive method for distinguishing natural corals from artificial, fake jewels.     

11,20-Epoxybriaranes from the gorgonian coral Ellisella robusta (Ellisellidae)

Chemical investigation on the organic extract of the gorgonian coral Ellisella robusta furnished two 11,20-epoxybriaranes 1 and 2. The structures of briaranes 1 and 2 were assigned on the basis of spectroscopic evidence. The natural products of this type (11,20-epoxybriarane) were found to be a chemical marker for the gorgonian corals belonging to the family Ellisellidae.     

Determination of fluorine in coral skeletons by instrumental neutron activation analysis

Summary A systematic and non-destructive technique is proposed for the determination of fluorine in coral samples by instrumental neutron activation analysis using the ¹⁹F(n,γ)²⁰F reaction. About 50 to 80-mg samples in polypropylene capsules were irradiated for 15 seconds in the pneumatic transfer tube system (PN-3) of JRR-3M reactor. After the irradiation at a thermal neutron flux of 1.5 ^. 10¹³ n ^. cm^{-2 .} s^-1, the coral samples and standards were cooled for 6 seconds and the g-rays emitted were measured for 15 seconds with a Ge detector. The sequence from sample irradiation to g-ray counting was performed under a computer-control mode. The analytical precision was ~5% for the JCp-1 coral standard. The present method was applied to the determination of fluorine in corals from Thailand, Okinawa and the Philippines. The advantage of one method over destructive techniques is discussed by comparing the analytical results obtained for the JCp-1 coral standard using INAA, ion chromatography and spectrophotometry. Factors that may control the levels of fluorine in corals are also discussed.     

Boron in coral skeletons determined by prompt γ-ray analysis

A systematic and non-destructive technique is proposed for the determination of boron in coral samples by neutron-induced prompt γ-ray analysis (PGA) using a thermal neutron guide beam of the JRR-3M reactor. About 50–150 mg samples in sealed FEP film were irradiated and measured for 5000 s in the PGA system at a neutron flux of 2.4 × 10⁷ n cm⁻² s⁻¹. In order to determine B content in coral skeletons, the Doppler-broadened γ-ray peak of 478 keV (¹⁰B) was used together with the correction of interference from the Na-peak of 472 keV. The analytical precision was ~3% for the JCp-1 coral standard. The data (n = 56) obtained by the present method showed a range of B content from 40.7 to 76.9 ppm which is similar to reported values. Boron in corals showed the highest levels in Rukan-sho (Okinawa) with an average B content of 62.5 ppm, whereas corals collected from Mizugama (Okinawa), Cebu (the Philippines) and Khang Khao (Thailand) exhibited B contents of 56.5, 53.0 and 45.7 ppm, respectively. The uptake of boron by living corals may be influenced by seawater pH related to higher seawater B(OH)₄⁻. In this paper we discuss factors controlling the B levels in corals.     

Mg/Ca partitioning between aqueous solution and aragonite mineral: a molecular dynamics study

We have calculated the concentrations of Mg in the bulk and surfaces of aragonite CaCO(3) in equilibrium with aqueous solution, based on molecular dynamics simulations and grand-canonical statistical mechanics. Mg is incorporated in the surfaces, in particular in the (001) terraces, rather than in the bulk of aragonite particles. However, the total Mg content in the bulk and surface of aragonite particles was found to be too small to account for the measured Mg/Ca ratios in corals. We therefore argue that most Mg in corals is either highly metastable in the aragonite lattice, or is located outside the aragonite phase of the coral skeleton, and we discuss the implications of this finding for Mg/Ca paleothermometry.     

Palythine–threonine,a major novel mycosporine-like amino acid (MAA) isolated from the hermatypic coral Pocillopora capitata

Using a high-resolution reverse-phase liquid chromatography method we found that the tissues of the hermatypic coral Pocillopora capitata (collected in Santiago Bay, Mexico) contain a high diversity of primary and secondary mycosporine-like amino acids (MAAs) typical of some reef-building coral species: mycosporine–glycine, shinorine, porphyra-334, mycosporine–methylamine–serine, mycosporine–methylamine–threonine, palythine–serine, palythine and one additional novel predominant MAA, with an absorbance maximum of 320 nm. Here we document the isolation and characterization of this novel MAA from the coral P. capitata. Using low multi-stage mass analyses of deuterated and non deuterated compounds, high-resolution mass analyses (Time of Flight, TOF) and other techniques, this novel compound was characterized as palythine–threonine. Palythine–threonine was also present in high concentrations in the corals Pocillopora eydouxi and Stylophora pistillata indicating a wider distribution of this MAA among reef-building corals. From structural considerations we suggest that palythine–threonine is formed by decarboxylation of porphyra-334 followed by demethylation of mycosporine–methylamine–threonine.     

圆裂短足软珊瑚Cladiella krempfi中的甾醇苷

软珊瑚中富含各种萜类、甾类和糖苷[1～ 3] .Christopher[4 ] 和 Bheemasankara[5] 等先后对圆裂短足软珊瑚 Cladiella krempfi中的次生代谢产物进行了研究 ,先后分离得到 5个西松烷二萜 .本文报道从广西涠洲半岛采集的圆裂短足软珊瑚 Cladiella krempfi中首次分离得到 2个甾醇苷 1和 2 ,其中 1是新化合物 .化合物 2曾从南中国海的豆荚软珊瑚 Lobophyton sp.中分离得到 ,它对人体鼻咽癌 (Cne 2 )和肝癌 (Pep-G2 )细胞生长有抑制作用[6 ] .化合物 1和 2的结构如下 :1　结果与讨论化合物 1经 Liebermann-Burchard试验呈甾醇正颜色反应 ,M…     

《京都议定书》要减排哪些温室气体

《联合国气候变化框架公约--京都议定书》于2005年2月16日正式生效,本文介绍全球气候变暖的最新趋势,什么是温室气体,温室气体对于全球气候变暖的贡献大小所取决的主要因素,《京都议定书》要求减排的主要温室气体。